PDB Short entry for 2XOA HEADER METAL TRANSPORT 10-AUG-10 2XOA TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL THREE DOMAINS OF THE TITLE 2 SKELETAL MUSCLE RYANODINE RECEPTOR (RYR1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RYANODINE RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DISEASE HOT SPOT, RESIDUES 1-559; COMPND 5 SYNONYM: RYR-1, RYR1, SKELETAL MUSCLE-TYPE RYANODINE RECEPTOR, COMPND 6 SKELETAL MUSCLE CALCIUM RELEASE CHANNEL; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: SKELETAL MUSCLE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3 PLACI; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28HMT KEYWDS METAL TRANSPORT, CALCIUM CHANNEL, ION CHANNEL, MEMBRANE PROTEIN, KEYWDS 2 MALIGNANT HYPERTHERMIA, CARDIAC ARRHYTHMIA EXPDTA X-RAY DIFFRACTION AUTHOR C.TUNG,P.A.LOBO,L.KIMLICKA,F.VAN PETEGEM REVDAT 3 01-DEC-10 2XOA 1 JRNL REVDAT 2 17-NOV-10 2XOA 1 JRNL REMARK REVDAT 1 10-NOV-10 2XOA 0 JRNL AUTH C.C.TUNG,P.A.LOBO,L.KIMLICKA,F.VAN PETEGEM JRNL TITL THE AMINO-TERMINAL DISEASE HOTSPOT OF RYANODINE JRNL TITL 2 RECEPTORS FORMS A CYTOPLASMIC VESTIBULE. JRNL REF NATURE V. 468 585 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 21048710 JRNL DOI 10.1038/NATURE09471 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 55647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21032 REMARK 3 R VALUE (WORKING SET) : 0.20909 REMARK 3 FREE R VALUE : 0.23373 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2930 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.500 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.565 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4106 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.275 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.288 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3558 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.290 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99 REMARK 3 B22 (A**2) : 1.99 REMARK 3 B33 (A**2) : -2.98 REMARK 3 B12 (A**2) : 0.99 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.721 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3623 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4903 ; 1.788 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 7.093 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;36.043 ;23.312 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;18.604 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2682 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2281 ; 1.019 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3628 ; 1.987 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 2.928 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1274 ; 4.757 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3980 -5.1370 109.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.2819 REMARK 3 T33: 0.1153 T12: 0.1255 REMARK 3 T13: 0.0400 T23: -0.0737 REMARK 3 L TENSOR REMARK 3 L11: 1.8094 L22: 0.7797 REMARK 3 L33: 1.5723 L12: -0.2583 REMARK 3 L13: -0.7970 L23: -0.1852 REMARK 3 S TENSOR REMARK 3 S11: 0.3014 S12: 0.1824 S13: 0.1235 REMARK 3 S21: -0.1258 S22: -0.0953 S23: -0.0537 REMARK 3 S31: 0.0852 S32: 0.2592 S33: -0.2062 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3350 -13.4450 125.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.0703 REMARK 3 T33: 0.1005 T12: 0.0239 REMARK 3 T13: -0.0280 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.1475 L22: 0.4997 REMARK 3 L33: 0.6003 L12: 0.0020 REMARK 3 L13: 0.1261 L23: 0.0702 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: -0.0055 S13: -0.0835 REMARK 3 S21: -0.0078 S22: -0.0042 S23: -0.0457 REMARK 3 S31: 0.0880 S32: 0.0016 S33: -0.0974 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 395 A 532 REMARK 3 ORIGIN FOR THE GROUP (A): 38.7080 -5.3560 140.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.2583 REMARK 3 T33: 0.0977 T12: 0.0428 REMARK 3 T13: -0.0051 T23: -0.1173 REMARK 3 L TENSOR REMARK 3 L11: 1.8786 L22: 1.1457 REMARK 3 L33: 2.3405 L12: -0.3773 REMARK 3 L13: 1.0384 L23: -0.3888 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: -0.1319 S13: 0.0293 REMARK 3 S21: -0.0523 S22: 0.1619 S23: -0.0100 REMARK 3 S31: 0.1087 S32: 0.3922 S33: -0.2375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. DISORDERED LOOPS WERE NOT MODELED. REMARK 3 DISORDERED SIDE CHAINS WERE NOT MODELED. REMARK 3 ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS REMARK 3 ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS REMARK 4 REMARK 4 2XOA COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-10. REMARK 100 THE PDBE ID CODE IS EBI-45006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.50 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 11.3 REMARK 200 R MERGE (I) : 0.11 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.5 REMARK 200 R MERGE FOR SHELL (I) : 0.60 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 82.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.1 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 85.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.30571 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 100.40000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 85.40000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 49.30571 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 100.40000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 85.40000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 49.30571 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.40000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 85.40000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 49.30571 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 100.40000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 85.40000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 49.30571 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 100.40000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 85.40000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 49.30571 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 100.40000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 98.61143 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 200.80000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 98.61143 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 200.80000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 98.61143 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 200.80000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 98.61143 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 200.80000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 98.61143 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 200.80000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 98.61143 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 200.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 ASP A 9 REMARK 465 GLU A 10 REMARK 465 VAL A 11 REMARK 465 THR A 85 REMARK 465 VAL A 86 REMARK 465 GLU A 87 REMARK 465 ALA A 88 REMARK 465 GLY A 89 REMARK 465 VAL A 90 REMARK 465 GLU A 91 REMARK 465 SER A 92 REMARK 465 SER A 93 REMARK 465 GLN A 94 REMARK 465 GLY A 95 REMARK 465 GLY A 96 REMARK 465 SER A 126 REMARK 465 MET A 127 REMARK 465 THR A 128 REMARK 465 ASP A 129 REMARK 465 ALA A 185 REMARK 465 SER A 186 REMARK 465 GLY A 187 REMARK 465 GLU A 188 REMARK 465 HIS A 226 REMARK 465 MET A 227 REMARK 465 ASP A 228 REMARK 465 ASP A 324 REMARK 465 THR A 325 REMARK 465 ALA A 326 REMARK 465 PRO A 327 REMARK 465 PRO A 362 REMARK 465 ASP A 363 REMARK 465 PRO A 364 REMARK 465 LYS A 365 REMARK 465 ALA A 366 REMARK 465 LEU A 367 REMARK 465 ARG A 368 REMARK 465 LEU A 369 REMARK 465 GLY A 370 REMARK 465 GLY A 427 REMARK 465 SER A 428 REMARK 465 GLY A 429 REMARK 465 PRO A 430 REMARK 465 PRO A 431 REMARK 465 ALA A 432 REMARK 465 GLY A 433 REMARK 465 PRO A 434 REMARK 465 ALA A 435 REMARK 465 SER A 456 REMARK 465 GLU A 457 REMARK 465 GLU A 458 REMARK 465 LEU A 459 REMARK 465 GLN A 460 REMARK 465 HIS A 461 REMARK 465 GLU A 462 REMARK 465 GLU A 463 REMARK 465 LYS A 464 REMARK 465 ALA A 500 REMARK 465 ALA A 501 REMARK 465 HIS A 502 REMARK 465 PHE A 503 REMARK 465 ALA A 504 REMARK 465 GLU A 505 REMARK 465 ASN A 533 REMARK 465 ARG A 534 REMARK 465 ALA A 535 REMARK 465 ASN A 536 REMARK 465 CYS A 537 REMARK 465 ALA A 538 REMARK 465 LEU A 539 REMARK 465 PHE A 540 REMARK 465 SER A 541 REMARK 465 THR A 542 REMARK 465 ASN A 543 REMARK 465 LEU A 544 REMARK 465 ASP A 545 REMARK 465 TRP A 546 REMARK 465 VAL A 547 REMARK 465 VAL A 548 REMARK 465 SER A 549 REMARK 465 LYS A 550 REMARK 465 LEU A 551 REMARK 465 ASP A 552 REMARK 465 ARG A 553 REMARK 465 LEU A 554 REMARK 465 GLU A 555 REMARK 465 ALA A 556 REMARK 465 SER A 557 REMARK 465 SER A 558 REMARK 465 GLY A 559 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 GLN A 56 CG CD OE1 NE2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 ASP A 140 CG OD1 OD2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 ASP A 237 CG OD1 OD2 REMARK 470 ASP A 239 CG OD1 OD2 REMARK 470 GLN A 241 CG CD OE1 NE2 REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 ASP A 296 CG OD1 OD2 REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 509 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 209 CA - CB - SG ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 257 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 261 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 281 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 281 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 LEU A 323 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 MET A 384 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 -15.94 82.16 REMARK 500 ASN A 44 108.36 -167.56 REMARK 500 HIS A 98 74.39 -109.30 REMARK 500 ALA A 141 40.34 -89.02 REMARK 500 SER A 207 -159.41 -127.62 REMARK 500 GLU A 211 127.51 -38.53 REMARK 500 ASP A 237 12.09 81.23 REMARK 500 ASP A 240 -38.60 -27.00 REMARK 500 CYS A 253 -8.98 -58.04 REMARK 500 ILE A 267 -64.28 -108.59 REMARK 500 ALA A 307 56.75 -95.31 REMARK 500 GLU A 332 52.31 -117.61 REMARK 500 GLU A 338 -36.85 -135.15 REMARK 500 ALA A 360 -88.27 -119.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 395 22.3 L L OUTSIDE RANGE REMARK 500 THR A 499 24.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BCX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CALMODULIN IN COMPLEX REMARK 900 WITH A RYANODINE RECEPTOR PEPTIDE DBREF 2XOA A 1 559 UNP P11716 RYR1_RABIT 1 559 SEQRES 1 A 559 MET GLY ASP GLY GLY GLU GLY GLU ASP GLU VAL GLN PHE SEQRES 2 A 559 LEU ARG THR ASP ASP GLU VAL VAL LEU GLN CYS SER ALA SEQRES 3 A 559 THR VAL LEU LYS GLU GLN LEU LYS LEU CYS LEU ALA ALA SEQRES 4 A 559 GLU GLY PHE GLY ASN ARG LEU CYS PHE LEU GLU PRO THR SEQRES 5 A 559 SER ASN ALA GLN ASN VAL PRO PRO ASP LEU ALA ILE CYS SEQRES 6 A 559 CYS PHE THR LEU GLU GLN SER LEU SER VAL ARG ALA LEU SEQRES 7 A 559 GLN GLU MET LEU ALA ASN THR VAL GLU ALA GLY VAL GLU SEQRES 8 A 559 SER SER GLN GLY GLY GLY HIS ARG THR LEU LEU TYR GLY SEQRES 9 A 559 HIS ALA ILE LEU LEU ARG HIS ALA HIS SER ARG MET TYR SEQRES 10 A 559 LEU SER CYS LEU THR THR SER ARG SER MET THR ASP LYS SEQRES 11 A 559 LEU ALA PHE ASP VAL GLY LEU GLN GLU ASP ALA THR GLY SEQRES 12 A 559 GLU ALA CYS TRP TRP THR MET HIS PRO ALA SER LYS GLN SEQRES 13 A 559 ARG SER GLU GLY GLU LYS VAL ARG VAL GLY ASP ASP LEU SEQRES 14 A 559 ILE LEU VAL SER VAL SER SER GLU ARG TYR LEU HIS LEU SEQRES 15 A 559 SER THR ALA SER GLY GLU LEU GLN VAL ASP ALA SER PHE SEQRES 16 A 559 MET GLN THR LEU TRP ASN MET ASN PRO ILE CYS SER CYS SEQRES 17 A 559 CYS GLU GLU GLY TYR VAL THR GLY GLY HIS VAL LEU ARG SEQRES 18 A 559 LEU PHE HIS GLY HIS MET ASP GLU CYS LEU THR ILE SER SEQRES 19 A 559 ALA ALA ASP SER ASP ASP GLN ARG ARG LEU VAL TYR TYR SEQRES 20 A 559 GLU GLY GLY ALA VAL CYS THR HIS ALA ARG SER LEU TRP SEQRES 21 A 559 ARG LEU GLU PRO LEU ARG ILE SER TRP SER GLY SER HIS SEQRES 22 A 559 LEU ARG TRP GLY GLN PRO LEU ARG ILE ARG HIS VAL THR SEQRES 23 A 559 THR GLY ARG TYR LEU ALA LEU THR GLU ASP GLN GLY LEU SEQRES 24 A 559 VAL VAL VAL ASP ALA CYS LYS ALA HIS THR LYS ALA THR SEQRES 25 A 559 SER PHE CYS PHE ARG VAL SER LYS GLU LYS LEU ASP THR SEQRES 26 A 559 ALA PRO LYS ARG ASP VAL GLU GLY MET GLY PRO PRO GLU SEQRES 27 A 559 ILE LYS TYR GLY GLU SER LEU CYS PHE VAL GLN HIS VAL SEQRES 28 A 559 ALA SER GLY LEU TRP LEU THR TYR ALA ALA PRO ASP PRO SEQRES 29 A 559 LYS ALA LEU ARG LEU GLY VAL LEU LYS LYS LYS ALA ILE SEQRES 30 A 559 LEU HIS GLN GLU GLY HIS MET ASP ASP ALA LEU PHE LEU SEQRES 31 A 559 THR ARG CYS GLN GLN GLU GLU SER GLN ALA ALA ARG MET SEQRES 32 A 559 ILE HIS SER THR ALA GLY LEU TYR ASN GLN PHE ILE LYS SEQRES 33 A 559 GLY LEU ASP SER PHE SER GLY LYS PRO ARG GLY SER GLY SEQRES 34 A 559 PRO PRO ALA GLY PRO ALA LEU PRO ILE GLU ALA VAL ILE SEQRES 35 A 559 LEU SER LEU GLN ASP LEU ILE GLY TYR PHE GLU PRO PRO SEQRES 36 A 559 SER GLU GLU LEU GLN HIS GLU GLU LYS GLN SER LYS LEU SEQRES 37 A 559 ARG SER LEU ARG ASN ARG GLN SER LEU PHE GLN GLU GLU SEQRES 38 A 559 GLY MET LEU SER LEU VAL LEU ASN CYS ILE ASP ARG LEU SEQRES 39 A 559 ASN VAL TYR THR THR ALA ALA HIS PHE ALA GLU TYR ALA SEQRES 40 A 559 GLY GLU GLU ALA ALA GLU SER TRP LYS GLU ILE VAL ASN SEQRES 41 A 559 LEU LEU TYR GLU LEU LEU ALA SER LEU ILE ARG GLY ASN SEQRES 42 A 559 ARG ALA ASN CYS ALA LEU PHE SER THR ASN LEU ASP TRP SEQRES 43 A 559 VAL VAL SER LYS LEU ASP ARG LEU GLU ALA SER SER GLY FORMUL 2 HOH *121(H2 O) HELIX 1 1 LEU A 62 CYS A 65 5 4 HELIX 2 2 SER A 74 ALA A 83 1 10 HELIX 3 3 GLY A 250 HIS A 255 5 6 HELIX 4 4 HIS A 255 SER A 258 5 4 HELIX 5 5 ASP A 303 ALA A 307 5 5 HELIX 6 6 HIS A 308 SER A 313 1 6 HELIX 7 7 GLN A 394 PHE A 421 1 28 HELIX 8 8 PRO A 437 PHE A 452 1 16 HELIX 9 9 SER A 466 GLU A 481 1 16 HELIX 10 10 GLY A 482 ASN A 495 1 14 HELIX 11 11 GLU A 510 GLU A 513 5 4 HELIX 12 12 SER A 514 ARG A 531 1 18 SHEET 1 AA 9 GLU A 19 THR A 27 0 SHEET 2 AA 9 TRP A 200 CYS A 206 -1 O ASN A 201 N GLN A 23 SHEET 3 AA 9 ASP A 168 SER A 173 -1 O LEU A 169 N TRP A 200 SHEET 4 AA 9 TRP A 147 PRO A 152 -1 O THR A 149 N VAL A 172 SHEET 5 AA 9 ALA A 106 HIS A 111 -1 O ILE A 107 N TRP A 148 SHEET 6 AA 9 PHE A 67 LEU A 73 -1 O THR A 68 N ARG A 110 SHEET 7 AA 9 GLU A 19 THR A 27 -1 O GLU A 19 N ILE A 205 SHEET 1 AB 4 TYR A 117 CYS A 120 0 SHEET 2 AB 4 PHE A 133 GLN A 138 -1 O GLY A 136 N SER A 119 SHEET 3 AB 4 GLN A 190 SER A 194 -1 O VAL A 191 N VAL A 135 SHEET 4 AB 4 TYR A 179 SER A 183 -1 O TYR A 179 N SER A 194 SHEET 1 AC 4 LEU A 280 HIS A 284 0 SHEET 2 AC 4 TRP A 260 PRO A 264 -1 O ARG A 261 N ARG A 283 SHEET 3 AC 4 VAL A 219 PHE A 223 -1 O LEU A 220 N TRP A 260 SHEET 4 AC 4 PHE A 389 ARG A 392 -1 O PHE A 389 N PHE A 223 SHEET 1 AD 4 CYS A 230 ILE A 233 0 SHEET 2 AD 4 VAL A 245 GLU A 248 -1 O TYR A 246 N THR A 232 SHEET 3 AD 4 LYS A 373 HIS A 379 -1 O LYS A 374 N TYR A 247 SHEET 4 AD 4 TRP A 356 TYR A 359 -1 O TRP A 356 N HIS A 379 SHEET 1 AE 2 TYR A 290 THR A 294 0 SHEET 2 AE 2 GLY A 298 VAL A 302 -1 O GLY A 298 N THR A 294 SHEET 1 AF 2 PHE A 314 ARG A 317 0 SHEET 2 AF 2 PHE A 347 HIS A 350 -1 O PHE A 347 N ARG A 317 CRYST1 170.800 170.800 301.200 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005855 0.003380 0.000000 0.00000 SCALE2 0.000000 0.006761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003320 0.00000