PDB Short entry for 2XLK HEADER HYDROLASE/RNA 21-JUL-10 2XLK TITLE CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, ORTHORHOMBIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSY4 ENDORIBONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-R(*CP*UP*GP*CP*CP*GP*UP*AP*UP*AP*GP*GP*CP*A*DG*C)-3'; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: PA14 CRRNA HAIRPIN; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: 2-DEOXY MODIFICATION AT G20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208963; SOURCE 4 STRAIN: UCBPP-PA14; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHMGWA; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 13 ORGANISM_TAXID: 208963 KEYWDS HYDROLASE-RNA COMPLEX, ENDORIBONUCLEASE, CRISPR EXPDTA X-RAY DIFFRACTION AUTHOR R.E.HAURWITZ,M.JINEK,B.WIEDENHEFT,K.ZHOU,J.A.DOUDNA REVDAT 3 20-DEC-23 2XLK 1 LINK REVDAT 2 29-SEP-10 2XLK 1 COMPND SOURCE SEQRES MODRES REVDAT 2 2 1 HET HETNAM FORMUL LINK REVDAT 2 3 1 ATOM ANISOU HETATM CONECT REVDAT 1 22-SEP-10 2XLK 0 JRNL AUTH R.E.HAURWITZ,M.JINEK,B.WIEDENHEFT,K.ZHOU,J.A.DOUDNA JRNL TITL SEQUENCE- AND STRUCTURE-SPECIFIC RNA PROCESSING BY A CRISPR JRNL TITL 2 ENDONUCLEASE. JRNL REF SCIENCE V. 329 1355 2010 JRNL REFN ISSN 0036-8075 JRNL PMID 20829488 JRNL DOI 10.1126/SCIENCE.1192272 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 43284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.4643 - 4.4511 1.00 2962 156 0.1796 0.1932 REMARK 3 2 4.4511 - 3.5330 1.00 2832 150 0.1537 0.1863 REMARK 3 3 3.5330 - 3.0864 1.00 2782 146 0.1705 0.1930 REMARK 3 4 3.0864 - 2.8042 1.00 2775 146 0.1929 0.2263 REMARK 3 5 2.8042 - 2.6032 1.00 2756 145 0.1989 0.2365 REMARK 3 6 2.6032 - 2.4497 1.00 2748 145 0.1913 0.2639 REMARK 3 7 2.4497 - 2.3270 1.00 2732 143 0.1977 0.2408 REMARK 3 8 2.3270 - 2.2257 1.00 2726 144 0.1787 0.2234 REMARK 3 9 2.2257 - 2.1401 1.00 2748 145 0.1821 0.2028 REMARK 3 10 2.1401 - 2.0662 1.00 2717 143 0.1766 0.2359 REMARK 3 11 2.0662 - 2.0016 1.00 2684 141 0.1861 0.2091 REMARK 3 12 2.0016 - 1.9444 1.00 2748 144 0.1833 0.2408 REMARK 3 13 1.9444 - 1.8932 1.00 2692 141 0.1872 0.2032 REMARK 3 14 1.8932 - 1.8470 1.00 2704 142 0.2103 0.2570 REMARK 3 15 1.8470 - 1.8050 0.93 2514 133 0.2345 0.3004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 29.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36780 REMARK 3 B22 (A**2) : 4.14190 REMARK 3 B33 (A**2) : -3.77420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3791 REMARK 3 ANGLE : 1.086 5275 REMARK 3 CHIRALITY : 0.070 585 REMARK 3 PLANARITY : 0.005 587 REMARK 3 DIHEDRAL : 14.989 1534 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND NOT RESID 109:139 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3319 26.2687 30.9088 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.1851 REMARK 3 T33: 0.1201 T12: 0.0176 REMARK 3 T13: -0.0007 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.2950 L22: 0.4688 REMARK 3 L33: 0.5745 L12: 0.2149 REMARK 3 L13: 0.2070 L23: 0.0151 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: -0.1178 S13: 0.0240 REMARK 3 S21: -0.0489 S22: -0.0801 S23: -0.0142 REMARK 3 S31: -0.0293 S32: 0.0633 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 109:138 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8543 21.4368 64.0839 REMARK 3 T TENSOR REMARK 3 T11: 0.3148 T22: 0.1724 REMARK 3 T33: 0.2035 T12: -0.0791 REMARK 3 T13: -0.0138 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.0033 L22: 0.0828 REMARK 3 L33: 0.0336 L12: 0.0118 REMARK 3 L13: 0.0240 L23: -0.0558 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: 0.0442 S13: 0.0441 REMARK 3 S21: 0.0228 S22: -0.2860 S23: -0.2447 REMARK 3 S31: 0.1516 S32: -0.0261 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND NOT RESID 109:135 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8665 8.9573 10.3690 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0583 REMARK 3 T33: 0.1017 T12: 0.0117 REMARK 3 T13: 0.0020 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.2761 L22: 1.0548 REMARK 3 L33: 0.5517 L12: -0.0320 REMARK 3 L13: -0.0786 L23: 0.2248 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: -0.0427 S13: -0.0054 REMARK 3 S21: -0.0234 S22: 0.0948 S23: -0.0106 REMARK 3 S31: 0.0820 S32: -0.0241 S33: 0.1513 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 109:135 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7493 -12.1960 -13.9495 REMARK 3 T TENSOR REMARK 3 T11: 0.4856 T22: 0.1467 REMARK 3 T33: 0.2132 T12: 0.0454 REMARK 3 T13: 0.1108 T23: -0.0922 REMARK 3 L TENSOR REMARK 3 L11: 0.0465 L22: -0.0147 REMARK 3 L33: 0.0336 L12: -0.0164 REMARK 3 L13: -0.0054 L23: 0.0055 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.0011 S13: -0.2995 REMARK 3 S21: -0.5240 S22: 0.2156 S23: -0.1126 REMARK 3 S31: 0.2332 S32: 0.3406 S33: 0.0054 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 14.1183 28.1818 55.4057 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.2871 REMARK 3 T33: 0.1599 T12: 0.0504 REMARK 3 T13: -0.0029 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.1509 L22: 0.0358 REMARK 3 L33: 0.0663 L12: -0.0254 REMARK 3 L13: 0.1217 L23: 0.0408 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: 0.2359 S13: 0.0591 REMARK 3 S21: 0.1511 S22: 0.0584 S23: -0.0078 REMARK 3 S31: 0.1309 S32: -0.0251 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -8.4579 41.0234 9.9780 REMARK 3 T TENSOR REMARK 3 T11: 0.4622 T22: 0.1211 REMARK 3 T33: 0.1162 T12: -0.0142 REMARK 3 T13: -0.0976 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.4432 L22: 0.2869 REMARK 3 L33: 0.2474 L12: 0.2897 REMARK 3 L13: -0.2831 L23: -0.0718 REMARK 3 S TENSOR REMARK 3 S11: 0.2133 S12: 0.0028 S13: 0.1005 REMARK 3 S21: 0.6708 S22: -0.0126 S23: -0.0537 REMARK 3 S31: -0.0442 S32: -0.0311 S33: 0.0912 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99992 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43284 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 69.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XLI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 160 MM SODIUM ACETATE PH 4.6, 18% REMARK 280 (W/V) PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.03000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.03000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 22 TO CYS REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 22 TO CYS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PHE A -1 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 PRO B 13 REMARK 465 GLU B 14 REMARK 465 PHE B 15 REMARK 465 THR B 134 REMARK 465 VAL B 135 REMARK 465 ALA B 136 REMARK 465 ARG B 137 REMARK 465 THR B 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 THR A 138 OG1 CG2 REMARK 470 C C 21 C5' C4' O4' C3' O3' C2' O2' REMARK 470 C C 21 C1' N1 C2 O2 N3 C4 N4 REMARK 470 C C 21 C5 C6 REMARK 470 C D 21 C5' C4' O4' C3' O3' C2' O2' REMARK 470 C D 21 C1' N1 C2 O2 N3 C4 N4 REMARK 470 C D 21 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 20 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG D 20 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 35.49 -140.06 REMARK 500 LEU A 79 -13.56 -140.76 REMARK 500 ARG B 51 11.72 -146.27 REMARK 500 PRO B 74 39.34 -83.95 REMARK 500 ASP B 140 67.05 -111.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XLI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, MONOCLINIC FORM REMARK 900 RELATED ID: 2XLJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, HEXAGONAL FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE GSFT AT THE N-TERMINUS IS DERIVED FROM THE REMARK 999 EXPRESSION VECTOR. THE DOWNSTREAM SEQUENCE REMARK 999 MDHYLDIRLRPDPEFPPAQL IS NOT PRESENT IN THE GB YP_790814 ENTRY REMARK 999 DUE TO MISANNOTATED METHIONINE START CODON. REMARK 999 THE SEQUENCE CONFLICT STEMS A3KUJ4 CORRESPONDING TO A REMARK 999 DIFFERENT P. AERUGINOSA STRAIN. DBREF 2XLK A 1 187 UNP A3KUJ4 A3KUJ4_PSEAE 1 187 DBREF 2XLK B 1 187 UNP A3KUJ4 A3KUJ4_PSEAE 1 187 DBREF 2XLK C 6 20 PDB 2XLK 2XLK 6 20 DBREF 2XLK D 6 20 PDB 2XLK 2XLK 6 20 SEQADV 2XLK GLY A -3 UNP A3KUJ4 EXPRESSION TAG SEQADV 2XLK SER A -2 UNP B3G159 EXPRESSION TAG SEQADV 2XLK PHE A -1 UNP A3KUJ4 EXPRESSION TAG SEQADV 2XLK THR A 0 UNP A3KUJ4 EXPRESSION TAG SEQADV 2XLK CYS A 22 UNP A3KUJ4 SER 22 ENGINEERED MUTATION SEQADV 2XLK VAL A 166 UNP A3KUJ4 ALA 166 CONFLICT SEQADV 2XLK GLY B -3 UNP A3KUJ4 EXPRESSION TAG SEQADV 2XLK SER B -2 UNP A3KUJ4 EXPRESSION TAG SEQADV 2XLK PHE B -1 UNP A3KUJ4 EXPRESSION TAG SEQADV 2XLK THR B 0 UNP A3KUJ4 EXPRESSION TAG SEQADV 2XLK CYS B 22 UNP A3KUJ4 SER 22 ENGINEERED MUTATION SEQADV 2XLK VAL B 166 UNP A3KUJ4 ALA 166 CONFLICT SEQRES 1 A 191 GLY SER PHE THR MET ASP HIS TYR LEU ASP ILE ARG LEU SEQRES 2 A 191 ARG PRO ASP PRO GLU PHE PRO PRO ALA GLN LEU MET CYS SEQRES 3 A 191 VAL LEU PHE GLY LYS LEU HIS GLN ALA LEU VAL ALA GLN SEQRES 4 A 191 GLY GLY ASP ARG ILE GLY VAL SER PHE PRO ASP LEU ASP SEQRES 5 A 191 GLU SER ARG SER ARG LEU GLY GLU ARG LEU ARG ILE HIS SEQRES 6 A 191 ALA SER ALA ASP ASP LEU ARG ALA LEU LEU ALA ARG PRO SEQRES 7 A 191 TRP LEU GLU GLY LEU ARG ASP HIS LEU GLN PHE GLY GLU SEQRES 8 A 191 PRO ALA VAL VAL PRO HIS PRO THR PRO TYR ARG GLN VAL SEQRES 9 A 191 SER ARG VAL GLN ALA LYS SER ASN PRO GLU ARG LEU ARG SEQRES 10 A 191 ARG ARG LEU MET ARG ARG HIS ASP LEU SER GLU GLU GLU SEQRES 11 A 191 ALA ARG LYS ARG ILE PRO ASP THR VAL ALA ARG THR LEU SEQRES 12 A 191 ASP LEU PRO PHE VAL THR LEU ARG SER GLN SER THR GLY SEQRES 13 A 191 GLN HIS PHE ARG LEU PHE ILE ARG HIS GLY PRO LEU GLN SEQRES 14 A 191 VAL THR ALA GLU GLU GLY GLY PHE THR CYS TYR GLY LEU SEQRES 15 A 191 SER LYS GLY GLY PHE VAL PRO TRP PHE SEQRES 1 B 191 GLY SER PHE THR MET ASP HIS TYR LEU ASP ILE ARG LEU SEQRES 2 B 191 ARG PRO ASP PRO GLU PHE PRO PRO ALA GLN LEU MET CYS SEQRES 3 B 191 VAL LEU PHE GLY LYS LEU HIS GLN ALA LEU VAL ALA GLN SEQRES 4 B 191 GLY GLY ASP ARG ILE GLY VAL SER PHE PRO ASP LEU ASP SEQRES 5 B 191 GLU SER ARG SER ARG LEU GLY GLU ARG LEU ARG ILE HIS SEQRES 6 B 191 ALA SER ALA ASP ASP LEU ARG ALA LEU LEU ALA ARG PRO SEQRES 7 B 191 TRP LEU GLU GLY LEU ARG ASP HIS LEU GLN PHE GLY GLU SEQRES 8 B 191 PRO ALA VAL VAL PRO HIS PRO THR PRO TYR ARG GLN VAL SEQRES 9 B 191 SER ARG VAL GLN ALA LYS SER ASN PRO GLU ARG LEU ARG SEQRES 10 B 191 ARG ARG LEU MET ARG ARG HIS ASP LEU SER GLU GLU GLU SEQRES 11 B 191 ALA ARG LYS ARG ILE PRO ASP THR VAL ALA ARG THR LEU SEQRES 12 B 191 ASP LEU PRO PHE VAL THR LEU ARG SER GLN SER THR GLY SEQRES 13 B 191 GLN HIS PHE ARG LEU PHE ILE ARG HIS GLY PRO LEU GLN SEQRES 14 B 191 VAL THR ALA GLU GLU GLY GLY PHE THR CYS TYR GLY LEU SEQRES 15 B 191 SER LYS GLY GLY PHE VAL PRO TRP PHE SEQRES 1 C 16 C U G C C G U A U A G G C SEQRES 2 C 16 A DG C SEQRES 1 D 16 C U G C C G U A U A G G C SEQRES 2 D 16 A DG C FORMUL 5 HOH *413(H2 O) HELIX 1 1 PRO A 16 GLY A 36 1 21 HELIX 2 2 SER A 63 ALA A 72 1 10 HELIX 3 3 LEU A 76 ASP A 81 5 6 HELIX 4 4 ASN A 108 ASP A 121 1 14 HELIX 5 5 SER A 123 ILE A 131 1 9 HELIX 6 6 PRO B 16 GLY B 36 1 21 HELIX 7 7 GLU B 49 SER B 52 5 4 HELIX 8 8 SER B 63 ARG B 73 1 11 HELIX 9 9 LEU B 79 ASP B 81 5 3 HELIX 10 10 ASN B 108 ASP B 121 1 14 HELIX 11 11 SER B 123 ILE B 131 1 9 SHEET 1 AA 4 GLY A 41 SER A 43 0 SHEET 2 AA 4 ARG A 57 ALA A 62 -1 O ARG A 59 N SER A 43 SHEET 3 AA 4 HIS A 3 LEU A 9 -1 O HIS A 3 N ALA A 62 SHEET 4 AA 4 LEU A 83 GLN A 84 -1 O GLN A 84 N ARG A 8 SHEET 1 AB 4 GLY A 41 SER A 43 0 SHEET 2 AB 4 ARG A 57 ALA A 62 -1 O ARG A 59 N SER A 43 SHEET 3 AB 4 HIS A 3 LEU A 9 -1 O HIS A 3 N ALA A 62 SHEET 4 AB 4 ALA A 89 VAL A 90 -1 O ALA A 89 N TYR A 4 SHEET 1 AC 2 LEU A 83 GLN A 84 0 SHEET 2 AC 2 HIS A 3 LEU A 9 -1 O ARG A 8 N GLN A 84 SHEET 1 AD 2 TYR A 97 ARG A 98 0 SHEET 2 AD 2 VAL A 184 PRO A 185 -1 O VAL A 184 N ARG A 98 SHEET 1 AE 3 VAL A 100 VAL A 103 0 SHEET 2 AE 3 HIS A 154 HIS A 161 -1 O PHE A 158 N VAL A 103 SHEET 3 AE 3 PHE A 143 ARG A 147 -1 O VAL A 144 N LEU A 157 SHEET 1 BA 4 GLY B 41 SER B 43 0 SHEET 2 BA 4 ARG B 57 ALA B 62 -1 O ARG B 59 N SER B 43 SHEET 3 BA 4 HIS B 3 LEU B 9 -1 O HIS B 3 N ALA B 62 SHEET 4 BA 4 LEU B 83 PHE B 85 -1 O GLN B 84 N ARG B 8 SHEET 1 BB 4 GLY B 41 SER B 43 0 SHEET 2 BB 4 ARG B 57 ALA B 62 -1 O ARG B 59 N SER B 43 SHEET 3 BB 4 HIS B 3 LEU B 9 -1 O HIS B 3 N ALA B 62 SHEET 4 BB 4 ALA B 89 VAL B 90 -1 O ALA B 89 N TYR B 4 SHEET 1 BC 2 LEU B 83 PHE B 85 0 SHEET 2 BC 2 HIS B 3 LEU B 9 -1 O ARG B 8 N GLN B 84 SHEET 1 BD 2 TYR B 97 ARG B 98 0 SHEET 2 BD 2 VAL B 184 PRO B 185 -1 O VAL B 184 N ARG B 98 SHEET 1 BE 3 VAL B 100 VAL B 103 0 SHEET 2 BE 3 HIS B 154 HIS B 161 -1 O PHE B 158 N VAL B 103 SHEET 3 BE 3 PHE B 143 ARG B 147 -1 O VAL B 144 N LEU B 157 LINK O3' A C 19 P DG C 20 1555 1555 1.59 LINK O3' DG C 20 P C C 21 1555 1555 1.61 LINK O3' A D 19 P DG D 20 1555 1555 1.60 LINK O3' DG D 20 P C D 21 1555 1555 1.61 CISPEP 1 HIS A 93 PRO A 94 0 0.02 CISPEP 2 HIS B 93 PRO B 94 0 -0.57 CRYST1 40.060 78.910 145.940 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024963 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006852 0.00000