PDB Short entry for 2XSD HEADER TRANSCRIPTION/DNA 28-SEP-10 2XSD TITLE CRYSTAL STRUCTURE OF THE DIMERIC OCT-6 (POU3F1) POU DOMAIN BOUND TO TITLE 2 PALINDROMIC MORE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3'; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 1; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: RESIDUES 240-402; COMPND 13 SYNONYM: OCTAMER-BINDING TRANSCRIPTION FACTOR 6, OCTAMER-BINDING COMPND 14 PROTEIN 6, POU DOMAIN TRANSCRIPTION FACTOR SCIP, OTF-6, OCT-6; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PDEST-HISMBP KEYWDS TRANSCRIPTION-DNA COMPLEX, SOX EXPDTA X-RAY DIFFRACTION AUTHOR R.JAUCH,S.H.CHOO,C.K.L.NG,P.R.KOLATKAR REVDAT 4 20-DEC-23 2XSD 1 REMARK REVDAT 3 11-MAY-11 2XSD 1 JRNL REVDAT 2 08-DEC-10 2XSD 1 JRNL REVDAT 1 20-OCT-10 2XSD 0 JRNL AUTH R.JAUCH,S.H.CHOO,C.K.L.NG,P.R.KOLATKAR JRNL TITL CRYSTAL STRUCTURE OF THE DIMERIC OCT6 (POU3F1) POU DOMAIN JRNL TITL 2 BOUND TO PALINDROMIC MORE DNA. JRNL REF PROTEINS V. 79 674 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21117060 JRNL DOI 10.1002/PROT.22916 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 15949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3979 - 4.5552 0.99 1364 155 0.1643 0.1859 REMARK 3 2 4.5552 - 3.6163 0.98 1329 147 0.1646 0.2138 REMARK 3 3 3.6163 - 3.1593 0.96 1277 141 0.1942 0.2209 REMARK 3 4 3.1593 - 2.8705 1.00 1345 151 0.2187 0.3097 REMARK 3 5 2.8705 - 2.6648 1.00 1332 144 0.2104 0.2264 REMARK 3 6 2.6648 - 2.5077 1.00 1318 153 0.2086 0.2590 REMARK 3 7 2.5077 - 2.3822 1.00 1336 143 0.2300 0.2788 REMARK 3 8 2.3822 - 2.2785 1.00 1332 158 0.2185 0.2719 REMARK 3 9 2.2785 - 2.1908 1.00 1320 135 0.2286 0.2727 REMARK 3 10 2.1908 - 2.1152 0.96 1289 134 0.2451 0.2699 REMARK 3 11 2.1152 - 2.0490 0.85 1108 138 0.2696 0.2924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 54.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70210 REMARK 3 B22 (A**2) : 5.63410 REMARK 3 B33 (A**2) : -4.93210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 8.07450 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1537 REMARK 3 ANGLE : 1.153 2148 REMARK 3 CHIRALITY : 0.057 239 REMARK 3 PLANARITY : 0.004 199 REMARK 3 DIHEDRAL : 21.582 606 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN C AND RESID 247:269) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5520 846.7952 38.2165 REMARK 3 T TENSOR REMARK 3 T11: 0.5997 T22: 0.5720 REMARK 3 T33: 0.3564 T12: 0.1115 REMARK 3 T13: -0.0939 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 4.8088 L22: 1.7959 REMARK 3 L33: 0.1806 L12: -1.4276 REMARK 3 L13: -0.7499 L23: 0.1441 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: -1.2790 S13: -0.0708 REMARK 3 S21: 0.7314 S22: 0.2267 S23: 0.0953 REMARK 3 S31: 0.2249 S32: 0.5224 S33: -0.2452 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN C AND RESID 270:296) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9087 854.9192 29.5247 REMARK 3 T TENSOR REMARK 3 T11: 0.3738 T22: 0.3752 REMARK 3 T33: 0.4646 T12: -0.0112 REMARK 3 T13: 0.0155 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.8828 L22: 0.1655 REMARK 3 L33: 1.0046 L12: 0.3605 REMARK 3 L13: 0.5584 L23: 0.1076 REMARK 3 S TENSOR REMARK 3 S11: 0.1365 S12: -0.1973 S13: 0.0959 REMARK 3 S21: 0.1326 S22: -0.1934 S23: -0.1058 REMARK 3 S31: -0.0954 S32: -0.0666 S33: 0.0191 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 297:319) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6780 851.2381 31.5557 REMARK 3 T TENSOR REMARK 3 T11: 0.3382 T22: 0.3453 REMARK 3 T33: 0.5510 T12: 0.0011 REMARK 3 T13: -0.1134 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 0.1904 L22: 0.1995 REMARK 3 L33: 2.3901 L12: 0.1074 REMARK 3 L13: -0.1231 L23: -0.6044 REMARK 3 S TENSOR REMARK 3 S11: -0.0858 S12: 0.0379 S13: 0.1246 REMARK 3 S21: 0.0656 S22: 0.0380 S23: -0.5674 REMARK 3 S31: 0.3187 S32: 0.3448 S33: -0.0070 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN C AND RESID 343:375) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7938 831.1885 7.4362 REMARK 3 T TENSOR REMARK 3 T11: 1.5153 T22: 0.8037 REMARK 3 T33: 0.7742 T12: -0.2198 REMARK 3 T13: -0.0258 T23: -0.2321 REMARK 3 L TENSOR REMARK 3 L11: 6.6646 L22: 1.9528 REMARK 3 L33: 3.7820 L12: 0.1063 REMARK 3 L13: 1.6122 L23: -1.1005 REMARK 3 S TENSOR REMARK 3 S11: 0.5054 S12: 1.4054 S13: -0.9477 REMARK 3 S21: -0.6820 S22: -0.1727 S23: 0.0733 REMARK 3 S31: 2.6305 S32: -0.1654 S33: -0.0355 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 376:387) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8282 839.0312 7.4425 REMARK 3 T TENSOR REMARK 3 T11: 0.9559 T22: 0.7796 REMARK 3 T33: 0.4879 T12: -0.0776 REMARK 3 T13: 0.0256 T23: -0.0912 REMARK 3 L TENSOR REMARK 3 L11: 8.2923 L22: 1.9143 REMARK 3 L33: 0.0455 L12: -0.9409 REMARK 3 L13: -0.2339 L23: -0.2394 REMARK 3 S TENSOR REMARK 3 S11: 0.3935 S12: 1.6933 S13: 0.2525 REMARK 3 S21: -1.1756 S22: -0.1261 S23: -0.3613 REMARK 3 S31: 1.1584 S32: 0.2374 S33: -0.2419 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 388:397) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1938 837.0064 20.0448 REMARK 3 T TENSOR REMARK 3 T11: 0.6779 T22: 0.5638 REMARK 3 T33: 0.4930 T12: 0.0521 REMARK 3 T13: 0.0885 T23: -0.1469 REMARK 3 L TENSOR REMARK 3 L11: 5.7902 L22: 6.9746 REMARK 3 L33: 7.0428 L12: 3.8949 REMARK 3 L13: 6.0263 L23: 5.8898 REMARK 3 S TENSOR REMARK 3 S11: 0.5475 S12: -0.8835 S13: 0.1709 REMARK 3 S21: 0.6126 S22: -1.3153 S23: -0.5177 REMARK 3 S31: 1.1006 S32: -0.7968 S33: 0.3208 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A OR CHAIN B) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9642 847.5584 13.8428 REMARK 3 T TENSOR REMARK 3 T11: 0.4788 T22: 0.6443 REMARK 3 T33: 0.4182 T12: 0.0376 REMARK 3 T13: 0.1238 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.7212 L22: 1.0964 REMARK 3 L33: 1.6271 L12: 0.1495 REMARK 3 L13: 0.8426 L23: -0.3255 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: 1.1136 S13: 0.3153 REMARK 3 S21: -0.4195 S22: 0.0554 S23: -0.2289 REMARK 3 S31: 0.4492 S32: 0.1341 S33: -0.0613 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1290045556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1E3O REMARK 200 REMARK 200 REMARK: POLYALA MODEL WITH TERMINAL NT REMOVED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.2M MGCL2, 14%PEG4000 AND REMARK 280 0.1 SODIUM CITRATE PH5.6 PROTEIN-DNA COMPLEX: 10MG/ML IN 10 MM REMARK 280 HEPES PH 7.0; 100 MM NACL EUQAL RESERVOIR AND PROTEIN VOLUMES REMARK 280 MIXED REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.74850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.00450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.74850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.00450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2001 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2013 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 239 REMARK 465 GLY C 240 REMARK 465 GLU C 241 REMARK 465 HIS C 242 REMARK 465 SER C 243 REMARK 465 ASP C 244 REMARK 465 GLU C 245 REMARK 465 ASP C 246 REMARK 465 SER C 320 REMARK 465 SER C 321 REMARK 465 SER C 322 REMARK 465 GLY C 323 REMARK 465 SER C 324 REMARK 465 PRO C 325 REMARK 465 THR C 326 REMARK 465 ASN C 327 REMARK 465 LEU C 328 REMARK 465 ASP C 329 REMARK 465 LYS C 330 REMARK 465 ILE C 331 REMARK 465 ALA C 332 REMARK 465 ALA C 333 REMARK 465 GLN C 334 REMARK 465 GLY C 335 REMARK 465 ARG C 336 REMARK 465 LYS C 337 REMARK 465 ARG C 338 REMARK 465 LYS C 339 REMARK 465 LYS C 340 REMARK 465 ARG C 341 REMARK 465 THR C 342 REMARK 465 ALA C 398 REMARK 465 ALA C 399 REMARK 465 GLY C 400 REMARK 465 ALA C 401 REMARK 465 GLY C 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA A 201 O5' REMARK 470 DA B 212 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA B 212 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 212 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 201 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG A 207 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DC B 209 O4' - C1' - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN C 298 43.60 -95.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1401 DBREF 2XSD A 201 211 PDB 2XSD 2XSD 201 211 DBREF 2XSD B 202 212 PDB 2XSD 2XSD 202 212 DBREF 2XSD C 240 402 UNP P21952 PO3F1_MOUSE 240 402 SEQADV 2XSD GLY C 239 UNP P21952 EXPRESSION TAG SEQRES 1 A 11 DA DT DG DC DA DT DG DA DG DG DA SEQRES 1 B 11 DC DC DT DC DA DT DG DC DA DT DA SEQRES 1 C 164 GLY GLY GLU HIS SER ASP GLU ASP ALA PRO SER SER ASP SEQRES 2 C 164 ASP LEU GLU GLN PHE ALA LYS GLN PHE LYS GLN ARG ARG SEQRES 3 C 164 ILE LYS LEU GLY PHE THR GLN ALA ASP VAL GLY LEU ALA SEQRES 4 C 164 LEU GLY THR LEU TYR GLY ASN VAL PHE SER GLN THR THR SEQRES 5 C 164 ILE CYS ARG PHE GLU ALA LEU GLN LEU SER PHE LYS ASN SEQRES 6 C 164 MET CYS LYS LEU LYS PRO LEU LEU ASN LYS TRP LEU GLU SEQRES 7 C 164 GLU THR ASP SER SER SER GLY SER PRO THR ASN LEU ASP SEQRES 8 C 164 LYS ILE ALA ALA GLN GLY ARG LYS ARG LYS LYS ARG THR SEQRES 9 C 164 SER ILE GLU VAL GLY VAL LYS GLY ALA LEU GLU SER HIS SEQRES 10 C 164 PHE LEU LYS CYS PRO LYS PRO SER ALA HIS GLU ILE THR SEQRES 11 C 164 GLY LEU ALA ASP SER LEU GLN LEU GLU LYS GLU VAL VAL SEQRES 12 C 164 ARG VAL TRP PHE CYS ASN ARG ARG GLN LYS GLU LYS ARG SEQRES 13 C 164 MET THR PRO ALA ALA GLY ALA GLY HET EDO C1398 4 HET EDO C1399 4 HET EDO C1400 4 HET EDO C1401 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 HOH *38(H2 O) HELIX 1 1 SER C 249 LEU C 267 1 19 HELIX 2 2 THR C 270 GLY C 283 1 14 HELIX 3 3 SER C 287 ALA C 296 1 10 HELIX 4 4 SER C 300 ASP C 319 1 20 HELIX 5 5 GLU C 345 CYS C 359 1 15 HELIX 6 6 SER C 363 GLN C 375 1 13 HELIX 7 7 GLU C 377 LYS C 393 1 17 SITE 1 AC1 6 LEU C 281 TYR C 282 SER C 300 PHE C 301 SITE 2 AC1 6 LYS C 302 LYS C 393 SITE 1 AC2 4 DT B 211 ARG C 264 PHE C 269 HOH C2018 SITE 1 AC3 6 DT A 206 DG A 207 DC B 205 CYS C 386 SITE 2 AC3 6 ASN C 387 GLN C 390 SITE 1 AC4 4 DA B 210 ASP C 273 HOH C2004 HOH C2018 CRYST1 93.497 52.009 69.013 90.00 129.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010696 0.000000 0.008670 0.00000 SCALE2 0.000000 0.019227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018653 0.00000