PDB Short entry for 2XV7
HEADER    HORMONE                                 23-OCT-10   2XV7              
TITLE     CRYSTAL STRUCTURE OF VASCULAR ENDOTHELIAL GROWTH FACTOR D             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR D;                      
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: VEGF HOMOLOGY DOMAIN, RESIDUES 92-195;                     
COMPND   5 SYNONYM: C-FOS-INDUCED GROWTH FACTOR, VEGF-D, FIGF;                  
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 OTHER_DETAILS: N-GLYCOSYLATION AT ASN155 AND ASN185.                 
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;                            
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 7108;                                       
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: SF21;                                      
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS;                          
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC                                  
KEYWDS    ANGIOGENESIS, LYMPHANGIOGENESIS, HORMONE                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    V.-M.LEPPANEN,M.JELTSCH,A.ANISIMOV,D.TVOROGOV,K.AHO,N.KALKKINEN,      
AUTHOR   2 P.TOIVANEN,S.YLA-HERTTUALA,K.BALLMER-HOFER,K.ALITALO                 
REVDAT   4   20-DEC-23 2XV7    1       HETSYN                                   
REVDAT   3   29-JUL-20 2XV7    1       COMPND REMARK HETNAM LINK                
REVDAT   3 2                   1       SITE   ATOM                              
REVDAT   2   06-APR-11 2XV7    1       JRNL                                     
REVDAT   1   12-JAN-11 2XV7    0                                                
JRNL        AUTH   V.M.LEPPANEN,M.JELTSCH,A.ANISIMOV,D.TVOROGOV,K.AHO,          
JRNL        AUTH 2 N.KALKKINEN,P.TOIVANEN,S.YLA-HERTTUALA,K.BALLMER-HOFER,      
JRNL        AUTH 3 K.ALITALO                                                    
JRNL        TITL   STRUCTURAL DETERMINANTS OF VASCULAR ENDOTHELIAL GROWTH       
JRNL        TITL 2 FACTOR-D - RECEPTOR BINDING AND SPECIFICITY.                 
JRNL        REF    BLOOD                         V. 117  1507 2011              
JRNL        REFN                   ISSN 0006-4971                               
JRNL        PMID   21148085                                                     
JRNL        DOI    10.1182/BLOOD-2010-08-301549                                 
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE)                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 19.89                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.990                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 4543                           
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.263                           
REMARK   3   R VALUE            (WORKING SET) : 0.255                           
REMARK   3   FREE R VALUE                     : 0.333                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.000                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 454                             
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 19.8930 -  4.1742    1.00     1432   160  0.2362 0.3122        
REMARK   3     2  4.1742 -  3.3181    1.00     1348   149  0.2410 0.3476        
REMARK   3     3  3.3181 -  2.9002    0.99     1309   145  0.3392 0.3645        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.26                                          
REMARK   3   B_SOL              : 64.07                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.470            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.680           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 67.19                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 81.30                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 2.83260                                              
REMARK   3    B22 (A**2) : 2.83260                                              
REMARK   3    B33 (A**2) : -5.66510                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.010            900                                  
REMARK   3   ANGLE     :  1.543           1230                                  
REMARK   3   CHIRALITY :  0.089            166                                  
REMARK   3   PLANARITY :  0.011            143                                  
REMARK   3   DIHEDRAL  : 33.883            356                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 3                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: (CHAIN A AND RESID 91:194)                             
REMARK   3    ORIGIN FOR THE GROUP (A): -30.5644 -30.3984  -3.3104              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.4331 T22:  -0.0098                                     
REMARK   3      T33:   0.1665 T12:  -0.0204                                     
REMARK   3      T13:   0.1903 T23:   0.0495                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   1.7173 L22:   1.8608                                     
REMARK   3      L33:   1.1530 L12:  -0.0933                                     
REMARK   3      L13:  -0.7178 L23:  -2.5154                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.4120 S12:  -0.0494 S13:   0.3517                       
REMARK   3      S21:   0.2779 S22:   0.1999 S23:   0.0282                       
REMARK   3      S31:  -0.0193 S32:   0.2670 S33:  -0.3788                       
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    SELECTION: (CHAIN A AND RESID 400:404)                            
REMARK   3    ORIGIN FOR THE GROUP (A): -31.6475 -14.3973   0.0723              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   1.6103 T22:   0.5742                                     
REMARK   3      T33:   0.8548 T12:   0.4396                                     
REMARK   3      T13:   0.2078 T23:   0.0076                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.9281 L22:   5.0111                                     
REMARK   3      L33:   0.3538 L12:   0.1498                                     
REMARK   3      L13:  -0.2518 L23:  -1.1844                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.3513 S12:  -0.0885 S13:   1.0855                       
REMARK   3      S21:   0.2769 S22:  -0.2072 S23:  -1.0457                       
REMARK   3      S31:  -1.7349 S32:  -0.4917 S33:  -0.3324                       
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    SELECTION: (CHAIN A AND RESID 500:502)                            
REMARK   3    ORIGIN FOR THE GROUP (A): -19.1024 -32.8560   3.5458              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1854 T22:   0.8643                                     
REMARK   3      T33:   1.0574 T12:  -0.1873                                     
REMARK   3      T13:  -0.0562 T23:  -0.0684                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   2.0163 L22:   3.8979                                     
REMARK   3      L33:   9.1842 L12:  -7.3551                                     
REMARK   3      L13:   3.5174 L23:  -4.4129                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0581 S12:   0.1385 S13:  -3.3127                       
REMARK   3      S21:   0.0746 S22:  -0.2298 S23:  -0.5304                       
REMARK   3      S31:  -0.7080 S32:   1.9172 S33:   0.1628                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THE SIDECHAINS OF THE RESIDUES TYR94,     
REMARK   3  GLU97, LYS126, SER127, ASN129, SER169, VAL70, THR173, AND LYS190    
REMARK   3  ARE DISORDERED AND THE SIDECHAIN ATOMS WERE OMITTED FROM THE        
REMARK   3  REFINEMENT.                                                         
REMARK   4                                                                      
REMARK   4 2XV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-10.                  
REMARK 100 THE DEPOSITION ID IS D_1290045786.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 24-MAY-10                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 4.2                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SLS                                
REMARK 200  BEAMLINE                       : X06SA                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.00                               
REMARK 200  MONOCHROMATOR                  : SI(111) MONOCHROMATOR              
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS 6M                 
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XDS                                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 36742                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 80.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 8.800                              
REMARK 200  R MERGE                    (I) : 0.09000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 18.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 3.05                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 9.20                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.77000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.800                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: VEGF-C FROM PDB ENTRY 2X1W                           
REMARK 200                                                                      
REMARK 200 REMARK: NONE                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 50.00                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: A SINGLE VEGF-D CRYSTAL GREW IN 6        
REMARK 280  WEEKS AT ROOM TEMPERATURE OVER A RESERVOIR SOLUTION OF 0.1 M        
REMARK 280  PHOSPHATE/CITRATE BUFFER AT PH 4.2, 40 % ETHANOL (V/V), 5 % PEG     
REMARK 280  1000 (W/V).                                                         
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+5/6                                            
REMARK 290       6555   X-Y,X,Z+1/6                                             
REMARK 290       7555   Y,X,-Z+1/3                                              
REMARK 290       8555   X-Y,-Y,-Z                                               
REMARK 290       9555   -X,-X+Y,-Z+2/3                                          
REMARK 290      10555   -Y,-X,-Z+5/6                                            
REMARK 290      11555   -X+Y,Y,-Z+1/2                                           
REMARK 290      12555   X,X-Y,-Z+1/6                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       23.64667            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       47.29333            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       35.47000            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       59.11667            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       11.82333            
REMARK 290   SMTRY1   7 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   7  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000       23.64667            
REMARK 290   SMTRY1   8  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   9 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   9 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   9  0.000000  0.000000 -1.000000       47.29333            
REMARK 290   SMTRY1  10  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  10 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  10  0.000000  0.000000 -1.000000       59.11667            
REMARK 290   SMTRY1  11 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2  11  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3  11  0.000000  0.000000 -1.000000       35.47000            
REMARK 290   SMTRY1  12  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  12  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3  12  0.000000  0.000000 -1.000000       11.82333            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 15170 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 21.6 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2  0.500000 -0.866025  0.000000      -47.86000            
REMARK 350   BIOMT2   2 -0.866025 -0.500000  0.000000      -82.89595            
REMARK 350   BIOMT3   2  0.000000  0.000000 -1.000000      -11.82333            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A2010  LIES ON A SPECIAL POSITION.                          
REMARK 400                                                                      
REMARK 400 COMPOUND                                                             
REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 117 TO ALA                        
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ASP A    90                                                      
REMARK 465     ALA A   195                                                      
REMARK 465     HIS A   196                                                      
REMARK 465     HIS A   197                                                      
REMARK 465     HIS A   198                                                      
REMARK 465     HIS A   199                                                      
REMARK 465     HIS A   200                                                      
REMARK 465     HIS A   201                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     TYR A  94    CG   CD1  CD2  CE1  CE2  CZ   OH                    
REMARK 470     GLU A  97    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 126    CG   CD   CE   NZ                                   
REMARK 470     SER A 127    OG                                                  
REMARK 470     ASN A 129    CG   OD1  ND2                                       
REMARK 470     SER A 169    CB   OG                                             
REMARK 470     VAL A 170    CG1  CG2                                            
REMARK 470     THR A 173    OG1  CG2                                            
REMARK 470     LYS A 190    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    SER A 112   CB    SER A 112   OG      0.090                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    LEU A  99   CA  -  CB  -  CG  ANGL. DEV. = -14.8 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LYS A 100      -72.03    -22.06                                   
REMARK 500    LEU A 172      -41.12   -161.44                                   
REMARK 500    VAL A 175      138.75     69.14                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 610                                                                      
REMARK 610 MISSING HETEROATOM                                                   
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 610 I=INSERTION CODE):                                                   
REMARK 610   M RES C SSEQI                                                      
REMARK 610     MAN A  403                                                       
REMARK 610     MAN A  404                                                       
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 FIRST TWO RESIDUES (ASP, PRO) ARE CLONING ARTEFACTS AND              
REMARK 999 THERE IS A C-TERMINAL HEXAHISTIDINE TAG.                             
DBREF  2XV7 A   92   195  UNP    O43915   VEGFD_HUMAN     92    195             
SEQADV 2XV7 ASP A   90  UNP  O43915              EXPRESSION TAG                 
SEQADV 2XV7 PRO A   91  UNP  O43915              EXPRESSION TAG                 
SEQADV 2XV7 ALA A  117  UNP  O43915    CYS   117 ENGINEERED MUTATION            
SEQADV 2XV7 HIS A  196  UNP  O43915              EXPRESSION TAG                 
SEQADV 2XV7 HIS A  197  UNP  O43915              EXPRESSION TAG                 
SEQADV 2XV7 HIS A  198  UNP  O43915              EXPRESSION TAG                 
SEQADV 2XV7 HIS A  199  UNP  O43915              EXPRESSION TAG                 
SEQADV 2XV7 HIS A  200  UNP  O43915              EXPRESSION TAG                 
SEQADV 2XV7 HIS A  201  UNP  O43915              EXPRESSION TAG                 
SEQRES   1 A  112  ASP PRO THR PHE TYR ASP ILE GLU THR LEU LYS VAL ILE          
SEQRES   2 A  112  ASP GLU GLU TRP GLN ARG THR GLN CYS SER PRO ARG GLU          
SEQRES   3 A  112  THR ALA VAL GLU VAL ALA SER GLU LEU GLY LYS SER THR          
SEQRES   4 A  112  ASN THR PHE PHE LYS PRO PRO CYS VAL ASN VAL PHE ARG          
SEQRES   5 A  112  CYS GLY GLY CYS CYS ASN GLU GLU SER LEU ILE CYS MET          
SEQRES   6 A  112  ASN THR SER THR SER TYR ILE SER LYS GLN LEU PHE GLU          
SEQRES   7 A  112  ILE SER VAL PRO LEU THR SER VAL PRO GLU LEU VAL PRO          
SEQRES   8 A  112  VAL LYS VAL ALA ASN HIS THR GLY CYS LYS CYS LEU PRO          
SEQRES   9 A  112  THR ALA HIS HIS HIS HIS HIS HIS                              
MODRES 2XV7 ASN A  155  ASN  GLYCOSYLATION SITE                                 
MODRES 2XV7 ASN A  185  ASN  GLYCOSYLATION SITE                                 
HET    NAG  B   1      14                                                       
HET    NAG  B   2      14                                                       
HET    BMA  B   3      11                                                       
HET    NAG  C   1      14                                                       
HET    NAG  C   2      14                                                       
HET    BMA  C   3      11                                                       
HET    MAN  A 403      11                                                       
HET    MAN  A 404      11                                                       
HETNAM     NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE                         
HETNAM     BMA BETA-D-MANNOPYRANOSE                                             
HETNAM     MAN ALPHA-D-MANNOPYRANOSE                                            
HETSYN     NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-           
HETSYN   2 NAG  D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-          
HETSYN   3 NAG  2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE                         
HETSYN     BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE                               
HETSYN     MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE                              
FORMUL   2  NAG    4(C8 H15 N O6)                                               
FORMUL   2  BMA    2(C6 H12 O6)                                                 
FORMUL   4  MAN    2(C6 H12 O6)                                                 
FORMUL   6  HOH   *13(H2 O)                                                     
HELIX    1   1 THR A   92  THR A  109  1                                  18    
HELIX    2   2 ALA A  121  LEU A  124  5                                   4    
HELIX    3   3 LYS A  126  ASN A  129  5                                   4    
SHEET    1  AA 2 SER A 112  GLU A 119  0                                        
SHEET    2  AA 2 CYS A 136  GLY A 143 -1  O  VAL A 137   N  VAL A 118           
SHEET    1  AB 2 ILE A 152  PHE A 166  0                                        
SHEET    2  AB 2 LEU A 178  LEU A 192 -1  O  VAL A 179   N  LEU A 165           
SSBOND   1 CYS A  111    CYS A  153                          1555   1555  2.04  
SSBOND   2 CYS A  136    CYS A  145                          1555  10444  2.03  
SSBOND   3 CYS A  142    CYS A  189                          1555   1555  2.04  
SSBOND   4 CYS A  146    CYS A  191                          1555   1555  2.04  
LINK         ND2 ASN A 155                 C1  NAG B   1     1555   1555  1.46  
LINK         ND2 ASN A 185                 C1  NAG C   1     1555   1555  1.44  
LINK         O4  NAG B   1                 C1  NAG B   2     1555   1555  1.44  
LINK         O4  NAG B   2                 C1  BMA B   3     1555   1555  1.43  
LINK         O4  NAG C   1                 C1  NAG C   2     1555   1555  1.44  
LINK         O4  NAG C   2                 C1  BMA C   3     1555   1555  1.45  
CISPEP   1 LYS A  133    PRO A  134          0        -3.38                     
CISPEP   2 VAL A  170    PRO A  171          0       -10.31                     
CISPEP   3 PRO A  171    LEU A  172          0        -1.97                     
CISPEP   4 THR A  173    SER A  174          0         5.86                     
CISPEP   5 PRO A  193    THR A  194          0       -10.92                     
CRYST1   95.720   95.720   70.940  90.00  90.00 120.00 P 61 2 2     12          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010447  0.006032  0.000000        0.00000                         
SCALE2      0.000000  0.012063  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.014096        0.00000