PDB Short entry for 2XTO HEADER IMMUNE SYSTEM 11-OCT-10 2XTO TITLE CRYSTAL STRUCTURE OF GDP-BOUND HUMAN GIMAP2, AMINO ACID TITLE 2 RESIDUES 21-260 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE IMAP FAMILY MEMBER 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 21-260; COMPND 5 SYNONYM: IMMUNITY-ASSOCIATED PROTEIN 2, HIMAP2, GIMAP2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS IMMUNE SYSTEM, G PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.SCHWEFEL,C.FROEHLICH,O.DAUMKE REVDAT 4 08-DEC-10 2XTO 1 JRNL REVDAT 3 24-NOV-10 2XTO 1 JRNL REVDAT 2 17-NOV-10 2XTO 1 JRNL REVDAT 1 20-OCT-10 2XTO 0 JRNL AUTH D.SCHWEFEL,C.FROEHLICH,J.EICHHORST,B.WIESNER,J.BEHLKE, JRNL AUTH 2 L.ARAVIND,O.DAUMKE JRNL TITL STRUCTURAL BASIS OF OLIGOMERIZATION IN SEPTIN-LIKE GTPASE JRNL TITL 2 OF IMMUNITY-ASSOCIATED PROTEIN 2 (GIMAP2) JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 20299 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21059949 JRNL DOI 10.1073/PNAS.1010322107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.SCHWEFEL,C.FROEHLICH,O.DAUMKE REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 ANALYSIS OF HUMAN GIMAP2 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 66 725 2010 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 20516611 REMARK 1 DOI 10.1107/S174430911001537X REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.49 REMARK 3 NUMBER OF REFLECTIONS : 11467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.23176 REMARK 3 R VALUE (WORKING SET) : 0.22941 REMARK 3 FREE R VALUE : 0.27565 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.9 REMARK 3 FREE R VALUE TEST SET COUNT : 591 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.801 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.870 REMARK 3 REFLECTION IN BIN (WORKING SET) : 789 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.308 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.574 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.52 REMARK 3 B22 (A**2) : -0.97 REMARK 3 B33 (A**2) : 3.49 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.440 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.359 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.192 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3589 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4837 ; 0.970 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 4.528 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;38.038 ;24.907 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 663 ;17.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2635 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2202 ; 0.097 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3516 ; 0.202 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1387 ; 0.354 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1319 ; 0.591 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 21 A 256 4 REMARK 3 1 B 21 B 256 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1708 ; 0.32 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1708 ; 0.32 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1708 ; 0.15 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1708 ; 0.15 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9361 -18.8356 10.7252 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0782 REMARK 3 T33: 0.0471 T12: -0.0093 REMARK 3 T13: -0.0142 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.9797 L22: 2.4121 REMARK 3 L33: 2.1414 L12: 0.2297 REMARK 3 L13: 0.1735 L23: 0.9703 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.1710 S13: 0.0908 REMARK 3 S21: 0.0605 S22: -0.0524 S23: 0.0353 REMARK 3 S31: -0.0743 S32: -0.2223 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5359 -22.0567 -8.9669 REMARK 3 T TENSOR REMARK 3 T11: 0.4648 T22: 0.2769 REMARK 3 T33: 0.2525 T12: -0.0218 REMARK 3 T13: 0.0856 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 1.7166 L22: 3.3443 REMARK 3 L33: 1.2580 L12: -2.3502 REMARK 3 L13: 1.4681 L23: -2.0243 REMARK 3 S TENSOR REMARK 3 S11: 0.4760 S12: 0.3568 S13: -0.1203 REMARK 3 S21: -0.8539 S22: -0.3776 S23: 0.0897 REMARK 3 S31: 0.4296 S32: 0.2838 S33: -0.0984 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1338 -20.2603 8.2793 REMARK 3 T TENSOR REMARK 3 T11: 0.1062 T22: 0.3132 REMARK 3 T33: 0.0842 T12: 0.0480 REMARK 3 T13: -0.0694 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.8540 L22: 2.1191 REMARK 3 L33: 0.8648 L12: -1.2300 REMARK 3 L13: -0.8350 L23: -0.0509 REMARK 3 S TENSOR REMARK 3 S11: -0.1297 S12: -0.0277 S13: 0.1233 REMARK 3 S21: 0.1417 S22: 0.1820 S23: -0.0760 REMARK 3 S31: 0.0920 S32: 0.3515 S33: -0.0522 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1759 -0.6440 15.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.1727 REMARK 3 T33: 0.1284 T12: 0.0503 REMARK 3 T13: 0.0545 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 9.3308 L22: 7.1123 REMARK 3 L33: 18.5032 L12: 1.1582 REMARK 3 L13: 2.2077 L23: -3.3445 REMARK 3 S TENSOR REMARK 3 S11: -0.0867 S12: -0.4721 S13: 0.3274 REMARK 3 S21: 0.4154 S22: 0.4496 S23: 0.5665 REMARK 3 S31: -0.3872 S32: -0.8943 S33: -0.3629 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3044 11.6713 -4.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0437 REMARK 3 T33: 0.1230 T12: 0.0082 REMARK 3 T13: -0.0040 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.4230 L22: 1.5662 REMARK 3 L33: 2.7028 L12: -0.0135 REMARK 3 L13: -0.4790 L23: 0.3605 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.1683 S13: -0.0364 REMARK 3 S21: -0.0902 S22: 0.0591 S23: -0.0567 REMARK 3 S31: -0.0445 S32: 0.0812 S33: -0.0328 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 161 B 189 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0296 21.0404 3.5720 REMARK 3 T TENSOR REMARK 3 T11: 0.0541 T22: 0.1301 REMARK 3 T33: 0.1946 T12: 0.0523 REMARK 3 T13: 0.0780 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 3.8861 L22: 5.1491 REMARK 3 L33: 5.0749 L12: -2.0243 REMARK 3 L13: 3.9414 L23: -3.0237 REMARK 3 S TENSOR REMARK 3 S11: -0.1422 S12: -0.1369 S13: -0.1811 REMARK 3 S21: 0.0567 S22: 0.1737 S23: 0.4356 REMARK 3 S31: 0.0455 S32: 0.1077 S33: -0.0315 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 190 B 235 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6066 10.1253 -8.5707 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.0627 REMARK 3 T33: 0.1651 T12: -0.0389 REMARK 3 T13: -0.0660 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 5.0190 L22: 2.0047 REMARK 3 L33: 6.5788 L12: -0.3631 REMARK 3 L13: -0.9872 L23: -0.0785 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: 0.3527 S13: 0.0963 REMARK 3 S21: 0.0045 S22: -0.0564 S23: 0.1951 REMARK 3 S31: 0.0825 S32: -0.5057 S33: 0.0968 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 236 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2991 17.2289 -24.2756 REMARK 3 T TENSOR REMARK 3 T11: 0.3225 T22: 0.4734 REMARK 3 T33: 0.2830 T12: -0.0644 REMARK 3 T13: 0.0936 T23: 0.1500 REMARK 3 L TENSOR REMARK 3 L11: 9.3958 L22: 18.6017 REMARK 3 L33: 11.0274 L12: -3.6057 REMARK 3 L13: 5.6388 L23: 1.0652 REMARK 3 S TENSOR REMARK 3 S11: 0.1417 S12: 0.9586 S13: 0.5915 REMARK 3 S21: -1.1400 S22: -0.5203 S23: -1.1862 REMARK 3 S31: -0.5670 S32: 0.5199 S33: 0.3786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 3 ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. REMARK 3 ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2XTO COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-10. REMARK 100 THE PDBE ID CODE IS EBI-45737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12565 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.80 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.1 REMARK 200 R MERGE (I) : 0.22 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.3 REMARK 200 R MERGE FOR SHELL (I) : 0.6 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.89 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% 2-PROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.34000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.34000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 224 REMARK 465 SER A 225 REMARK 465 LYS A 226 REMARK 465 CYS A 227 REMARK 465 GLY A 228 REMARK 465 PRO A 229 REMARK 465 VAL A 230 REMARK 465 GLY A 231 REMARK 465 SER A 232 REMARK 465 ASP A 233 REMARK 465 GLU A 234 REMARK 465 LEU A 256 REMARK 465 ALA A 257 REMARK 465 GLU A 258 REMARK 465 ALA A 259 REMARK 465 ASN A 260 REMARK 465 ARG B 224 REMARK 465 SER B 225 REMARK 465 LYS B 226 REMARK 465 CYS B 227 REMARK 465 GLY B 228 REMARK 465 PRO B 229 REMARK 465 VAL B 230 REMARK 465 GLY B 231 REMARK 465 SER B 232 REMARK 465 ASP B 233 REMARK 465 GLU B 234 REMARK 465 THR B 254 REMARK 465 ALA B 255 REMARK 465 LEU B 256 REMARK 465 ALA B 257 REMARK 465 GLU B 258 REMARK 465 ALA B 259 REMARK 465 ASN B 260 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 70 CG OD1 ND2 REMARK 470 GLU A 72 CD OE1 OE2 REMARK 470 GLU A 208 CD OE1 OE2 REMARK 470 LYS B 170 CE NZ REMARK 470 GLN B 223 CG CD OE1 NE2 REMARK 470 ARG B 235 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 237 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 -11.32 73.53 REMARK 500 ASN B 70 -12.93 83.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1257 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 36 OG REMARK 620 2 GDP A1256 O1B 70.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1255 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 36 OG REMARK 620 2 GDP B1254 O3B 75.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A1256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1257 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XTN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GTP-BOUND HUMAN GIMAP2 REMARK 900 , AMINO ACID RESIDUES 1-234 REMARK 900 RELATED ID: 2XTM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GDP-BOUND HUMAN GIMAP2 REMARK 900 , AMINO ACID RESIDUES 1-234 REMARK 900 RELATED ID: 2XTP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE HUMAN REMARK 900 GIMAP2, AMINO ACID RESIDUES 1-260 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AMINO ACID RESIDUES 21-260 OF UNIPROT ENTRY Q9UG22 WERE REMARK 999 CLONED, PURIFIED, AND CRYSTALLIZED DBREF 2XTO A 21 260 UNP Q9UG22 GIMA2_HUMAN 21 260 DBREF 2XTO B 21 260 UNP Q9UG22 GIMA2_HUMAN 21 260 SEQRES 1 A 240 SER GLU LEU ARG ILE ILE LEU VAL GLY LYS THR GLY THR SEQRES 2 A 240 GLY LYS SER ALA ALA GLY ASN SER ILE LEU ARG LYS GLN SEQRES 3 A 240 ALA PHE GLU SER LYS LEU GLY SER GLN THR LEU THR LYS SEQRES 4 A 240 THR CYS SER LYS SER GLN GLY SER TRP GLY ASN ARG GLU SEQRES 5 A 240 ILE VAL ILE ILE ASP THR PRO ASP MET PHE SER TRP LYS SEQRES 6 A 240 ASP HIS CYS GLU ALA LEU TYR LYS GLU VAL GLN ARG CYS SEQRES 7 A 240 TYR LEU LEU SER ALA PRO GLY PRO HIS VAL LEU LEU LEU SEQRES 8 A 240 VAL THR GLN LEU GLY ARG TYR THR SER GLN ASP GLN GLN SEQRES 9 A 240 ALA ALA GLN ARG VAL LYS GLU ILE PHE GLY GLU ASP ALA SEQRES 10 A 240 MET GLY HIS THR ILE VAL LEU PHE THR HIS LYS GLU ASP SEQRES 11 A 240 LEU ASN GLY GLY SER LEU MET ASP TYR MET HIS ASP SER SEQRES 12 A 240 ASP ASN LYS ALA LEU SER LYS LEU VAL ALA ALA CYS GLY SEQRES 13 A 240 GLY ARG ILE CYS ALA PHE ASN ASN ARG ALA GLU GLY SER SEQRES 14 A 240 ASN GLN ASP ASP GLN VAL LYS GLU LEU MET ASP CYS ILE SEQRES 15 A 240 GLU ASP LEU LEU MET GLU LYS ASN GLY ASP HIS TYR THR SEQRES 16 A 240 ASN GLY LEU TYR SER LEU ILE GLN ARG SER LYS CYS GLY SEQRES 17 A 240 PRO VAL GLY SER ASP GLU ARG VAL LYS GLU PHE LYS GLN SEQRES 18 A 240 SER LEU ILE LYS TYR MET GLU THR GLN ARG SER TYR THR SEQRES 19 A 240 ALA LEU ALA GLU ALA ASN SEQRES 1 B 240 SER GLU LEU ARG ILE ILE LEU VAL GLY LYS THR GLY THR SEQRES 2 B 240 GLY LYS SER ALA ALA GLY ASN SER ILE LEU ARG LYS GLN SEQRES 3 B 240 ALA PHE GLU SER LYS LEU GLY SER GLN THR LEU THR LYS SEQRES 4 B 240 THR CYS SER LYS SER GLN GLY SER TRP GLY ASN ARG GLU SEQRES 5 B 240 ILE VAL ILE ILE ASP THR PRO ASP MET PHE SER TRP LYS SEQRES 6 B 240 ASP HIS CYS GLU ALA LEU TYR LYS GLU VAL GLN ARG CYS SEQRES 7 B 240 TYR LEU LEU SER ALA PRO GLY PRO HIS VAL LEU LEU LEU SEQRES 8 B 240 VAL THR GLN LEU GLY ARG TYR THR SER GLN ASP GLN GLN SEQRES 9 B 240 ALA ALA GLN ARG VAL LYS GLU ILE PHE GLY GLU ASP ALA SEQRES 10 B 240 MET GLY HIS THR ILE VAL LEU PHE THR HIS LYS GLU ASP SEQRES 11 B 240 LEU ASN GLY GLY SER LEU MET ASP TYR MET HIS ASP SER SEQRES 12 B 240 ASP ASN LYS ALA LEU SER LYS LEU VAL ALA ALA CYS GLY SEQRES 13 B 240 GLY ARG ILE CYS ALA PHE ASN ASN ARG ALA GLU GLY SER SEQRES 14 B 240 ASN GLN ASP ASP GLN VAL LYS GLU LEU MET ASP CYS ILE SEQRES 15 B 240 GLU ASP LEU LEU MET GLU LYS ASN GLY ASP HIS TYR THR SEQRES 16 B 240 ASN GLY LEU TYR SER LEU ILE GLN ARG SER LYS CYS GLY SEQRES 17 B 240 PRO VAL GLY SER ASP GLU ARG VAL LYS GLU PHE LYS GLN SEQRES 18 B 240 SER LEU ILE LYS TYR MET GLU THR GLN ARG SER TYR THR SEQRES 19 B 240 ALA LEU ALA GLU ALA ASN HET GDP A1256 28 HET MG A1257 1 HET GDP B1254 28 HET MG B1255 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) HELIX 1 1 GLY A 34 ARG A 44 1 11 HELIX 2 2 PRO A 79 TRP A 84 5 6 HELIX 3 3 ALA A 90 ALA A 103 1 14 HELIX 4 4 THR A 119 GLY A 134 1 16 HELIX 5 5 ASP A 136 GLY A 139 5 4 HELIX 6 6 HIS A 147 ASN A 152 5 6 HELIX 7 7 SER A 155 ASP A 162 1 8 HELIX 8 8 ASN A 165 CYS A 175 1 11 HELIX 9 9 GLY A 188 ASN A 210 1 23 HELIX 10 10 ASN A 216 ILE A 222 1 7 HELIX 11 11 ARG A 235 THR A 254 1 20 HELIX 12 12 GLY B 34 ARG B 44 1 11 HELIX 13 13 PRO B 79 TRP B 84 5 6 HELIX 14 14 ALA B 90 ALA B 103 1 14 HELIX 15 15 THR B 119 GLY B 134 1 16 HELIX 16 16 GLU B 135 GLY B 139 5 5 HELIX 17 17 HIS B 147 ASN B 152 5 6 HELIX 18 18 SER B 155 ASP B 162 1 8 HELIX 19 19 ASN B 165 CYS B 175 1 11 HELIX 20 20 GLY B 188 LYS B 209 1 22 HELIX 21 21 ASN B 216 GLN B 223 1 8 HELIX 22 22 ARG B 235 TYR B 253 1 19 SHEET 1 AA 6 SER A 62 TRP A 68 0 SHEET 2 AA 6 ARG A 71 ASP A 77 -1 O ARG A 71 N TRP A 68 SHEET 3 AA 6 LEU A 23 VAL A 28 1 O LEU A 23 N VAL A 74 SHEET 4 AA 6 VAL A 108 GLN A 114 1 O VAL A 108 N ILE A 26 SHEET 5 AA 6 THR A 141 THR A 146 1 O ILE A 142 N LEU A 111 SHEET 6 AA 6 ILE A 179 ALA A 181 1 O CYS A 180 N PHE A 145 SHEET 1 BA 6 SER B 62 TRP B 68 0 SHEET 2 BA 6 ARG B 71 ASP B 77 -1 O ARG B 71 N TRP B 68 SHEET 3 BA 6 LEU B 23 GLY B 29 1 O LEU B 23 N VAL B 74 SHEET 4 BA 6 VAL B 108 GLN B 114 1 O VAL B 108 N ILE B 26 SHEET 5 BA 6 THR B 141 THR B 146 1 O ILE B 142 N LEU B 111 SHEET 6 BA 6 ILE B 179 ALA B 181 1 O CYS B 180 N PHE B 145 LINK O1B GDP A1256 MG MG A1257 1555 1555 2.41 LINK MG MG A1257 OG SER A 36 1555 1555 2.43 LINK O3B GDP B1254 MG MG B1255 1555 1555 2.38 LINK MG MG B1255 OG SER B 36 1555 1555 2.45 CISPEP 1 ALA A 103 PRO A 104 0 3.16 CISPEP 2 ALA B 103 PRO B 104 0 -0.24 SITE 1 AC1 16 THR B 31 GLY B 32 THR B 33 GLY B 34 SITE 2 AC1 16 LYS B 35 SER B 36 ALA B 37 SER B 50 SITE 3 AC1 16 LYS B 51 LEU B 52 HIS B 147 GLU B 149 SITE 4 AC1 16 PHE B 182 ASN B 184 ARG B 185 MG B1255 SITE 1 AC2 3 SER B 36 GLU B 49 GDP B1254 SITE 1 AC3 16 GLY A 32 THR A 33 GLY A 34 LYS A 35 SITE 2 AC3 16 SER A 36 ALA A 37 SER A 50 LYS A 51 SITE 3 AC3 16 LEU A 52 HIS A 147 GLU A 149 PHE A 182 SITE 4 AC3 16 ASN A 183 ASN A 184 ARG A 185 MG A1257 SITE 1 AC4 2 SER A 36 GDP A1256 CRYST1 62.680 76.550 101.620 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009841 0.00000