PDB Short entry for 2XRW HEADER TRANSCRIPTION 23-SEP-10 2XRW TITLE LINEAR BINDING MOTIFS FOR JNK AND FOR CALCINEURIN ANTAGONISTICALLY TITLE 2 CONTROL THE NUCLEAR SHUTTLING OF NFAT4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-364; COMPND 5 SYNONYM: JNK1, MITOGEN-ACTIVATED PROTEIN KINASE 8 ISOFORM JNK1 BETA2, COMPND 6 MITOGEN-ACTIVATED PROTEIN KINASE 8\,ISOFORM CRA_D, CDNA FLJ77387\, COMPND 7 HIGHLY SIMILAR TO HOMO SAPIENS MITOGEN-ACTIVATED PROTEIN KINASE 8 COMPND 8 (MAPK8)\,TRANSCRIPT VARIANT 4\,MRNA; COMPND 9 EC: 2.7.11.24; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: LAST 20 RESIDUES TRUNCATED; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: NUCLEAR FACTOR OF ACTIVATED T-CELLS\, CYTOPLASMIC 3; COMPND 14 CHAIN: B; COMPND 15 FRAGMENT: FRAGMENT OF NFAT4, RESIDUES 141-154; COMPND 16 SYNONYM: PEPNFAT4, NF-ATC3, NFATC3, T-CELL TRANSCRIPTION FACTOR COMPND 17 NFAT4, NF-AT4, NFATX; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET DERIVATIVE; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, MAPK SIGNALING PATHWAYS, LINEAR BINDING MOTIF EXPDTA X-RAY DIFFRACTION AUTHOR T.BARKAI,I.TOEOROE,A.GARAI,A.REMENYI REVDAT 3 20-DEC-23 2XRW 1 REMARK REVDAT 2 24-OCT-12 2XRW 1 JRNL REVDAT 1 28-SEP-11 2XRW 0 JRNL AUTH A.GARAI,A.ZEKE,G.GOGL,I.TORO,F.FORDOS,H.BLANKENBURG, JRNL AUTH 2 T.BARKAI,J.VARGA,A.ALEXA,D.EMIG,M.ALBRECHT,A.REMENYI JRNL TITL SPECIFICITY OF LINEAR MOTIFS THAT BIND TO A COMMON JRNL TITL 2 MITOGEN-ACTIVATED PROTEIN KINASE DOCKING GROOVE. JRNL REF SCI. SIGNAL V. 5 74 2012 JRNL REFN ESSN 1937-9145 JRNL PMID 23047924 JRNL DOI 10.1126/SCISIGNAL.2003004 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 86986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6938 - 3.2035 0.94 5860 132 0.1597 0.1811 REMARK 3 2 3.2035 - 2.5434 1.00 6111 148 0.1589 0.1741 REMARK 3 3 2.5434 - 2.2221 1.00 6133 144 0.1474 0.1770 REMARK 3 4 2.2221 - 2.0191 1.00 6106 140 0.1515 0.1622 REMARK 3 5 2.0191 - 1.8744 1.00 6114 149 0.1528 0.1906 REMARK 3 6 1.8744 - 1.7639 1.00 6067 136 0.1581 0.1897 REMARK 3 7 1.7639 - 1.6756 1.00 6116 144 0.1619 0.1751 REMARK 3 8 1.6756 - 1.6027 1.00 6064 148 0.1723 0.2138 REMARK 3 9 1.6027 - 1.5410 1.00 6061 146 0.1821 0.1928 REMARK 3 10 1.5410 - 1.4878 1.00 6095 136 0.1952 0.2231 REMARK 3 11 1.4878 - 1.4413 1.00 6098 146 0.2076 0.2017 REMARK 3 12 1.4413 - 1.4001 1.00 6091 139 0.2305 0.2565 REMARK 3 13 1.4001 - 1.3632 1.00 6095 141 0.2544 0.2415 REMARK 3 14 1.3632 - 1.3300 0.99 5978 148 0.2906 0.3429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.65 REMARK 3 K_SOL : 0.46 REMARK 3 B_SOL : 60.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.38210 REMARK 3 B22 (A**2) : -4.83650 REMARK 3 B33 (A**2) : 2.72310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.30770 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3071 REMARK 3 ANGLE : 1.357 4166 REMARK 3 CHIRALITY : 0.075 455 REMARK 3 PLANARITY : 0.008 530 REMARK 3 DIHEDRAL : 17.343 1211 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:6) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3710 30.5320 23.5885 REMARK 3 T TENSOR REMARK 3 T11: 0.3898 T22: 0.3999 REMARK 3 T33: 0.4950 T12: -0.0754 REMARK 3 T13: 0.0171 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 0.6582 L22: 0.6931 REMARK 3 L33: 1.5945 L12: -0.4776 REMARK 3 L13: -0.2463 L23: -0.5242 REMARK 3 S TENSOR REMARK 3 S11: 0.3077 S12: -0.1884 S13: 0.1452 REMARK 3 S21: 0.0122 S22: 0.1050 S23: 0.2007 REMARK 3 S31: 0.1613 S32: 0.2793 S33: -0.3855 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 7:38) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7638 14.5026 28.0762 REMARK 3 T TENSOR REMARK 3 T11: 0.2236 T22: 0.3220 REMARK 3 T33: 0.2118 T12: -0.0314 REMARK 3 T13: -0.0240 T23: -0.1040 REMARK 3 L TENSOR REMARK 3 L11: 0.6095 L22: 1.1932 REMARK 3 L33: 1.0401 L12: -0.3120 REMARK 3 L13: 0.1615 L23: -0.2673 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: -0.3456 S13: 0.1365 REMARK 3 S21: 0.0693 S22: -0.1043 S23: -0.1052 REMARK 3 S31: 0.0911 S32: -0.0124 S33: -0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 39:68) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7267 14.8255 19.6056 REMARK 3 T TENSOR REMARK 3 T11: 0.1520 T22: 0.2580 REMARK 3 T33: 0.2253 T12: -0.0021 REMARK 3 T13: -0.0127 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 0.5002 L22: 0.4082 REMARK 3 L33: 0.2418 L12: 0.3037 REMARK 3 L13: 0.2463 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.1316 S13: 0.0039 REMARK 3 S21: 0.0437 S22: -0.1457 S23: 0.1057 REMARK 3 S31: 0.0166 S32: -0.1933 S33: 0.1048 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 69:85) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3493 17.8214 10.1233 REMARK 3 T TENSOR REMARK 3 T11: 0.1554 T22: 0.2307 REMARK 3 T33: 0.3227 T12: 0.0172 REMARK 3 T13: -0.0023 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.4246 L22: 0.2391 REMARK 3 L33: 0.2664 L12: 0.3153 REMARK 3 L13: 0.2196 L23: 0.1025 REMARK 3 S TENSOR REMARK 3 S11: 0.1629 S12: -0.0707 S13: 0.3605 REMARK 3 S21: 0.0856 S22: -0.0693 S23: -0.2253 REMARK 3 S31: -0.0113 S32: 0.2492 S33: -0.0826 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 86:123) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6559 12.4802 19.8753 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.1683 REMARK 3 T33: 0.1632 T12: 0.0019 REMARK 3 T13: -0.0170 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 0.6988 L22: 0.3625 REMARK 3 L33: 0.4123 L12: 0.1085 REMARK 3 L13: -0.0076 L23: 0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.2488 S13: 0.1468 REMARK 3 S21: -0.0609 S22: -0.0095 S23: -0.0181 REMARK 3 S31: 0.0110 S32: 0.0464 S33: 0.0244 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 124:226) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4890 2.6362 8.4693 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.1427 REMARK 3 T33: 0.1364 T12: 0.0038 REMARK 3 T13: -0.0025 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.7991 L22: 1.1272 REMARK 3 L33: 1.2138 L12: -0.4456 REMARK 3 L13: -0.1799 L23: 0.8932 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: -0.0742 S13: 0.0906 REMARK 3 S21: -0.0465 S22: 0.0314 S23: -0.0671 REMARK 3 S31: 0.0471 S32: 0.0657 S33: -0.1081 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 227:246) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5913 -12.8802 -1.1362 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.2195 REMARK 3 T33: 0.2053 T12: 0.0549 REMARK 3 T13: 0.0139 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 3.3932 L22: 2.3729 REMARK 3 L33: 2.8551 L12: -0.8211 REMARK 3 L13: 0.3930 L23: -0.8621 REMARK 3 S TENSOR REMARK 3 S11: -0.1848 S12: 0.1537 S13: -0.0210 REMARK 3 S21: -0.1821 S22: 0.1413 S23: -0.2497 REMARK 3 S31: 0.4695 S32: 0.4285 S33: -0.0108 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 247:258) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1767 -7.3693 -13.6505 REMARK 3 T TENSOR REMARK 3 T11: 0.3748 T22: 0.2963 REMARK 3 T33: 0.2055 T12: 0.0317 REMARK 3 T13: 0.0970 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.4203 L22: 1.3263 REMARK 3 L33: 1.6232 L12: 0.3597 REMARK 3 L13: -1.6180 L23: 0.5131 REMARK 3 S TENSOR REMARK 3 S11: -0.3083 S12: 0.6052 S13: -0.3469 REMARK 3 S21: -0.4385 S22: 0.0633 S23: -0.1507 REMARK 3 S31: 0.4019 S32: -0.3411 S33: 0.1951 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 259:272) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9197 -16.7160 -4.7098 REMARK 3 T TENSOR REMARK 3 T11: 0.3334 T22: 0.1783 REMARK 3 T33: 0.4488 T12: -0.0096 REMARK 3 T13: 0.1523 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.2150 L22: 0.0446 REMARK 3 L33: 0.0885 L12: -0.0391 REMARK 3 L13: -0.0643 L23: -0.0087 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: 0.0238 S13: -0.4494 REMARK 3 S21: -0.4239 S22: -0.0873 S23: -0.4519 REMARK 3 S31: 0.1583 S32: 0.0698 S33: 0.1786 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 273:293) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8930 -10.9127 12.0761 REMARK 3 T TENSOR REMARK 3 T11: 0.2158 T22: 0.3265 REMARK 3 T33: 0.2605 T12: -0.0293 REMARK 3 T13: 0.0520 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 0.8739 L22: 2.5924 REMARK 3 L33: 1.6801 L12: 1.3443 REMARK 3 L13: 0.1830 L23: -0.6375 REMARK 3 S TENSOR REMARK 3 S11: -0.1626 S12: -0.3118 S13: -0.1338 REMARK 3 S21: 0.0232 S22: 0.1599 S23: 0.4370 REMARK 3 S31: 0.1912 S32: -0.4716 S33: -0.0236 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 294:341) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9785 7.0985 3.1688 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.1496 REMARK 3 T33: 0.1535 T12: 0.0178 REMARK 3 T13: -0.0028 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.2193 L22: 0.4141 REMARK 3 L33: 0.4815 L12: -0.2219 REMARK 3 L13: -0.2657 L23: -0.2383 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: 0.0953 S13: 0.1268 REMARK 3 S21: -0.1755 S22: -0.1232 S23: 0.0391 REMARK 3 S31: -0.0266 S32: -0.0700 S33: 0.0090 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 342:365) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9100 22.4977 6.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.2139 REMARK 3 T33: 0.2439 T12: 0.0590 REMARK 3 T13: -0.0122 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.8615 L22: 0.2623 REMARK 3 L33: 0.9413 L12: -0.1893 REMARK 3 L13: -0.1612 L23: -0.3376 REMARK 3 S TENSOR REMARK 3 S11: 0.2332 S12: 0.0929 S13: 0.4243 REMARK 3 S21: -0.1715 S22: -0.0740 S23: -0.0779 REMARK 3 S31: -0.4246 S32: -0.1625 S33: -0.0808 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 143:154) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3745 4.2566 25.4101 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.2541 REMARK 3 T33: 0.1994 T12: -0.0288 REMARK 3 T13: 0.0307 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.9711 L22: 0.8030 REMARK 3 L33: 0.5865 L12: 0.7260 REMARK 3 L13: -0.1534 L23: 0.5044 REMARK 3 S TENSOR REMARK 3 S11: 0.1600 S12: -0.2919 S13: 0.3763 REMARK 3 S21: 0.1814 S22: -0.1450 S23: 0.0627 REMARK 3 S31: 0.1535 S32: -0.1782 S33: -0.0411 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 0, 173-188, 366-370 IN CHAIN REMARK 3 A, RESIDUES 141-142 IN CHAIN B ARE COMPLETELY DISORDERED. THE REMARK 3 AMPPNP RESIDUE IS PARTIALLY DISORDERED. REMARK 4 REMARK 4 2XRW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1290045412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 47.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UKH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 8000, 100 MM SODIUM CITRATE REMARK 280 PH 5.5, 20% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.06500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 173 REMARK 465 ARG A 174 REMARK 465 THR A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 177 REMARK 465 THR A 178 REMARK 465 SER A 179 REMARK 465 PHE A 180 REMARK 465 MET A 181 REMARK 465 MET A 182 REMARK 465 THR A 183 REMARK 465 PRO A 184 REMARK 465 TYR A 185 REMARK 465 VAL A 186 REMARK 465 VAL A 187 REMARK 465 THR A 188 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 LEU B 141 REMARK 465 GLU B 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 109 CD OE1 OE2 REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 143 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 363 O HOH A 2396 1.90 REMARK 500 O HOH A 2369 O HOH A 2370 1.91 REMARK 500 N ARG A 189 O HOH A 2230 1.92 REMARK 500 O HOH A 2025 O HOH A 2050 1.95 REMARK 500 O HOH A 2078 O HOH A 2091 1.96 REMARK 500 O HOH A 2003 O HOH A 2014 1.98 REMARK 500 O HOH A 2090 O HOH B 2010 1.99 REMARK 500 O HOH A 2107 O HOH A 2245 2.01 REMARK 500 O HOH A 2187 O HOH A 2383 2.02 REMARK 500 O HOH A 2133 O HOH A 2288 2.03 REMARK 500 O HOH B 2003 O HOH B 2004 2.03 REMARK 500 O HOH A 2107 O HOH A 2108 2.03 REMARK 500 O HOH A 2328 O HOH A 2338 2.07 REMARK 500 OD1 ASP A 362 O HOH A 2393 2.09 REMARK 500 OE1 GLN A 240 O HOH A 2270 2.09 REMARK 500 O HOH A 2341 O HOH A 2350 2.10 REMARK 500 O GLN A 37 O HOH A 2068 2.13 REMARK 500 O HOH A 2078 O HOH A 2195 2.15 REMARK 500 O HOH A 2078 O HOH A 2217 2.15 REMARK 500 O HOH A 2271 O HOH A 2304 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2131 O HOH A 2190 1554 2.05 REMARK 500 O HOH A 2310 O HOH A 2375 2545 2.06 REMARK 500 O HOH A 2298 O HOH A 2359 2545 2.07 REMARK 500 O HOH A 2297 O HOH A 2408 2545 2.11 REMARK 500 O HOH A 2187 O HOH A 2365 1655 2.13 REMARK 500 O HOH A 2303 O HOH A 2369 2545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 102 -35.20 -134.68 REMARK 500 ARG A 150 -14.29 77.36 REMARK 500 ALA A 282 29.45 -145.90 REMARK 500 LYS A 340 -29.70 78.42 REMARK 500 LEU A 342 56.07 -97.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2007 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A2010 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2016 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A2062 DISTANCE = 5.99 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 AMPPNP (ANP): THE GAMMA-PHOSPHATE GROUP IS NOT MODELLED. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP A 1367 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1369 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XS0 RELATED DB: PDB REMARK 900 LINEAR BINDING MOTIFS FOR JNK AND FOR CALCINEURIN ANTAGONISTICALLY REMARK 900 CONTROL THE NUCLEAR SHUTTLING OF NFAT4 DBREF 2XRW A 2 364 UNP A1L4K2 A1L4K2_HUMAN 2 364 DBREF 2XRW B 141 154 UNP Q12968 NFAC3_HUMAN 141 154 SEQADV 2XRW MET A 0 UNP A1L4K2 EXPRESSION TAG SEQADV 2XRW GLY A 1 UNP A1L4K2 EXPRESSION TAG SEQADV 2XRW HIS A 365 UNP A1L4K2 EXPRESSION TAG SEQADV 2XRW HIS A 366 UNP A1L4K2 EXPRESSION TAG SEQADV 2XRW HIS A 367 UNP A1L4K2 EXPRESSION TAG SEQADV 2XRW HIS A 368 UNP A1L4K2 EXPRESSION TAG SEQADV 2XRW HIS A 369 UNP A1L4K2 EXPRESSION TAG SEQADV 2XRW HIS A 370 UNP A1L4K2 EXPRESSION TAG SEQRES 1 A 371 MET GLY SER ARG SER LYS ARG ASP ASN ASN PHE TYR SER SEQRES 2 A 371 VAL GLU ILE GLY ASP SER THR PHE THR VAL LEU LYS ARG SEQRES 3 A 371 TYR GLN ASN LEU LYS PRO ILE GLY SER GLY ALA GLN GLY SEQRES 4 A 371 ILE VAL CYS ALA ALA TYR ASP ALA ILE LEU GLU ARG ASN SEQRES 5 A 371 VAL ALA ILE LYS LYS LEU SER ARG PRO PHE GLN ASN GLN SEQRES 6 A 371 THR HIS ALA LYS ARG ALA TYR ARG GLU LEU VAL LEU MET SEQRES 7 A 371 LYS CYS VAL ASN HIS LYS ASN ILE ILE GLY LEU LEU ASN SEQRES 8 A 371 VAL PHE THR PRO GLN LYS SER LEU GLU GLU PHE GLN ASP SEQRES 9 A 371 VAL TYR ILE VAL MET GLU LEU MET ASP ALA ASN LEU CYS SEQRES 10 A 371 GLN VAL ILE GLN MET GLU LEU ASP HIS GLU ARG MET SER SEQRES 11 A 371 TYR LEU LEU TYR GLN MET LEU CYS GLY ILE LYS HIS LEU SEQRES 12 A 371 HIS SER ALA GLY ILE ILE HIS ARG ASP LEU LYS PRO SER SEQRES 13 A 371 ASN ILE VAL VAL LYS SER ASP CYS THR LEU LYS ILE LEU SEQRES 14 A 371 ASP PHE GLY LEU ALA ARG THR ALA GLY THR SER PHE MET SEQRES 15 A 371 MET THR PRO TYR VAL VAL THR ARG TYR TYR ARG ALA PRO SEQRES 16 A 371 GLU VAL ILE LEU GLY MET GLY TYR LYS GLU ASN VAL ASP SEQRES 17 A 371 ILE TRP SER VAL GLY CYS ILE MET GLY GLU MET ILE LYS SEQRES 18 A 371 GLY GLY VAL LEU PHE PRO GLY THR ASP HIS ILE ASP GLN SEQRES 19 A 371 TRP ASN LYS VAL ILE GLU GLN LEU GLY THR PRO CYS PRO SEQRES 20 A 371 GLU PHE MET LYS LYS LEU GLN PRO THR VAL ARG THR TYR SEQRES 21 A 371 VAL GLU ASN ARG PRO LYS TYR ALA GLY TYR SER PHE GLU SEQRES 22 A 371 LYS LEU PHE PRO ASP VAL LEU PHE PRO ALA ASP SER GLU SEQRES 23 A 371 HIS ASN LYS LEU LYS ALA SER GLN ALA ARG ASP LEU LEU SEQRES 24 A 371 SER LYS MET LEU VAL ILE ASP ALA SER LYS ARG ILE SER SEQRES 25 A 371 VAL ASP GLU ALA LEU GLN HIS PRO TYR ILE ASN VAL TRP SEQRES 26 A 371 TYR ASP PRO SER GLU ALA GLU ALA PRO PRO PRO LYS ILE SEQRES 27 A 371 PRO ASP LYS GLN LEU ASP GLU ARG GLU HIS THR ILE GLU SEQRES 28 A 371 GLU TRP LYS GLU LEU ILE TYR LYS GLU VAL MET ASP LEU SEQRES 29 A 371 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 14 LEU GLU ARG PRO SER ARG ASP HIS LEU TYR LEU PRO LEU SEQRES 2 B 14 GLU HET ANP A1367 27 HET GOL A1368 6 HET GOL A1369 6 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *422(H2 O) HELIX 1 1 ARG A 3 ASN A 8 5 6 HELIX 2 2 ASN A 63 VAL A 80 1 18 HELIX 3 3 LEU A 115 MET A 121 1 7 HELIX 4 4 ASP A 124 ALA A 145 1 22 HELIX 5 5 LYS A 153 SER A 155 5 3 HELIX 6 6 ALA A 193 LEU A 198 1 6 HELIX 7 7 ASN A 205 GLY A 221 1 17 HELIX 8 8 ASP A 229 GLY A 242 1 14 HELIX 9 9 CYS A 245 LYS A 250 1 6 HELIX 10 10 GLN A 253 ASN A 262 1 10 HELIX 11 11 SER A 270 PHE A 275 1 6 HELIX 12 12 PRO A 276 PHE A 280 5 5 HELIX 13 13 SER A 284 LEU A 302 1 19 HELIX 14 14 ASP A 305 ARG A 309 5 5 HELIX 15 15 SER A 311 HIS A 318 1 8 HELIX 16 16 HIS A 318 VAL A 323 1 6 HELIX 17 17 ASP A 326 GLU A 331 1 6 HELIX 18 18 THR A 348 GLU A 364 1 17 HELIX 19 19 SER B 145 LEU B 149 5 5 SHEET 1 AA 2 PHE A 10 ILE A 15 0 SHEET 2 AA 2 SER A 18 LEU A 23 -1 O SER A 18 N ILE A 15 SHEET 1 AB 5 TYR A 26 SER A 34 0 SHEET 2 AB 5 GLY A 38 ASP A 45 -1 O VAL A 40 N ILE A 32 SHEET 3 AB 5 ARG A 50 SER A 58 -1 O ARG A 50 N ASP A 45 SHEET 4 AB 5 ASP A 103 GLU A 109 -1 O VAL A 104 N LEU A 57 SHEET 5 AB 5 LEU A 88 PHE A 92 -1 N LEU A 89 O VAL A 107 SHEET 1 AC 3 ALA A 113 ASN A 114 0 SHEET 2 AC 3 ILE A 157 VAL A 159 -1 N VAL A 159 O ALA A 113 SHEET 3 AC 3 LEU A 165 ILE A 167 -1 O LYS A 166 N VAL A 158 SITE 1 AC1 23 ILE A 32 GLY A 33 SER A 34 GLY A 35 SITE 2 AC1 23 GLY A 38 VAL A 40 ALA A 53 LYS A 55 SITE 3 AC1 23 MET A 108 GLU A 109 MET A 111 ASN A 114 SITE 4 AC1 23 SER A 155 ASN A 156 LEU A 168 ASP A 169 SITE 5 AC1 23 HOH A2063 HOH A2402 HOH A2403 HOH A2404 SITE 6 AC1 23 HOH A2405 HOH A2406 HOH A2407 SITE 1 AC2 6 GLU A 239 TYR A 266 ALA A 267 GLY A 268 SITE 2 AC2 6 TYR A 269 HOH A2304 SITE 1 AC3 6 VAL A 80 ASN A 81 HIS A 141 PRO A 333 SITE 2 AC3 6 PRO A 335 HOH A2408 CRYST1 46.230 94.130 47.840 90.00 110.74 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021631 0.000000 0.008191 0.00000 SCALE2 0.000000 0.010624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022351 0.00000