PDB Short entry for 2XST HEADER TRANSPORT PROTEIN 30-SEP-10 2XST TITLE CRYSTAL STRUCTURE OF THE HUMAN LIPOCALIN 15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOCALIN 15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIPOCALIN 15 PRECURSOR, RESIDUES 19-177; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSPORT PROTEIN, LCN15, MSFL2541 EXPDTA X-RAY DIFFRACTION AUTHOR J.R.C.MUNIZ,C.GILEADI,W.W.YUE,T.KROJER,E.UGOCHUKWU,C.PHILLIPS,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,K.L.KAVANAGH, AUTHOR 3 U.OPPERMANN REVDAT 3 24-JAN-18 2XST 1 JRNL REVDAT 2 05-DEC-12 2XST 1 SOURCE AUTHOR JRNL REMARK REVDAT 2 2 1 VERSN REVDAT 1 13-OCT-10 2XST 0 JRNL AUTH J.R.C.MUNIZ,C.GILEADI,W.W.YUE,T.KROJER,E.UGOCHUKWU, JRNL AUTH 2 C.PHILLIPS,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT, JRNL AUTH 3 C.BOUNTRA,K.L.KAVANAGH,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN LIPOCALIN 15 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 912 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2868 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2059 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2700 REMARK 3 BIN R VALUE (WORKING SET) : 0.2036 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.86 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 168 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1167 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.55940 REMARK 3 B22 (A**2) : -2.55940 REMARK 3 B33 (A**2) : 5.11890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.183 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1232 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1673 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 564 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 28 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 181 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1232 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 153 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1507 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.08 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 22 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 39.1083 11.2497 24.5411 REMARK 3 T TENSOR REMARK 3 T11: -0.0351 T22: -0.1131 REMARK 3 T33: -0.1227 T12: -0.0325 REMARK 3 T13: -0.0764 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.8581 L22: 7.6216 REMARK 3 L33: 1.7442 L12: 0.0361 REMARK 3 L13: -2.5256 L23: -3.3117 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: -0.2199 S13: -0.0499 REMARK 3 S21: 0.1887 S22: -0.0330 S23: -0.4229 REMARK 3 S31: -0.2327 S32: 0.1519 S33: 0.1017 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: A 33 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9545 7.2428 20.2866 REMARK 3 T TENSOR REMARK 3 T11: -0.0591 T22: 0.0469 REMARK 3 T33: -0.0502 T12: 0.0614 REMARK 3 T13: -0.0059 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.0376 L22: 1.7061 REMARK 3 L33: 2.9119 L12: -0.1557 REMARK 3 L13: 1.0466 L23: -1.2830 REMARK 3 S TENSOR REMARK 3 S11: -0.0990 S12: -0.0260 S13: -0.0203 REMARK 3 S21: 0.0190 S22: 0.1926 S23: 0.2926 REMARK 3 S31: -0.1608 S32: -0.5044 S33: -0.0936 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: A 64 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6605 -2.9250 20.1004 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: -0.0064 REMARK 3 T33: -0.0263 T12: 0.0253 REMARK 3 T13: 0.0019 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 5.7508 L22: 4.4233 REMARK 3 L33: 4.8892 L12: 3.5057 REMARK 3 L13: 2.0210 L23: -1.3269 REMARK 3 S TENSOR REMARK 3 S11: -0.1448 S12: 0.3877 S13: -0.2370 REMARK 3 S21: -0.1198 S22: 0.0087 S23: -0.2466 REMARK 3 S31: 0.3082 S32: 0.1831 S33: 0.1361 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: A 76 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3334 -4.9563 19.7701 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.2457 REMARK 3 T33: 0.0866 T12: -0.0953 REMARK 3 T13: -0.0647 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: -0.6974 L22: 1.4870 REMARK 3 L33: 0.5085 L12: 1.0864 REMARK 3 L13: -0.6304 L23: -1.6160 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.0188 S13: -0.1172 REMARK 3 S21: 0.0066 S22: 0.0096 S23: 0.2418 REMARK 3 S31: 0.0989 S32: -0.1695 S33: -0.0419 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: A 86 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2058 4.8744 13.9045 REMARK 3 T TENSOR REMARK 3 T11: -0.0215 T22: -0.0299 REMARK 3 T33: -0.1039 T12: -0.0359 REMARK 3 T13: -0.0107 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.9527 L22: 0.9286 REMARK 3 L33: 1.0421 L12: 0.0074 REMARK 3 L13: -0.4826 L23: -0.4489 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: 0.0585 S13: -0.1241 REMARK 3 S21: -0.0810 S22: 0.0375 S23: -0.0395 REMARK 3 S31: 0.1052 S32: -0.0179 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: A 111 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7826 10.4006 20.6330 REMARK 3 T TENSOR REMARK 3 T11: 0.0268 T22: -0.0337 REMARK 3 T33: -0.0678 T12: 0.0383 REMARK 3 T13: -0.0135 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.5263 L22: 1.0790 REMARK 3 L33: 2.8826 L12: -0.1509 REMARK 3 L13: 0.3234 L23: -1.4005 REMARK 3 S TENSOR REMARK 3 S11: -0.1394 S12: 0.1097 S13: 0.0969 REMARK 3 S21: 0.0868 S22: 0.1105 S23: 0.1316 REMARK 3 S31: -0.3787 S32: -0.1851 S33: 0.0289 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: A 146 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7319 17.7066 23.9728 REMARK 3 T TENSOR REMARK 3 T11: -0.0174 T22: -0.1134 REMARK 3 T33: -0.1301 T12: 0.1615 REMARK 3 T13: 0.0356 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.5220 L22: 3.3233 REMARK 3 L33: 6.0252 L12: -0.7811 REMARK 3 L13: 0.6623 L23: -0.5723 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: -0.2103 S13: 0.4648 REMARK 3 S21: 0.2824 S22: 0.0174 S23: 0.2523 REMARK 3 S31: -0.8273 S32: -0.4128 S33: 0.0259 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XST COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1290045614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17872 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.5, 1.4 M TRI-SODIUM REMARK 280 CITRATE DIHYDRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.10000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.20000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.15000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.25000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 MET A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 79 REMARK 465 ALA A 80 REMARK 465 ASP A 81 REMARK 465 GLY A 82 REMARK 465 CYS A 83 REMARK 465 ASP A 174 REMARK 465 ALA A 175 REMARK 465 CYS A 176 REMARK 465 ASN A 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 NZ REMARK 470 HIS A 55 ND1 CD2 CE1 NE2 REMARK 470 MET A 75 CE REMARK 470 VAL A 145 CG1 CG2 REMARK 470 LYS A 151 CE NZ REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 ASP A 165 OD1 OD2 REMARK 470 SER A 173 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 93 -105.73 -107.58 REMARK 500 TYR A 116 -30.11 66.56 REMARK 500 SER A 118 -31.20 -142.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2068 DISTANCE = 6.09 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1174 DBREF 2XST A 19 177 UNP Q6UWW0 LCN15_HUMAN 19 177 SEQADV 2XST SER A 17 UNP Q6UWW0 EXPRESSION TAG SEQADV 2XST MET A 18 UNP Q6UWW0 EXPRESSION TAG SEQRES 1 A 161 SER MET GLN ALA GLU VAL LEU LEU GLN PRO ASP PHE ASN SEQRES 2 A 161 ALA GLU LYS PHE SER GLY LEU TRP TYR VAL VAL SER MET SEQRES 3 A 161 ALA SER ASP CYS ARG VAL PHE LEU GLY LYS LYS ASP HIS SEQRES 4 A 161 LEU SER MET SER THR ARG ALA ILE ARG PRO THR GLU GLU SEQRES 5 A 161 GLY GLY LEU HIS VAL HIS MET GLU PHE PRO GLY ALA ASP SEQRES 6 A 161 GLY CYS ASN GLN VAL ASP ALA GLU TYR LEU LYS VAL GLY SEQRES 7 A 161 SER GLU GLY HIS PHE ARG VAL PRO ALA LEU GLY TYR LEU SEQRES 8 A 161 ASP VAL ARG ILE VAL ASP THR ASP TYR SER SER PHE ALA SEQRES 9 A 161 VAL LEU TYR ILE TYR LYS GLU LEU GLU GLY ALA LEU SER SEQRES 10 A 161 THR MET VAL GLN LEU TYR SER ARG THR GLN ASP VAL SER SEQRES 11 A 161 PRO GLN ALA LEU LYS SER PHE GLN ASP PHE TYR PRO THR SEQRES 12 A 161 LEU GLY LEU PRO LYS ASP MET MET VAL MET LEU PRO GLN SEQRES 13 A 161 SER ASP ALA CYS ASN HET EDO A1174 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *144(H2 O) HELIX 1 1 CYS A 46 LYS A 53 1 8 HELIX 2 2 ASP A 54 LEU A 56 5 3 HELIX 3 3 GLU A 67 GLY A 69 5 3 HELIX 4 4 PRO A 102 LEU A 104 5 3 HELIX 5 5 SER A 146 TYR A 157 1 12 HELIX 6 6 PRO A 158 GLY A 161 5 4 HELIX 7 7 PRO A 163 ASP A 165 5 3 SHEET 1 AA 9 GLY A 35 SER A 44 0 SHEET 2 AA 9 SER A 59 PRO A 65 -1 O SER A 59 N VAL A 39 SHEET 3 AA 9 LEU A 71 GLU A 76 -1 O HIS A 72 N ARG A 64 SHEET 4 AA 9 GLN A 85 LYS A 92 -1 O VAL A 86 N MET A 75 SHEET 5 AA 9 HIS A 98 VAL A 101 -1 O ARG A 100 N LEU A 91 SHEET 6 AA 9 TYR A 106 THR A 114 -1 O TYR A 106 N VAL A 101 SHEET 7 AA 9 PHE A 119 LEU A 128 -1 O VAL A 121 N VAL A 112 SHEET 8 AA 9 ALA A 131 SER A 140 -1 O ALA A 131 N LEU A 128 SHEET 9 AA 9 GLY A 35 SER A 44 0 SITE 1 AC1 6 MET A 42 SER A 57 SER A 59 ARG A 61 SITE 2 AC1 6 PHE A 77 LEU A 170 CRYST1 44.800 44.800 126.300 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022321 0.012887 0.000000 0.00000 SCALE2 0.000000 0.025775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007918 0.00000