PDB Short entry for 2X7N HEADER RIBOSOMAL PROTEIN/RNA 02-MAR-10 2X7N TITLE MECHANISM OF EIF6S ANTI-ASSOCIATION ACTIVITY CAVEAT 2X7N ILE C 109 CBETA WRONG HAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCIN-RICIN LOOP; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 2684-2711; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 6; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 1-224; COMPND 9 SYNONYM: EIF-6; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 60S RIBOSOMAL PROTEIN L23; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: RESIDUES 6-137; COMPND 14 SYNONYM: YL32, L17A; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: 60S RIBOSOMAL PROTEIN L24-A; COMPND 17 CHAIN: D; COMPND 18 FRAGMENT: RESIDUES 1-56; COMPND 19 SYNONYM: L30, YL221, RP29 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 15 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 16 ORGANISM_TAXID: 4932 KEYWDS RIBOSOMAL PROTEIN-RNA COMPLEX, INITIATION FACTOR, PROTEIN KEYWDS 2 BIOSYNTHESIS, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR M.GARTMANN,M.BLAU,J.-P.ARMACHE,T.MIELKE,M.TOPF,R.BECKMANN REVDAT 6 03-OCT-18 2X7N 1 REMARK REVDAT 5 30-AUG-17 2X7N 1 COMPND REMARK REVDAT 4 17-JUL-13 2X7N 1 REMARK VERSN LINK REVDAT 3 19-MAY-10 2X7N 1 JRNL REVDAT 2 14-APR-10 2X7N 1 JRNL REVDAT 1 31-MAR-10 2X7N 0 JRNL AUTH M.GARTMANN,M.BLAU,J.-P.ARMACHE,T.MIELKE,M.TOPF,R.BECKMANN JRNL TITL MECHANISM OF EIF6-MEDIATED INHIBITION OF RIBOSOMAL SUBUNIT JRNL TITL 2 JOINING. JRNL REF J.BIOL.CHEM. V. 285 14848 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20356839 JRNL DOI 10.1074/JBC.C109.096057 REMARK 2 REMARK 2 RESOLUTION. 11.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1G62 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--FLEX-EM REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 11.80 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD REMARK 3 -1705. REMARK 4 REMARK 4 2X7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1290043073. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : 60S-EIF6 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : ETHANE REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : CRYO-EM SINGLE-PARTICLE REMARK 245 RECONSTRUCTION REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 95.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.26 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 20.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 39000 REMARK 245 CALIBRATED MAGNIFICATION : 38900 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U A2711 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 U A 2710 NE ARG C 7 0.51 REMARK 500 CB ASP B 78 CG MET D 1 0.74 REMARK 500 O PRO C 100 N LYS C 101 1.40 REMARK 500 NE2 GLN B 75 O SER D 26 1.61 REMARK 500 CA ILE C 109 N THR C 110 1.62 REMARK 500 OE1 GLU B 8 OE1 GLN C 2 1.68 REMARK 500 OP1 U A 2710 CZ ARG C 7 1.72 REMARK 500 OP1 U A 2710 CD ARG C 7 1.74 REMARK 500 O LYS C 101 N GLY C 102 1.75 REMARK 500 O GLU C 103 N MET C 104 1.76 REMARK 500 CA ASP B 78 CG MET D 1 1.79 REMARK 500 P U A 2710 NE ARG C 7 1.83 REMARK 500 N ALA B 103 O GLY C 129 1.86 REMARK 500 N ASP B 78 SD MET D 1 1.89 REMARK 500 CG ASP B 78 CE MET D 1 1.90 REMARK 500 OD2 ASP B 78 SD MET D 1 1.90 REMARK 500 CG ASP B 78 CG MET D 1 1.92 REMARK 500 CA SER B 102 CA GLY C 129 1.93 REMARK 500 CD2 PHE C 6 OE2 GLU C 116 1.94 REMARK 500 CG ASP B 78 SD MET D 1 1.96 REMARK 500 N ASP B 78 CE MET D 1 1.98 REMARK 500 OP2 U A 2710 NH2 ARG C 7 1.99 REMARK 500 OD1 ASP B 78 CE MET D 1 2.03 REMARK 500 CB ASP B 78 SD MET D 1 2.05 REMARK 500 NE2 GLN B 75 CB SER D 26 2.08 REMARK 500 C SER B 102 O GLY C 129 2.08 REMARK 500 NH2 ARG B 96 CE MET D 1 2.11 REMARK 500 O2' C A 2686 N ALA C 1 2.13 REMARK 500 CA ASP B 78 CE MET D 1 2.13 REMARK 500 CB ASP B 78 CB MET D 1 2.15 REMARK 500 CA ALA B 103 O GLY C 129 2.16 REMARK 500 CD ARG B 100 CB ASP D 25 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 202 CB TYR B 202 CG -0.092 REMARK 500 PRO C 100 CD PRO C 100 N 0.274 REMARK 500 PRO C 100 CA PRO C 100 C 0.444 REMARK 500 PRO C 100 C PRO C 100 O -0.235 REMARK 500 PRO C 100 C LYS C 101 N 0.166 REMARK 500 LYS C 105 N LYS C 105 CA -0.168 REMARK 500 GLY C 106 N GLY C 106 CA -0.123 REMARK 500 SER C 107 CA SER C 107 CB 0.122 REMARK 500 ILE C 109 N ILE C 109 CA -0.139 REMARK 500 ILE C 109 CA ILE C 109 CB -0.142 REMARK 500 ILE C 109 C THR C 110 N 0.259 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A2692 N9 - C1' - C2' ANGL. DEV. = 13.1 DEGREES REMARK 500 G A2692 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 TRP C 80 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO C 100 N - CA - CB ANGL. DEV. = -15.0 DEGREES REMARK 500 PRO C 100 CA - CB - CG ANGL. DEV. = 21.6 DEGREES REMARK 500 PRO C 100 CA - C - O ANGL. DEV. = -74.2 DEGREES REMARK 500 PRO C 100 O - C - N ANGL. DEV. = -57.9 DEGREES REMARK 500 LYS C 101 CA - CB - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 LYS C 101 CD - CE - NZ ANGL. DEV. = 20.9 DEGREES REMARK 500 LYS C 101 CA - C - N ANGL. DEV. = 18.5 DEGREES REMARK 500 LYS C 101 O - C - N ANGL. DEV. = -37.5 DEGREES REMARK 500 GLU C 103 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 GLU C 103 CB - CG - CD ANGL. DEV. = -23.9 DEGREES REMARK 500 GLU C 103 OE1 - CD - OE2 ANGL. DEV. = 9.5 DEGREES REMARK 500 GLU C 103 CG - CD - OE1 ANGL. DEV. = -24.4 DEGREES REMARK 500 GLU C 103 CG - CD - OE2 ANGL. DEV. = 14.7 DEGREES REMARK 500 GLU C 103 CA - C - O ANGL. DEV. = 30.1 DEGREES REMARK 500 GLU C 103 O - C - N ANGL. DEV. = -31.1 DEGREES REMARK 500 MET C 104 CB - CG - SD ANGL. DEV. = -26.6 DEGREES REMARK 500 MET C 104 CG - SD - CE ANGL. DEV. = -12.2 DEGREES REMARK 500 MET C 104 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 MET C 104 O - C - N ANGL. DEV. = 10.4 DEGREES REMARK 500 LYS C 105 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 LYS C 105 CA - C - O ANGL. DEV. = -17.2 DEGREES REMARK 500 LYS C 105 CA - C - N ANGL. DEV. = -12.2 DEGREES REMARK 500 LYS C 105 O - C - N ANGL. DEV. = 24.1 DEGREES REMARK 500 GLY C 106 N - CA - C ANGL. DEV. = -21.7 DEGREES REMARK 500 SER C 107 N - CA - CB ANGL. DEV. = 18.9 DEGREES REMARK 500 ALA C 108 CA - C - O ANGL. DEV. = -29.0 DEGREES REMARK 500 ALA C 108 O - C - N ANGL. DEV. = 19.9 DEGREES REMARK 500 ILE C 109 CB - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 ILE C 109 N - CA - CB ANGL. DEV. = -24.0 DEGREES REMARK 500 ILE C 109 CG1 - CB - CG2 ANGL. DEV. = -29.1 DEGREES REMARK 500 ILE C 109 CA - CB - CG1 ANGL. DEV. = 14.8 DEGREES REMARK 500 ILE C 109 CA - CB - CG2 ANGL. DEV. = 15.0 DEGREES REMARK 500 ILE C 109 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 ILE C 109 CA - C - O ANGL. DEV. = 15.1 DEGREES REMARK 500 ILE C 109 CA - C - N ANGL. DEV. = -54.4 DEGREES REMARK 500 THR C 110 C - N - CA ANGL. DEV. = -45.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 8 -120.16 66.04 REMARK 500 ILE B 58 48.88 -88.56 REMARK 500 GLN B 75 3.56 -61.92 REMARK 500 SER B 102 -168.21 -172.62 REMARK 500 ARG B 188 61.47 62.91 REMARK 500 LYS C 5 7.76 83.32 REMARK 500 ASP C 22 -167.06 -121.62 REMARK 500 SER C 37 -39.25 167.98 REMARK 500 ARG C 40 -72.35 -80.65 REMARK 500 LYS C 101 -84.31 -30.26 REMARK 500 LYS C 105 -75.94 -46.35 REMARK 500 ALA C 108 132.75 -170.99 REMARK 500 PHE D 8 -82.35 -107.03 REMARK 500 ARG D 43 30.21 78.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO C 100 LYS C 101 149.04 REMARK 500 GLU C 103 MET C 104 146.82 REMARK 500 LYS C 105 GLY C 106 148.23 REMARK 500 ALA C 108 ILE C 109 128.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL C 34 10.32 REMARK 500 LYS C 101 -21.06 REMARK 500 GLU C 103 -11.00 REMARK 500 LYS C 105 11.39 REMARK 500 ILE C 109 21.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "CC" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K5Y RELATED DB: PDB REMARK 900 STRUCTURE OF THE TRANSLATING 80S RIBOSOME FROM YEAST, OBTAINED BY REMARK 900 DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 15A REMARK 900 CRYO-EM MAP. THIS FILE 1K5Y CONTAINSTHE 60S RIBOSOMAL SUBUNIT. THE REMARK 900 FILE 1K5X CONTAINS THE 40S RIBOSOMAL SUBUNIT, THE P- SITE BOUND REMARK 900 TRNA AND THE MRNA CODON. REMARK 900 RELATED ID: 1G62 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S.CEREVISIAE EIF6 REMARK 900 RELATED ID: 1S1I RELATED DB: PDB REMARK 900 STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST REMARK 900 OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS REMARK 900 INTO A 11.7 A CRYO-EM MAP. THIS FILE, 1S1I, CONTAINS 60S SUBUNIT. REMARK 900 THE 40S RIBOSOMAL SUBUNIT ISIN FILE 1S1H. REMARK 900 RELATED ID: EMD-1705 RELATED DB: EMDB REMARK 900 MECHANISM OF EIF6S ANTI-ASSOCIATION ACTIVITY DBREF 2X7N A 2684 2711 PDB 2X7N 2X7N 2684 2711 DBREF 2X7N B 1 224 UNP Q12522 IF6_YEAST 1 224 DBREF 2X7N C 1 132 UNP P04451 RL23_YEAST 6 137 DBREF 2X7N D 1 56 UNP P04449 RL24A_YEAST 1 56 SEQRES 1 A 28 A C C G U A U A G U A C G SEQRES 2 A 28 A G A G G A A C U A C G G SEQRES 3 A 28 U U SEQRES 1 B 224 MET ALA THR ARG THR GLN PHE GLU ASN SER ASN GLU ILE SEQRES 2 B 224 GLY VAL PHE SER LYS LEU THR ASN THR TYR CYS LEU VAL SEQRES 3 B 224 ALA VAL GLY GLY SER GLU ASN PHE TYR SER ALA PHE GLU SEQRES 4 B 224 ALA GLU LEU GLY ASP ALA ILE PRO ILE VAL HIS THR THR SEQRES 5 B 224 ILE ALA GLY THR ARG ILE ILE GLY ARG MET THR ALA GLY SEQRES 6 B 224 ASN ARG ARG GLY LEU LEU VAL PRO THR GLN THR THR ASP SEQRES 7 B 224 GLN GLU LEU GLN HIS LEU ARG ASN SER LEU PRO ASP SER SEQRES 8 B 224 VAL LYS ILE GLN ARG VAL GLU GLU ARG LEU SER ALA LEU SEQRES 9 B 224 GLY ASN VAL ILE CYS CYS ASN ASP TYR VAL ALA LEU VAL SEQRES 10 B 224 HIS PRO ASP ILE ASP ARG GLU THR GLU GLU LEU ILE SER SEQRES 11 B 224 ASP VAL LEU GLY VAL GLU VAL PHE ARG GLN THR ILE SER SEQRES 12 B 224 GLY ASN ILE LEU VAL GLY SER TYR CYS SER LEU SER ASN SEQRES 13 B 224 GLN GLY GLY LEU VAL HIS PRO GLN THR SER VAL GLN ASP SEQRES 14 B 224 GLN GLU GLU LEU SER SER LEU LEU GLN VAL PRO LEU VAL SEQRES 15 B 224 ALA GLY THR VAL ASN ARG GLY SER SER VAL VAL GLY ALA SEQRES 16 B 224 GLY MET VAL VAL ASN ASP TYR LEU ALA VAL THR GLY LEU SEQRES 17 B 224 ASP THR THR ALA PRO GLU LEU SER VAL ILE GLU SER ILE SEQRES 18 B 224 PHE ARG LEU SEQRES 1 C 132 ALA GLN GLY THR LYS PHE ARG ILE SER LEU GLY LEU PRO SEQRES 2 C 132 VAL GLY ALA ILE MET ASN CYS ALA ASP ASN SER GLY ALA SEQRES 3 C 132 ARG ASN LEU TYR ILE ILE ALA VAL LYS GLY SER GLY SER SEQRES 4 C 132 ARG LEU ASN ARG LEU PRO ALA ALA SER LEU GLY ASP MET SEQRES 5 C 132 VAL MET ALA THR VAL LYS LYS GLY LYS PRO GLU LEU ARG SEQRES 6 C 132 LYS LYS VAL MET PRO ALA ILE VAL VAL ARG GLN ALA LYS SEQRES 7 C 132 SER TRP ARG ARG ARG ASP GLY VAL PHE LEU TYR PHE GLU SEQRES 8 C 132 ASP ASN ALA GLY VAL ILE ALA ASN PRO LYS GLY GLU MET SEQRES 9 C 132 LYS GLY SER ALA ILE THR GLY PRO VAL GLY LYS GLU CYS SEQRES 10 C 132 ALA ASP LEU TRP PRO ARG VAL ALA SER ASN SER GLY VAL SEQRES 11 C 132 VAL VAL SEQRES 1 D 56 MET LYS VAL GLU ILE ASP SER PHE SER GLY ALA LYS ILE SEQRES 2 D 56 TYR PRO GLY ARG GLY THR LEU PHE VAL ARG GLY ASP SER SEQRES 3 D 56 LYS ILE PHE ARG PHE GLN ASN SER LYS SER ALA SER LEU SEQRES 4 D 56 PHE LYS GLN ARG LYS ASN PRO ARG ARG ILE ALA TRP THR SEQRES 5 D 56 VAL LEU PHE ARG HELIX 1 1 GLU B 12 PHE B 16 1 5 HELIX 2 2 SER B 31 GLY B 43 1 13 HELIX 3 3 ILE B 58 THR B 63 1 6 HELIX 4 4 THR B 77 LEU B 88 1 12 HELIX 5 5 ALA B 103 VAL B 107 1 5 HELIX 6 6 ASP B 122 GLY B 134 1 13 HELIX 7 7 LEU B 147 SER B 150 5 4 HELIX 8 8 SER B 166 GLN B 178 1 13 HELIX 9 9 VAL B 192 GLY B 196 1 5 HELIX 10 10 THR B 211 PHE B 222 1 12 HELIX 11 11 LYS C 115 TRP C 121 1 7 HELIX 12 12 TRP C 121 SER C 126 1 6 HELIX 13 13 ASN D 33 ARG D 43 1 11 SHEET 1 BA 3 ALA B 2 THR B 5 0 SHEET 2 BA 3 ALA B 204 GLY B 207 1 O ALA B 204 N THR B 3 SHEET 3 BA 3 MET B 197 VAL B 199 -1 O VAL B 198 N VAL B 205 SHEET 1 BB 3 SER B 17 LEU B 19 0 SHEET 2 BB 3 CYS B 24 ALA B 27 -1 O LEU B 25 N LYS B 18 SHEET 3 BB 3 ILE B 48 THR B 51 1 O VAL B 49 N VAL B 26 SHEET 1 BC 3 ALA B 64 GLY B 65 0 SHEET 2 BC 3 GLY B 69 PRO B 73 -1 O LEU B 71 N ALA B 64 SHEET 3 BC 3 LYS B 93 VAL B 97 1 O LYS B 93 N LEU B 70 SHEET 1 BD 3 ILE B 108 CYS B 110 0 SHEET 2 BD 3 VAL B 114 VAL B 117 -1 O LEU B 116 N CYS B 109 SHEET 3 BD 3 GLU B 136 ARG B 139 1 O GLU B 136 N ALA B 115 SHEET 1 BE 3 CYS B 152 LEU B 154 0 SHEET 2 BE 3 GLY B 159 VAL B 161 -1 O LEU B 160 N SER B 153 SHEET 3 BE 3 LEU B 181 ALA B 183 1 O VAL B 182 N VAL B 161 SHEET 1 CA 3 ARG C 7 ILE C 8 0 SHEET 2 CA 3 TRP C 80 ARG C 81 -1 O ARG C 81 N ARG C 7 SHEET 3 CA 3 PHE C 87 LEU C 88 -1 O LEU C 88 N TRP C 80 SHEET 1 CB 2 LEU C 12 PRO C 13 0 SHEET 2 CB 2 ALA C 46 ALA C 47 -1 O ALA C 47 N LEU C 12 SHEET 1 CC 6 ILE C 17 CYS C 20 0 SHEET 2 CC 6 ALA C 26 GLY C 36 -1 O ARG C 27 N CYS C 20 SHEET 3 CC 6 MET C 52 GLY C 60 -1 O MET C 52 N LYS C 35 SHEET 4 CC 6 VAL C 68 ARG C 75 -1 O MET C 69 N ALA C 55 SHEET 5 CC 6 ALA C 94 ILE C 97 -1 O ALA C 94 N ARG C 75 SHEET 6 CC 6 ILE C 17 CYS C 20 1 O ASN C 19 N GLY C 95 SHEET 1 CD 2 PRO C 112 GLY C 114 0 SHEET 2 CD 2 VAL C 130 VAL C 132 1 O VAL C 130 N VAL C 113 SHEET 1 DA 2 THR D 19 VAL D 22 0 SHEET 2 DA 2 ILE D 28 PHE D 31 -1 O PHE D 29 N PHE D 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000