PDB Short entry for 2XT3 HEADER MOTOR PROTEIN 04-OCT-10 2XT3 TITLE HUMAN KIF7, A KINESIN INVOLVED IN HEDGEHOG SIGNALLING COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIF7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 7-347; COMPND 5 SYNONYM: KINESIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM20MOD KEYWDS MOTOR PROTEIN, SIGNAL TRANSDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.KLEJNOT,F.KOZIELSKI REVDAT 4 20-DEC-23 2XT3 1 REMARK LINK REVDAT 3 15-FEB-12 2XT3 1 TITLE JRNL REMARK REVDAT 2 25-JAN-12 2XT3 1 JRNL REVDAT 1 14-DEC-11 2XT3 0 JRNL AUTH M.KLEJNOT,F.KOZIELSKI JRNL TITL STRUCTURAL INSIGHTS INTO HUMAN KIF7, A KINESIN INVOLVED IN JRNL TITL 2 HEDGEHOG SIGNALLING. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 154 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22281744 JRNL DOI 10.1107/S0907444911053042 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 28342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7073 - 4.0512 0.93 2712 137 0.1782 0.1949 REMARK 3 2 4.0512 - 3.2170 0.98 2738 148 0.1522 0.1951 REMARK 3 3 3.2170 - 2.8107 0.99 2738 139 0.1783 0.2529 REMARK 3 4 2.8107 - 2.5539 0.99 2733 140 0.1867 0.2500 REMARK 3 5 2.5539 - 2.3710 0.99 2713 153 0.1900 0.2297 REMARK 3 6 2.3710 - 2.2312 0.99 2696 146 0.1775 0.2519 REMARK 3 7 2.2312 - 2.1195 0.99 2704 135 0.1789 0.2237 REMARK 3 8 2.1195 - 2.0273 0.99 2659 145 0.1905 0.2665 REMARK 3 9 2.0273 - 1.9493 0.98 2630 150 0.2097 0.2708 REMARK 3 10 1.9493 - 1.8820 0.96 2579 147 0.2332 0.3125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 58.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.01430 REMARK 3 B22 (A**2) : -4.98060 REMARK 3 B33 (A**2) : 0.96620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2362 REMARK 3 ANGLE : 1.458 3213 REMARK 3 CHIRALITY : 0.110 377 REMARK 3 PLANARITY : 0.006 417 REMARK 3 DIHEDRAL : 15.117 857 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1290045656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3B6V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.42000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.42000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 226 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 268 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 269 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 298 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 SER A 105 REMARK 465 VAL A 106 REMARK 465 ALA A 107 REMARK 465 SER A 108 REMARK 465 LEU A 109 REMARK 465 LEU A 110 REMARK 465 GLU A 111 REMARK 465 GLY A 203 REMARK 465 ALA A 204 REMARK 465 THR A 205 REMARK 465 HIS A 206 REMARK 465 LEU A 207 REMARK 465 ASN A 208 REMARK 465 SER A 230 REMARK 465 ARG A 231 REMARK 465 LEU A 232 REMARK 465 PRO A 233 REMARK 465 ARG A 234 REMARK 465 PRO A 235 REMARK 465 ALA A 236 REMARK 465 PRO A 237 REMARK 465 GLY A 238 REMARK 465 GLN A 239 REMARK 465 LYS A 258 REMARK 465 THR A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 THR A 262 REMARK 465 GLY A 263 REMARK 465 GLU A 264 REMARK 465 LEU A 265 REMARK 465 ARG A 266 REMARK 465 LYS A 267 REMARK 465 GLU A 268 REMARK 465 SER A 269 REMARK 465 ILE A 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 LYS A 25 CD CE NZ REMARK 470 GLN A 32 CD OE1 NE2 REMARK 470 GLN A 36 CD OE1 NE2 REMARK 470 ARG A 48 CD NE CZ NH1 NH2 REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 ASP A 112 CG OD1 OD2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 170 NE CZ NH1 NH2 REMARK 470 HIS A 201 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 202 OG1 CG2 REMARK 470 LEU A 210 CG CD1 CD2 REMARK 470 ARG A 213 CD NE CZ NH1 NH2 REMARK 470 PRO A 229 CG CD REMARK 470 GLN A 271 CG CD OE1 NE2 REMARK 470 GLN A 290 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2080 O HOH A 2252 1.60 REMARK 500 O HOH A 2155 O HOH A 2252 1.77 REMARK 500 O HOH A 2127 O HOH A 2247 1.84 REMARK 500 O HOH A 2085 O HOH A 2212 1.94 REMARK 500 OE1 GLN A 69 NE2 GLN A 73 2.08 REMARK 500 O HOH A 2070 O HOH A 2142 2.09 REMARK 500 O HOH A 2238 O HOH A 2239 2.10 REMARK 500 N LEU A 240 O HOH A 2206 2.14 REMARK 500 OD1 ASP A 135 O HOH A 2136 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2012 O HOH A 2081 2454 0.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 88 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 10 132.90 -175.46 REMARK 500 GLU A 155 -89.05 -120.82 REMARK 500 VAL A 156 -11.75 93.04 REMARK 500 HIS A 201 -79.26 -71.04 REMARK 500 ARG A 227 97.25 93.68 REMARK 500 ALA A 228 73.47 89.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2015 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2081 DISTANCE = 7.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1346 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 98 OG1 REMARK 620 2 ADP A1345 O3B 84.4 REMARK 620 3 HOH A2104 O 91.1 171.2 REMARK 620 4 HOH A2213 O 84.2 98.9 88.1 REMARK 620 5 HOH A2284 O 175.9 99.7 84.9 95.0 REMARK 620 6 HOH A2285 O 85.4 86.4 85.7 167.8 94.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1346 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A14 RELATED DB: PDB REMARK 900 HUMAN KIF7, A KINESIN INVOLVED IN HEDGEHOG SIGNALLING REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-7 CONTAIN CHANGES DUE TO CLONING STRATEGY REMARK 999 MUTATIONS 226 E TO K, 268 R TO L, 269 L TO R, 298 H TO N. DBREF 2XT3 A 4 344 UNP Q2M1P5 KIF7_HUMAN 7 347 SEQADV 2XT3 GLY A 1 UNP Q2M1P5 EXPRESSION TAG SEQADV 2XT3 ALA A 2 UNP Q2M1P5 EXPRESSION TAG SEQADV 2XT3 MET A 3 UNP Q2M1P5 EXPRESSION TAG SEQADV 2XT3 LYS A 223 UNP Q2M1P5 GLU 226 ENGINEERED MUTATION SEQADV 2XT3 LEU A 265 UNP Q2M1P5 ARG 268 ENGINEERED MUTATION SEQADV 2XT3 ARG A 266 UNP Q2M1P5 LEU 269 ENGINEERED MUTATION SEQADV 2XT3 ASN A 295 UNP Q2M1P5 HIS 298 ENGINEERED MUTATION SEQRES 1 A 344 GLY ALA MET GLY LEU PRO GLY ALA GLU GLU ALA PRO VAL SEQRES 2 A 344 ARG VAL ALA LEU ARG VAL ARG PRO LEU LEU PRO LYS GLU SEQRES 3 A 344 LEU LEU HIS GLY HIS GLN SER CYS LEU GLN VAL GLU PRO SEQRES 4 A 344 GLY LEU GLY ARG VAL THR LEU GLY ARG ASP ARG HIS PHE SEQRES 5 A 344 GLY PHE HIS VAL VAL LEU ALA GLU ASP ALA GLY GLN GLU SEQRES 6 A 344 ALA VAL TYR GLN ALA CYS VAL GLN PRO LEU LEU GLU ALA SEQRES 7 A 344 PHE PHE GLU GLY PHE ASN ALA THR VAL PHE ALA TYR GLY SEQRES 8 A 344 GLN THR GLY SER GLY LYS THR TYR THR MET GLY GLU ALA SEQRES 9 A 344 SER VAL ALA SER LEU LEU GLU ASP GLU GLN GLY ILE VAL SEQRES 10 A 344 PRO ARG ALA MET ALA GLU ALA PHE LYS LEU ILE ASP GLU SEQRES 11 A 344 ASN ASP LEU LEU ASP CYS LEU VAL HIS VAL SER TYR LEU SEQRES 12 A 344 GLU VAL TYR LYS GLU GLU PHE ARG ASP LEU LEU GLU VAL SEQRES 13 A 344 GLY THR ALA SER ARG ASP ILE GLN LEU ARG GLU ASP GLU SEQRES 14 A 344 ARG GLY ASN VAL VAL LEU CYS GLY VAL LYS GLU VAL ASP SEQRES 15 A 344 VAL GLU GLY LEU ASP GLU VAL LEU SER LEU LEU GLU MET SEQRES 16 A 344 GLY ASN ALA ALA ARG HIS THR GLY ALA THR HIS LEU ASN SEQRES 17 A 344 HIS LEU SER SER ARG SER HIS THR VAL PHE THR VAL THR SEQRES 18 A 344 LEU LYS GLN ARG GLY ARG ALA PRO SER ARG LEU PRO ARG SEQRES 19 A 344 PRO ALA PRO GLY GLN LEU LEU VAL SER LYS PHE HIS PHE SEQRES 20 A 344 VAL ASP LEU ALA GLY SER GLU ARG VAL LEU LYS THR GLY SEQRES 21 A 344 SER THR GLY GLU LEU ARG LYS GLU SER ILE GLN ILE ASN SEQRES 22 A 344 SER SER LEU LEU ALA LEU GLY ASN VAL ILE SER ALA LEU SEQRES 23 A 344 GLY ASP PRO GLN ARG ARG GLY SER ASN ILE PRO TYR ARG SEQRES 24 A 344 ASP SER LYS ILE THR ARG ILE LEU LYS ASP SER LEU GLY SEQRES 25 A 344 GLY ASN ALA LYS THR VAL MET ILE ALA CYS VAL SER PRO SEQRES 26 A 344 SER SER SER ASP PHE ASP GLU THR LEU ASN THR LEU ASN SEQRES 27 A 344 TYR ALA SER ARG ALA GLN HET ADP A1345 27 HET MG A1346 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *290(H2 O) HELIX 1 1 LEU A 23 HIS A 29 1 7 HELIX 2 2 PRO A 39 LEU A 41 5 3 HELIX 3 3 GLY A 63 VAL A 72 1 10 HELIX 4 4 VAL A 72 GLU A 81 1 10 HELIX 5 5 GLY A 96 GLY A 102 1 7 HELIX 6 6 GLY A 115 ASN A 131 1 17 HELIX 7 7 ALA A 159 ILE A 163 5 5 HELIX 8 8 GLY A 185 THR A 202 1 18 HELIX 9 9 SER A 274 ASP A 288 1 15 HELIX 10 10 PRO A 297 ASP A 300 5 4 HELIX 11 11 SER A 301 LEU A 307 1 7 HELIX 12 12 LYS A 308 LEU A 311 5 4 HELIX 13 13 ASP A 329 ALA A 343 1 15 SHEET 1 AA 8 VAL A 56 LEU A 58 0 SHEET 2 AA 8 ARG A 14 VAL A 19 1 O VAL A 15 N VAL A 56 SHEET 3 AA 8 LYS A 316 VAL A 323 1 O THR A 317 N ARG A 14 SHEET 4 AA 8 ALA A 85 TYR A 90 1 O THR A 86 N VAL A 318 SHEET 5 AA 8 LEU A 241 ASP A 249 1 O LYS A 244 N ALA A 85 SHEET 6 AA 8 HIS A 215 GLY A 226 -1 O THR A 216 N ASP A 249 SHEET 7 AA 8 LEU A 134 TYR A 146 -1 O ASP A 135 N ARG A 225 SHEET 8 AA 8 GLU A 149 ASP A 152 -1 O GLU A 149 N TYR A 146 SHEET 1 AB 8 VAL A 56 LEU A 58 0 SHEET 2 AB 8 ARG A 14 VAL A 19 1 O VAL A 15 N VAL A 56 SHEET 3 AB 8 LYS A 316 VAL A 323 1 O THR A 317 N ARG A 14 SHEET 4 AB 8 ALA A 85 TYR A 90 1 O THR A 86 N VAL A 318 SHEET 5 AB 8 LEU A 241 ASP A 249 1 O LYS A 244 N ALA A 85 SHEET 6 AB 8 HIS A 215 GLY A 226 -1 O THR A 216 N ASP A 249 SHEET 7 AB 8 LEU A 134 TYR A 146 -1 O ASP A 135 N ARG A 225 SHEET 8 AB 8 VAL A 181 ASP A 182 -1 O VAL A 181 N VAL A 140 SHEET 1 AC 2 GLU A 149 ASP A 152 0 SHEET 2 AC 2 LEU A 134 TYR A 146 -1 O GLU A 144 N ARG A 151 SHEET 1 AD 3 LEU A 35 GLU A 38 0 SHEET 2 AD 3 ARG A 43 LEU A 46 -1 O ARG A 43 N GLU A 38 SHEET 3 AD 3 ARG A 50 GLY A 53 -1 O ARG A 50 N LEU A 46 SHEET 1 AE 2 GLN A 164 GLU A 167 0 SHEET 2 AE 2 VAL A 173 CYS A 176 -1 O VAL A 174 N ARG A 166 LINK OG1 THR A 98 MG MG A1346 1555 1555 2.17 LINK O3B ADP A1345 MG MG A1346 1555 1555 2.07 LINK MG MG A1346 O HOH A2104 1555 1555 2.28 LINK MG MG A1346 O HOH A2213 1555 1555 2.06 LINK MG MG A1346 O HOH A2284 1555 1555 1.97 LINK MG MG A1346 O HOH A2285 1555 1555 2.32 SITE 1 AC1 20 ARG A 18 PRO A 21 LEU A 23 GLN A 92 SITE 2 AC1 20 THR A 93 GLY A 94 SER A 95 GLY A 96 SITE 3 AC1 20 LYS A 97 THR A 98 TYR A 99 MG A1346 SITE 4 AC1 20 HOH A2283 HOH A2284 HOH A2285 HOH A2286 SITE 5 AC1 20 HOH A2287 HOH A2288 HOH A2289 HOH A2290 SITE 1 AC2 6 THR A 98 ADP A1345 HOH A2104 HOH A2213 SITE 2 AC2 6 HOH A2284 HOH A2285 CRYST1 45.920 79.790 94.840 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010544 0.00000