PDB Short entry for 2X5H HEADER VIRAL PROTEIN 08-FEB-10 2X5H TITLE CRYSTAL STRUCTURE OF THE ORF131 L26M L51M DOUBLE MUTANT FROM TITLE 2 SULFOLOBUS ISLANDICUS RUDIVIRUS 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF 131; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: TRUNCATED VERSION, RESIDUES 1-96; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN 131, CAG38830; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS RUDIVIRUS 1; SOURCE 3 ORGANISM_TAXID: 282066; SOURCE 4 VARIANT: XX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,J.H.NAISMITH,M.F.WHITE REVDAT 2 20-DEC-23 2X5H 1 REMARK REVDAT 1 21-JUL-10 2X5H 0 JRNL AUTH M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,X.YAN, JRNL AUTH 2 M.KEROU,N.D.WEIKART,N.KADI,M.A.SHEIKH,S.SCHMELZ,M.DORWARD, JRNL AUTH 3 M.ZAWADZKI,C.COZENS,H.FALCONER,H.POWERS,I.M.OVERTON, JRNL AUTH 4 C.A.J.VAN NIEKERK,X.PENG,P.PATEL,R.A.GARRETT,D.PRANGISHVILI, JRNL AUTH 5 C.H.BOTTING,P.J.COOTE,D.T.F.DRYDEN,G.J.BARTON, JRNL AUTH 6 U.SCHWARZ-LINEK,G.L.CHALLIS,G.L.TAYLOR,M.F.WHITE, JRNL AUTH 7 J.H.NAISMITH JRNL TITL THE SCOTTISH STRUCTURAL PROTEOMICS FACILITY: TARGETS, JRNL TITL 2 METHODS AND OUTPUTS. JRNL REF J.STRUCT.FUNCT.GENOM. V. 11 167 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20419351 JRNL DOI 10.1007/S10969-010-9090-Y REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 28543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1989 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 0.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.19000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.297 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3078 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2204 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4121 ; 1.149 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5434 ; 0.772 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 5.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;37.429 ;25.664 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 663 ;14.229 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.823 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3312 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 556 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 599 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2281 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1488 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1760 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 276 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 85 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2504 ; 0.902 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 755 ; 0.160 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3018 ; 0.995 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1384 ; 1.787 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1096 ; 2.451 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 13 A 40 5 REMARK 3 1 B 13 B 40 5 REMARK 3 1 C 13 C 40 5 REMARK 3 2 A 49 A 52 5 REMARK 3 2 B 49 B 52 5 REMARK 3 2 C 49 C 52 5 REMARK 3 3 A 63 A 84 5 REMARK 3 3 B 63 B 84 5 REMARK 3 3 C 63 C 84 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 317 ; 0.21 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 317 ; 0.14 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 317 ; 0.20 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 412 ; 0.86 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 412 ; 0.71 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 412 ; 0.79 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 317 ; 0.67 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 317 ; 0.65 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 317 ; 0.73 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 412 ; 1.22 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 412 ; 1.02 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 412 ; 1.37 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 41 A 48 6 REMARK 3 1 B 41 B 48 6 REMARK 3 1 D 41 D 48 6 REMARK 3 2 A 53 A 62 6 REMARK 3 2 B 53 B 62 6 REMARK 3 2 D 53 D 62 6 REMARK 3 3 A 85 A 90 6 REMARK 3 3 B 85 B 90 6 REMARK 3 3 D 85 D 90 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 A (A): 351 ; 0.98 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 B (A): 351 ; 0.99 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 D (A): 351 ; 1.49 ; 5.00 REMARK 3 LOOSE THERMAL 2 A (A**2): 351 ; 2.29 ; 10.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 351 ; 1.99 ; 10.00 REMARK 3 LOOSE THERMAL 2 D (A**2): 351 ; 2.16 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 14 A 24 5 REMARK 3 1 D 14 D 24 5 REMARK 3 2 A 69 A 80 5 REMARK 3 2 D 69 D 80 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 136 ; 0.15 ; 0.50 REMARK 3 MEDIUM POSITIONAL 3 D (A): 136 ; 0.15 ; 0.50 REMARK 3 LOOSE POSITIONAL 3 A (A): 173 ; 0.80 ; 5.00 REMARK 3 LOOSE POSITIONAL 3 D (A): 173 ; 0.80 ; 5.00 REMARK 3 MEDIUM THERMAL 3 A (A**2): 136 ; 0.60 ; 2.00 REMARK 3 MEDIUM THERMAL 3 D (A**2): 136 ; 0.60 ; 2.00 REMARK 3 LOOSE THERMAL 3 A (A**2): 173 ; 1.19 ; 10.00 REMARK 3 LOOSE THERMAL 3 D (A**2): 173 ; 1.19 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 25 A 42 6 REMARK 3 1 D 25 D 42 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 4 A (A): 226 ; 0.81 ; 5.00 REMARK 3 LOOSE POSITIONAL 4 D (A): 226 ; 0.81 ; 5.00 REMARK 3 LOOSE THERMAL 4 A (A**2): 226 ; 1.16 ; 10.00 REMARK 3 LOOSE THERMAL 4 D (A**2): 226 ; 1.16 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 46 A 68 6 REMARK 3 1 D 46 D 68 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 5 A (A): 317 ; 1.00 ; 5.00 REMARK 3 LOOSE POSITIONAL 5 D (A): 317 ; 1.00 ; 5.00 REMARK 3 LOOSE THERMAL 5 A (A**2): 317 ; 1.76 ; 10.00 REMARK 3 LOOSE THERMAL 5 D (A**2): 317 ; 1.76 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 81 A 90 6 REMARK 3 1 D 81 D 90 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 6 A (A): 156 ; 0.84 ; 5.00 REMARK 3 LOOSE POSITIONAL 6 D (A): 156 ; 0.84 ; 5.00 REMARK 3 LOOSE THERMAL 6 A (A**2): 156 ; 2.03 ; 10.00 REMARK 3 LOOSE THERMAL 6 D (A**2): 156 ; 2.03 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5650 0.5610 6.3960 REMARK 3 T TENSOR REMARK 3 T11: -0.1991 T22: -0.1811 REMARK 3 T33: -0.1424 T12: 0.0332 REMARK 3 T13: 0.0220 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.6706 L22: 0.7430 REMARK 3 L33: 3.7868 L12: -0.3702 REMARK 3 L13: 1.1783 L23: -0.4057 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.0389 S13: 0.0056 REMARK 3 S21: 0.0754 S22: 0.0180 S23: 0.0116 REMARK 3 S31: 0.0631 S32: 0.0453 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0400 22.3380 -8.0910 REMARK 3 T TENSOR REMARK 3 T11: -0.1483 T22: -0.1926 REMARK 3 T33: -0.1210 T12: -0.0024 REMARK 3 T13: 0.0197 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.6372 L22: 3.0417 REMARK 3 L33: 4.7706 L12: -0.8156 REMARK 3 L13: -0.3248 L23: 3.4488 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.0338 S13: 0.0083 REMARK 3 S21: -0.2488 S22: -0.0338 S23: -0.0028 REMARK 3 S31: -0.3085 S32: -0.0005 S33: -0.0053 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 94 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0550 23.0620 7.5700 REMARK 3 T TENSOR REMARK 3 T11: -0.1559 T22: -0.1596 REMARK 3 T33: -0.0522 T12: 0.0315 REMARK 3 T13: 0.0521 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.6615 L22: 2.1024 REMARK 3 L33: 5.8620 L12: 0.9227 REMARK 3 L13: 1.9065 L23: 0.9367 REMARK 3 S TENSOR REMARK 3 S11: 0.1400 S12: -0.1778 S13: -0.2409 REMARK 3 S21: 0.1817 S22: -0.0699 S23: -0.1304 REMARK 3 S31: 0.2138 S32: -0.1000 S33: -0.0702 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 94 REMARK 3 ORIGIN FOR THE GROUP (A): 39.4920 0.8400 -8.6870 REMARK 3 T TENSOR REMARK 3 T11: -0.1633 T22: -0.1734 REMARK 3 T33: -0.1143 T12: 0.0117 REMARK 3 T13: 0.0088 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.6663 L22: 1.0166 REMARK 3 L33: 5.1278 L12: 0.0250 REMARK 3 L13: -0.3008 L23: 1.3780 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.0208 S13: -0.0899 REMARK 3 S21: -0.0620 S22: 0.0792 S23: -0.1134 REMARK 3 S31: -0.0692 S32: 0.1010 S33: -0.0842 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2X5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290036247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 14.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2X5G REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M SODIUM MALONATE AND REMARK 280 CRYOPROTECTED WITH 2.4 M MALONATE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 26 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 51 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 26 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 51 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN C, LEU 26 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN C, LEU 51 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN D, LEU 26 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN D, LEU 51 TO MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 92 REMARK 465 PHE A 93 REMARK 465 THR A 94 REMARK 465 PRO A 95 REMARK 465 ARG A 96 REMARK 465 LYS B 92 REMARK 465 PHE B 93 REMARK 465 THR B 94 REMARK 465 PRO B 95 REMARK 465 ARG B 96 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 PRO C 95 REMARK 465 ARG C 96 REMARK 465 GLY D 0 REMARK 465 PRO D 95 REMARK 465 ARG D 96 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 91 O HOH A 2113 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 33 -44.25 -147.19 REMARK 500 ASN A 58 94.55 -167.27 REMARK 500 ARG B 33 -46.24 -143.39 REMARK 500 ARG C 33 -46.02 -138.32 REMARK 500 ASN C 58 110.31 -165.74 REMARK 500 PHE C 93 -13.70 114.23 REMARK 500 ASN D 58 102.53 -175.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2016 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1092 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X5G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ORF131L51M MUTANT FROM SULFOLOBUS REMARK 900 ISLANDICUS RUDIVIRUS 1 DBREF 2X5H A 1 96 UNP Q8QL44 Y131_SIRV1 1 96 DBREF 2X5H B 1 96 UNP Q8QL44 Y131_SIRV1 1 96 DBREF 2X5H C 1 96 UNP Q8QL44 Y131_SIRV1 1 96 DBREF 2X5H D 1 96 UNP Q8QL44 Y131_SIRV1 1 96 SEQADV 2X5H GLY A 0 UNP Q8QL44 EXPRESSION TAG SEQADV 2X5H GLY B 0 UNP Q8QL44 EXPRESSION TAG SEQADV 2X5H GLY C 0 UNP Q8QL44 EXPRESSION TAG SEQADV 2X5H GLY D 0 UNP Q8QL44 EXPRESSION TAG SEQADV 2X5H MET A 26 UNP Q8QL44 LEU 26 ENGINEERED MUTATION SEQADV 2X5H MET A 51 UNP Q8QL44 LEU 51 ENGINEERED MUTATION SEQADV 2X5H MET B 26 UNP Q8QL44 LEU 26 ENGINEERED MUTATION SEQADV 2X5H MET B 51 UNP Q8QL44 LEU 51 ENGINEERED MUTATION SEQADV 2X5H MET C 26 UNP Q8QL44 LEU 26 ENGINEERED MUTATION SEQADV 2X5H MET C 51 UNP Q8QL44 LEU 51 ENGINEERED MUTATION SEQADV 2X5H MET D 26 UNP Q8QL44 LEU 26 ENGINEERED MUTATION SEQADV 2X5H MET D 51 UNP Q8QL44 LEU 51 ENGINEERED MUTATION SEQRES 1 A 97 GLY MET ALA SER LEU LYS GLU ILE ILE ASP GLU LEU GLY SEQRES 2 A 97 LYS GLN ALA LYS GLU GLN ASN LYS ILE ALA SER ARG ILE SEQRES 3 A 97 MET LYS ILE LYS GLY ILE LYS ARG ILE VAL VAL GLN LEU SEQRES 4 A 97 ASN ALA VAL PRO GLN ASP GLY LYS ILE ARG TYR SER MET SEQRES 5 A 97 THR ILE HIS SER GLN ASN ASN PHE ARG LYS GLN ILE GLY SEQRES 6 A 97 ILE THR PRO GLN ASP ALA GLU ASP LEU LYS LEU ILE ALA SEQRES 7 A 97 GLU PHE LEU GLU LYS TYR SER ASP PHE LEU ASN GLU TYR SEQRES 8 A 97 VAL LYS PHE THR PRO ARG SEQRES 1 B 97 GLY MET ALA SER LEU LYS GLU ILE ILE ASP GLU LEU GLY SEQRES 2 B 97 LYS GLN ALA LYS GLU GLN ASN LYS ILE ALA SER ARG ILE SEQRES 3 B 97 MET LYS ILE LYS GLY ILE LYS ARG ILE VAL VAL GLN LEU SEQRES 4 B 97 ASN ALA VAL PRO GLN ASP GLY LYS ILE ARG TYR SER MET SEQRES 5 B 97 THR ILE HIS SER GLN ASN ASN PHE ARG LYS GLN ILE GLY SEQRES 6 B 97 ILE THR PRO GLN ASP ALA GLU ASP LEU LYS LEU ILE ALA SEQRES 7 B 97 GLU PHE LEU GLU LYS TYR SER ASP PHE LEU ASN GLU TYR SEQRES 8 B 97 VAL LYS PHE THR PRO ARG SEQRES 1 C 97 GLY MET ALA SER LEU LYS GLU ILE ILE ASP GLU LEU GLY SEQRES 2 C 97 LYS GLN ALA LYS GLU GLN ASN LYS ILE ALA SER ARG ILE SEQRES 3 C 97 MET LYS ILE LYS GLY ILE LYS ARG ILE VAL VAL GLN LEU SEQRES 4 C 97 ASN ALA VAL PRO GLN ASP GLY LYS ILE ARG TYR SER MET SEQRES 5 C 97 THR ILE HIS SER GLN ASN ASN PHE ARG LYS GLN ILE GLY SEQRES 6 C 97 ILE THR PRO GLN ASP ALA GLU ASP LEU LYS LEU ILE ALA SEQRES 7 C 97 GLU PHE LEU GLU LYS TYR SER ASP PHE LEU ASN GLU TYR SEQRES 8 C 97 VAL LYS PHE THR PRO ARG SEQRES 1 D 97 GLY MET ALA SER LEU LYS GLU ILE ILE ASP GLU LEU GLY SEQRES 2 D 97 LYS GLN ALA LYS GLU GLN ASN LYS ILE ALA SER ARG ILE SEQRES 3 D 97 MET LYS ILE LYS GLY ILE LYS ARG ILE VAL VAL GLN LEU SEQRES 4 D 97 ASN ALA VAL PRO GLN ASP GLY LYS ILE ARG TYR SER MET SEQRES 5 D 97 THR ILE HIS SER GLN ASN ASN PHE ARG LYS GLN ILE GLY SEQRES 6 D 97 ILE THR PRO GLN ASP ALA GLU ASP LEU LYS LEU ILE ALA SEQRES 7 D 97 GLU PHE LEU GLU LYS TYR SER ASP PHE LEU ASN GLU TYR SEQRES 8 D 97 VAL LYS PHE THR PRO ARG HET SO4 A1092 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *380(H2 O) HELIX 1 1 GLY A 0 ASN A 19 1 20 HELIX 2 2 THR A 66 GLN A 68 5 3 HELIX 3 3 ASP A 69 TYR A 83 1 15 HELIX 4 4 TYR A 83 VAL A 91 1 9 HELIX 5 5 GLY B 0 ASN B 19 1 20 HELIX 6 6 THR B 66 GLN B 68 5 3 HELIX 7 7 ASP B 69 TYR B 83 1 15 HELIX 8 8 TYR B 83 VAL B 91 1 9 HELIX 9 9 SER C 3 ASN C 19 1 17 HELIX 10 10 THR C 66 GLN C 68 5 3 HELIX 11 11 ASP C 69 TYR C 83 1 15 HELIX 12 12 TYR C 83 VAL C 91 1 9 HELIX 13 13 SER D 3 ASN D 19 1 17 HELIX 14 14 THR D 66 GLN D 68 5 3 HELIX 15 15 ASP D 69 VAL D 91 1 23 SHEET 1 AA 4 ALA A 22 ILE A 25 0 SHEET 2 AA 4 ILE A 34 GLN A 43 -1 O LEU A 38 N ARG A 24 SHEET 3 AA 4 LYS A 46 SER A 55 -1 O LYS A 46 N GLN A 43 SHEET 4 AA 4 ASN A 58 ILE A 65 -1 N ASN A 58 O SER A 55 SHEET 1 BA 4 ALA B 22 ILE B 25 0 SHEET 2 BA 4 ILE B 34 GLN B 43 -1 O LEU B 38 N ARG B 24 SHEET 3 BA 4 LYS B 46 SER B 55 -1 O LYS B 46 N GLN B 43 SHEET 4 BA 4 ASN B 58 ILE B 65 -1 N ASN B 58 O SER B 55 SHEET 1 CA 4 ALA C 22 ILE C 25 0 SHEET 2 CA 4 ILE C 34 GLN C 43 -1 O LEU C 38 N ARG C 24 SHEET 3 CA 4 LYS C 46 SER C 55 -1 O LYS C 46 N GLN C 43 SHEET 4 CA 4 GLN C 62 ILE C 65 -1 O ILE C 63 N ILE C 53 SHEET 1 DA 4 ALA D 22 ILE D 25 0 SHEET 2 DA 4 VAL D 35 GLN D 43 -1 O LEU D 38 N ARG D 24 SHEET 3 DA 4 LYS D 46 SER D 55 -1 O LYS D 46 N GLN D 43 SHEET 4 DA 4 ASN D 58 ILE D 65 -1 O ASN D 58 N SER D 55 SITE 1 AC1 5 ARG A 33 HOH A2114 HOH A2115 HOH A2116 SITE 2 AC1 5 LYS B 32 CRYST1 37.940 46.971 48.976 90.22 95.05 91.78 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026357 0.000819 0.002335 0.00000 SCALE2 0.000000 0.021300 0.000141 0.00000 SCALE3 0.000000 0.000000 0.020498 0.00000