PDB Short entry for 2XTN HEADER IMMUNE SYSTEM 11-OCT-10 2XTN TITLE CRYSTAL STRUCTURE OF GTP-BOUND HUMAN GIMAP2, AMINO ACID TITLE 2 RESIDUES 1-234 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE IMAP FAMILY MEMBER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-234; COMPND 5 SYNONYM: GIMAP2, IMMUNITY-ASSOCIATED PROTEIN 2, HIMAP2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS IMMUNE SYSTEM, G PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.SCHWEFEL,C.FROEHLICH,O.DAUMKE REVDAT 4 08-DEC-10 2XTN 1 JRNL REVDAT 3 24-NOV-10 2XTN 1 JRNL REVDAT 2 17-NOV-10 2XTN 1 JRNL REVDAT 1 20-OCT-10 2XTN 0 JRNL AUTH D.SCHWEFEL,C.FROEHLICH,J.EICHHORST,B.WIESNER,J.BEHLKE, JRNL AUTH 2 L.ARAVIND,O.DAUMKE JRNL TITL STRUCTURAL BASIS OF OLIGOMERIZATION IN SEPTIN-LIKE GTPASE JRNL TITL 2 OF IMMUNITY-ASSOCIATED PROTEIN 2 (GIMAP2) JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 20299 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21059949 JRNL DOI 10.1073/PNAS.1010322107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.SCHWEFEL,C.FROHLICH,O.DAUMKE REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY X- RAY REMARK 1 TITL 2 ANALYSIS OF HUMAN GIMAP2. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 66 725 2010 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 20516611 REMARK 1 DOI 10.1107/S174430911001537X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.89 REMARK 3 NUMBER OF REFLECTIONS : 17886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18637 REMARK 3 R VALUE (WORKING SET) : 0.18456 REMARK 3 FREE R VALUE : 0.22109 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.900 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.949 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1284 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.236 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.292 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1599 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.901 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27 REMARK 3 B22 (A**2) : 0.73 REMARK 3 B33 (A**2) : -1.00 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.517 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1657 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2245 ; 1.403 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ;10.168 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;29.090 ;24.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 298 ;12.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;15.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 254 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1206 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 726 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1156 ; 0.293 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 106 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1087 ; 0.554 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1668 ; 0.903 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 670 ; 1.299 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 573 ; 2.099 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5489 15.5030 10.8825 REMARK 3 T TENSOR REMARK 3 T11: -0.0251 T22: -0.0425 REMARK 3 T33: -0.0322 T12: 0.0221 REMARK 3 T13: -0.0043 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.9974 L22: 0.9107 REMARK 3 L33: 2.5990 L12: 0.2718 REMARK 3 L13: 0.3346 L23: -0.3327 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: -0.0424 S13: -0.1897 REMARK 3 S21: 0.0207 S22: -0.0103 S23: -0.0396 REMARK 3 S31: 0.2478 S32: 0.0983 S33: -0.0223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8710 25.0297 12.8318 REMARK 3 T TENSOR REMARK 3 T11: -0.0496 T22: -0.0375 REMARK 3 T33: -0.0401 T12: 0.0212 REMARK 3 T13: -0.0021 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.3550 L22: 1.3890 REMARK 3 L33: 2.2112 L12: 0.5011 REMARK 3 L13: -0.0494 L23: -0.7988 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.0831 S13: 0.0988 REMARK 3 S21: 0.1017 S22: 0.0160 S23: 0.0666 REMARK 3 S31: -0.0696 S32: -0.1074 S33: -0.0276 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7795 17.2603 24.1405 REMARK 3 T TENSOR REMARK 3 T11: -0.3097 T22: 0.2185 REMARK 3 T33: -0.0655 T12: -0.0260 REMARK 3 T13: 0.0802 T23: 0.0976 REMARK 3 L TENSOR REMARK 3 L11: 5.0741 L22: 33.6532 REMARK 3 L33: 8.8816 L12: 3.9594 REMARK 3 L13: 4.2563 L23: -1.6682 REMARK 3 S TENSOR REMARK 3 S11: 0.6987 S12: -1.1375 S13: -0.3534 REMARK 3 S21: 0.9150 S22: -0.1907 S23: 1.1703 REMARK 3 S31: -0.1479 S32: -0.8519 S33: -0.5080 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2249 16.3094 5.1431 REMARK 3 T TENSOR REMARK 3 T11: -0.0710 T22: -0.0692 REMARK 3 T33: -0.0508 T12: -0.0064 REMARK 3 T13: -0.0108 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.2287 L22: 1.1008 REMARK 3 L33: 1.4269 L12: 0.4547 REMARK 3 L13: -0.0719 L23: 0.1576 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.0137 S13: -0.0382 REMARK 3 S21: -0.0667 S22: 0.1026 S23: 0.0748 REMARK 3 S31: 0.1799 S32: -0.2544 S33: -0.0850 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 3 ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. REMARK 3 ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2XTN COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-10. REMARK 100 THE PDBE ID CODE IS EBI-45738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (MX-225) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18848 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.1 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.1 REMARK 200 R MERGE FOR SHELL (I) : 0.53 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% 2-PROPANOL, 10 MM ATP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.00500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.00500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.31000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.00500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.60000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.31000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.00500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.60000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 HIS A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 TRP A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 HIS A 12 REMARK 465 ALA A 13 REMARK 465 LYS A 14 REMARK 465 GLY A 15 REMARK 465 GLN A 16 REMARK 465 CYS A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 ARG A 20 REMARK 465 ASN A 152 REMARK 465 GLY A 153 REMARK 465 GLY A 231 REMARK 465 SER A 232 REMARK 465 ASP A 233 REMARK 465 GLU A 234 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 55 CD OE1 NE2 REMARK 470 LYS A 85 CE NZ REMARK 470 LYS A 93 CD CE NZ REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 MET A 157 SD CE REMARK 470 ASP A 158 CG OD1 OD2 REMARK 470 HIS A 161 ND1 CD2 CE1 NE2 REMARK 470 ARG A 185 NE CZ NH1 NH2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 GLU A 197 OE1 OE2 REMARK 470 GLU A 203 CD OE1 OE2 REMARK 470 GLN A 223 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 221 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 79 -167.51 -78.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1232 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 36 OG REMARK 620 2 THR A 58 OG1 89.8 REMARK 620 3 GTP A1231 O2G 173.0 86.7 REMARK 620 4 GTP A1231 O1B 90.1 179.6 93.4 REMARK 620 5 HOH A2035 O 84.9 89.8 101.1 90.5 REMARK 620 6 HOH A2111 O 84.4 87.5 89.4 92.2 168.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A1231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1232 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XTO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GDP-BOUND HUMAN GIMAP2, REMARK 900 AMINO ACID RESIDUES 21-260 REMARK 900 RELATED ID: 2XTM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GDP-BOUND HUMAN GIMAP2, REMARK 900 AMINO ACID RESIDUES 1-234 REMARK 900 RELATED ID: 2XTP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE HUMAN REMARK 900 GIMAP2, AMINO ACID RESIDUES 1-260 DBREF 2XTN A 1 234 UNP Q9UG22 GIMA2_HUMAN 1 234 SEQRES 1 A 234 MET ASP GLN ASN GLU HIS SER HIS TRP GLY PRO HIS ALA SEQRES 2 A 234 LYS GLY GLN CYS ALA SER ARG SER GLU LEU ARG ILE ILE SEQRES 3 A 234 LEU VAL GLY LYS THR GLY THR GLY LYS SER ALA ALA GLY SEQRES 4 A 234 ASN SER ILE LEU ARG LYS GLN ALA PHE GLU SER LYS LEU SEQRES 5 A 234 GLY SER GLN THR LEU THR LYS THR CYS SER LYS SER GLN SEQRES 6 A 234 GLY SER TRP GLY ASN ARG GLU ILE VAL ILE ILE ASP THR SEQRES 7 A 234 PRO ASP MET PHE SER TRP LYS ASP HIS CYS GLU ALA LEU SEQRES 8 A 234 TYR LYS GLU VAL GLN ARG CYS TYR LEU LEU SER ALA PRO SEQRES 9 A 234 GLY PRO HIS VAL LEU LEU LEU VAL THR GLN LEU GLY ARG SEQRES 10 A 234 TYR THR SER GLN ASP GLN GLN ALA ALA GLN ARG VAL LYS SEQRES 11 A 234 GLU ILE PHE GLY GLU ASP ALA MET GLY HIS THR ILE VAL SEQRES 12 A 234 LEU PHE THR HIS LYS GLU ASP LEU ASN GLY GLY SER LEU SEQRES 13 A 234 MET ASP TYR MET HIS ASP SER ASP ASN LYS ALA LEU SER SEQRES 14 A 234 LYS LEU VAL ALA ALA CYS GLY GLY ARG ILE CYS ALA PHE SEQRES 15 A 234 ASN ASN ARG ALA GLU GLY SER ASN GLN ASP ASP GLN VAL SEQRES 16 A 234 LYS GLU LEU MET ASP CYS ILE GLU ASP LEU LEU MET GLU SEQRES 17 A 234 LYS ASN GLY ASP HIS TYR THR ASN GLY LEU TYR SER LEU SEQRES 18 A 234 ILE GLN ARG SER LYS CYS GLY PRO VAL GLY SER ASP GLU HET GTP A1231 32 HET MG A1232 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *113(H2 O) HELIX 1 1 GLY A 34 ARG A 44 1 11 HELIX 2 2 ALA A 90 ALA A 103 1 14 HELIX 3 3 THR A 119 GLY A 134 1 16 HELIX 4 4 ASP A 136 GLY A 139 5 4 HELIX 5 5 HIS A 147 LEU A 151 5 5 HELIX 6 6 SER A 155 SER A 163 1 9 HELIX 7 7 ASN A 165 CYS A 175 1 11 HELIX 8 8 GLU A 187 LYS A 209 1 23 HELIX 9 9 ASN A 216 GLY A 228 1 13 SHEET 1 AA 6 SER A 62 TRP A 68 0 SHEET 2 AA 6 ARG A 71 ASP A 77 -1 O ARG A 71 N TRP A 68 SHEET 3 AA 6 GLU A 22 VAL A 28 1 O LEU A 23 N VAL A 74 SHEET 4 AA 6 VAL A 108 GLN A 114 1 O VAL A 108 N ILE A 26 SHEET 5 AA 6 THR A 141 THR A 146 1 O ILE A 142 N LEU A 111 SHEET 6 AA 6 ILE A 179 ALA A 181 1 O CYS A 180 N PHE A 145 LINK O2G GTP A1231 MG MG A1232 1555 1555 2.09 LINK O1B GTP A1231 MG MG A1232 1555 1555 2.07 LINK MG MG A1232 O HOH A2035 1555 1555 2.18 LINK MG MG A1232 OG1 THR A 58 1555 1555 2.09 LINK MG MG A1232 O HOH A2111 1555 1555 2.20 LINK MG MG A1232 OG SER A 36 1555 1555 2.06 CISPEP 1 ALA A 103 PRO A 104 0 7.53 SITE 1 AC1 24 THR A 31 GLY A 32 THR A 33 GLY A 34 SITE 2 AC1 24 LYS A 35 SER A 36 ALA A 37 SER A 50 SITE 3 AC1 24 LYS A 51 LEU A 52 THR A 56 LEU A 57 SITE 4 AC1 24 THR A 58 HIS A 147 GLU A 149 ASP A 150 SITE 5 AC1 24 ASN A 184 ARG A 185 MG A1232 HOH A2015 SITE 6 AC1 24 HOH A2035 HOH A2111 HOH A2112 HOH A2113 SITE 1 AC2 5 SER A 36 THR A 58 GTP A1231 HOH A2035 SITE 2 AC2 5 HOH A2111 CRYST1 58.010 69.200 116.620 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008575 0.00000