PDB Short entry for 2XWU HEADER LIGASE/NUCLEAR PROTEIN 05-NOV-10 2XWU TITLE CRYSTAL STRUCTURE OF IMPORTIN 13 - UBC9 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUMO-CONJUGATING ENZYME UBC9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SUMO-PROTEIN LIGASE, UBIQUITIN CARRIER PROTEIN 9, UBIQUITIN COMPND 5 CARRIER PROTEIN I, UBIQUITIN-CONJUGATING ENZYME E2 I, UBIQUITIN- COMPND 6 PROTEIN LIGASE I, P18, UBC9; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: IMPORTIN13; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: IMP13, KARYOPHERIN-13, KAP13, RAN-BINDING PROTEIN 13, COMPND 13 RANBP13; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE-NUCLEAR PROTEIN COMPLEX, NUCLEAR IMPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.GRUENWALD,F.BONO REVDAT 3 20-DEC-23 2XWU 1 REMARK REVDAT 2 06-APR-11 2XWU 1 JRNL REMARK REVDAT 1 29-DEC-10 2XWU 0 JRNL AUTH M.GRUENWALD,F.BONO JRNL TITL STRUCTURE OF IMPORTIN13-UBC9 COMPLEX: NUCLEAR IMPORT AND JRNL TITL 2 RELEASE OF A KEY REGULATOR OF SUMOYLATION. JRNL REF EMBO J. V. 30 427 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21139563 JRNL DOI 10.1038/EMBOJ.2010.320 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3441228.860 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 31.2000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 2.92000 REMARK 3 B33 (A**2) : -3.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.53 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.405 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 62.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1290046109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2X19 AND 1U9A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES PH 6.5 25% PEG 300 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 3 REMARK 465 ARG B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 PRO B 17 REMARK 465 ALA B 18 REMARK 465 GLU B 153 REMARK 465 ASP B 154 REMARK 465 SER B 155 REMARK 465 SER B 457 REMARK 465 GLU B 458 REMARK 465 GLU B 459 REMARK 465 PRO B 460 REMARK 465 HIS B 656 REMARK 465 GLU B 657 REMARK 465 ASP B 658 REMARK 465 ASP B 659 REMARK 465 HIS B 660 REMARK 465 GLU B 661 REMARK 465 GLY B 662 REMARK 465 PRO B 663 REMARK 465 GLU B 664 REMARK 465 LEU B 665 REMARK 465 ARG B 666 REMARK 465 LYS B 667 REMARK 465 LEU B 668 REMARK 465 PRO B 669 REMARK 465 VAL B 670 REMARK 465 PRO B 671 REMARK 465 GLN B 672 REMARK 465 GLY B 673 REMARK 465 HIS B 955 REMARK 465 GLY B 956 REMARK 465 THR B 957 REMARK 465 ASP B 958 REMARK 465 TYR B 959 REMARK 465 THR B 960 REMARK 465 ALA B 961 REMARK 465 ASP B 962 REMARK 465 TYR B 963 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 4 CG1 CG2 CD1 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ASP A 33 CG OD1 OD2 REMARK 470 THR A 35 OG1 CG2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 SER A 95 OG REMARK 470 GLN A 126 CG CD OE1 NE2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 SER A 158 OG REMARK 470 LEU B 19 CG CD1 CD2 REMARK 470 ASP B 20 CG OD1 OD2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 ILE B 39 CG1 CG2 CD1 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLN B 51 CG CD OE1 NE2 REMARK 470 SER B 91 OG REMARK 470 SER B 100 OG REMARK 470 GLN B 104 CG CD OE1 NE2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 PRO B 156 CG CD REMARK 470 VAL B 157 CG1 CG2 REMARK 470 ARG B 162 CG CD NE CZ NH1 NH2 REMARK 470 SER B 180 OG REMARK 470 GLN B 184 CG CD OE1 NE2 REMARK 470 TYR B 185 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 LEU B 189 CG CD1 CD2 REMARK 470 SER B 193 OG REMARK 470 GLN B 210 CG CD OE1 NE2 REMARK 470 GLN B 211 CG CD OE1 NE2 REMARK 470 GLN B 220 CG CD OE1 NE2 REMARK 470 GLN B 251 CG CD OE1 NE2 REMARK 470 SER B 253 OG REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 SER B 258 OG REMARK 470 GLN B 273 CG CD OE1 NE2 REMARK 470 ARG B 274 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 276 CG1 CG2 REMARK 470 GLN B 295 CG CD OE1 NE2 REMARK 470 SER B 320 OG REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 GLN B 368 CG CD OE1 NE2 REMARK 470 GLU B 375 CG CD OE1 OE2 REMARK 470 GLU B 377 CG CD OE1 OE2 REMARK 470 GLN B 384 CG CD OE1 NE2 REMARK 470 GLU B 407 CG CD OE1 OE2 REMARK 470 GLU B 408 CG CD OE1 OE2 REMARK 470 SER B 414 OG REMARK 470 GLU B 441 CG CD OE1 OE2 REMARK 470 ARG B 452 CG CD NE CZ NH1 NH2 REMARK 470 SER B 456 OG REMARK 470 TYR B 461 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 485 OG REMARK 470 SER B 499 OG REMARK 470 SER B 529 OG REMARK 470 SER B 585 OG REMARK 470 GLN B 602 CG CD OE1 NE2 REMARK 470 VAL B 603 CG1 CG2 REMARK 470 GLU B 604 CG CD OE1 OE2 REMARK 470 LYS B 608 CG CD CE NZ REMARK 470 SER B 615 OG REMARK 470 ILE B 618 CG1 CG2 CD1 REMARK 470 GLN B 619 CG CD OE1 NE2 REMARK 470 LEU B 624 CG CD1 CD2 REMARK 470 GLU B 626 CG CD OE1 OE2 REMARK 470 ILE B 628 CG1 CG2 CD1 REMARK 470 LYS B 634 CG CD CE NZ REMARK 470 ILE B 637 CG1 CG2 CD1 REMARK 470 SER B 654 OG REMARK 470 HIS B 655 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 675 CG OD1 ND2 REMARK 470 GLN B 682 CG CD OE1 NE2 REMARK 470 GLN B 686 CG CD OE1 NE2 REMARK 470 LEU B 687 CG CD1 CD2 REMARK 470 ILE B 688 CG1 CG2 CD1 REMARK 470 LYS B 690 CG CD CE NZ REMARK 470 LYS B 694 CG CD CE NZ REMARK 470 VAL B 702 CG1 CG2 REMARK 470 ARG B 733 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 749 CG CD OE1 NE2 REMARK 470 GLU B 757 CG CD OE1 OE2 REMARK 470 GLU B 765 CG CD OE1 OE2 REMARK 470 LYS B 804 CG CD CE NZ REMARK 470 GLU B 811 CG CD OE1 OE2 REMARK 470 ARG B 812 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 827 CG CD CE NZ REMARK 470 GLU B 852 CG CD OE1 OE2 REMARK 470 SER B 853 OG REMARK 470 LYS B 856 CG CD CE NZ REMARK 470 GLN B 859 CG CD OE1 NE2 REMARK 470 ARG B 863 CG CD NE CZ NH1 NH2 REMARK 470 SER B 878 OG REMARK 470 SER B 880 OG REMARK 470 SER B 901 OG REMARK 470 ILE B 904 CG1 CG2 CD1 REMARK 470 LYS B 905 CG CD CE NZ REMARK 470 GLN B 909 CG CD OE1 NE2 REMARK 470 SER B 919 OG REMARK 470 GLU B 921 CG CD OE1 OE2 REMARK 470 ASP B 924 CG OD1 OD2 REMARK 470 GLN B 928 CG CD OE1 NE2 REMARK 470 GLU B 933 CG CD OE1 OE2 REMARK 470 ARG B 934 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 938 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 939 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 946 CG CD OE1 OE2 REMARK 470 LEU B 954 CA C O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 565 CD1 TYR B 565 CE1 -0.158 REMARK 500 TYR B 565 CE2 TYR B 565 CD2 -0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 156 N - CA - CB ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 83 137.88 -177.51 REMARK 500 LYS A 101 -71.09 -115.92 REMARK 500 TYR B 89 67.71 -114.63 REMARK 500 TYR B 275 73.65 -110.89 REMARK 500 TRP B 330 -36.69 -39.01 REMARK 500 ALA B 376 -130.49 60.63 REMARK 500 PRO B 496 -1.83 -59.57 REMARK 500 LEU B 717 -118.87 62.77 REMARK 500 ALA B 721 -39.71 -34.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 365 0.07 SIDE CHAIN REMARK 500 TYR B 484 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GRO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RANGAP1-UBC9-N85Q REMARK 900 RELATED ID: 2GRR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RANGAP1-UBC9-D127S REMARK 900 RELATED ID: 1KPS RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR E2-MEDIATED SUMO CONJUGATION REVEALEDBY A REMARK 900 COMPLEX BETWEEN UBIQUITIN CONJUGATING ENZYME UBC9 ANDRANGAP1 REMARK 900 RELATED ID: 2GRP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RANGAP1-UBC9-Y87A REMARK 900 RELATED ID: 1Z5S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A COMPLEX BETWEEN UBC9, SUMO-1, RANGAP1 AND REMARK 900 NUP358/RANBP2 REMARK 900 RELATED ID: 2X19 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF IMPORTIN13 - RANGTP COMPLEX REMARK 900 RELATED ID: 2GRQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RANGAP1-UBC9-D127A REMARK 900 RELATED ID: 1A3S RELATED DB: PDB REMARK 900 HUMAN UBC9 REMARK 900 RELATED ID: 2GRN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RANGAP1-UBC9 DBREF 2XWU A 1 158 UNP P63279 UBC9_HUMAN 1 158 DBREF 2XWU B 1 963 UNP O94829 IPO13_HUMAN 1 963 SEQRES 1 A 158 MET SER GLY ILE ALA LEU SER ARG LEU ALA GLN GLU ARG SEQRES 2 A 158 LYS ALA TRP ARG LYS ASP HIS PRO PHE GLY PHE VAL ALA SEQRES 3 A 158 VAL PRO THR LYS ASN PRO ASP GLY THR MET ASN LEU MET SEQRES 4 A 158 ASN TRP GLU CYS ALA ILE PRO GLY LYS LYS GLY THR PRO SEQRES 5 A 158 TRP GLU GLY GLY LEU PHE LYS LEU ARG MET LEU PHE LYS SEQRES 6 A 158 ASP ASP TYR PRO SER SER PRO PRO LYS CYS LYS PHE GLU SEQRES 7 A 158 PRO PRO LEU PHE HIS PRO ASN VAL TYR PRO SER GLY THR SEQRES 8 A 158 VAL CYS LEU SER ILE LEU GLU GLU ASP LYS ASP TRP ARG SEQRES 9 A 158 PRO ALA ILE THR ILE LYS GLN ILE LEU LEU GLY ILE GLN SEQRES 10 A 158 GLU LEU LEU ASN GLU PRO ASN ILE GLN ASP PRO ALA GLN SEQRES 11 A 158 ALA GLU ALA TYR THR ILE TYR CYS GLN ASN ARG VAL GLU SEQRES 12 A 158 TYR GLU LYS ARG VAL ARG ALA GLN ALA LYS LYS PHE ALA SEQRES 13 A 158 PRO SER SEQRES 1 B 963 MET GLU ARG ARG GLU GLU GLN PRO GLY ALA ALA GLY ALA SEQRES 2 B 963 GLY ALA ALA PRO ALA LEU ASP PHE THR VAL GLU ASN VAL SEQRES 3 B 963 GLU LYS ALA LEU HIS GLN LEU TYR TYR ASP PRO ASN ILE SEQRES 4 B 963 GLU ASN LYS ASN LEU ALA GLN LYS TRP LEU MET GLN ALA SEQRES 5 B 963 GLN VAL SER PRO GLN ALA TRP HIS PHE SER TRP GLN LEU SEQRES 6 B 963 LEU GLN PRO ASP LYS VAL PRO GLU ILE GLN TYR PHE GLY SEQRES 7 B 963 ALA SER ALA LEU HIS ILE LYS ILE SER ARG TYR TRP SER SEQRES 8 B 963 ASP ILE PRO THR ASP GLN TYR GLU SER LEU LYS ALA GLN SEQRES 9 B 963 LEU PHE THR GLN ILE THR ARG PHE ALA SER GLY SER LYS SEQRES 10 B 963 ILE VAL LEU THR ARG LEU CYS VAL ALA LEU ALA SER LEU SEQRES 11 B 963 ALA LEU SER MET MET PRO ASP ALA TRP PRO CYS ALA VAL SEQRES 12 B 963 ALA ASP MET VAL ARG LEU PHE GLN ALA GLU ASP SER PRO SEQRES 13 B 963 VAL ASP GLY GLN GLY ARG CYS LEU ALA LEU LEU GLU LEU SEQRES 14 B 963 LEU THR VAL LEU PRO GLU GLU PHE GLN THR SER ARG LEU SEQRES 15 B 963 PRO GLN TYR ARG LYS GLY LEU VAL ARG THR SER LEU ALA SEQRES 16 B 963 VAL GLU CYS GLY ALA VAL PHE PRO LEU LEU GLU GLN LEU SEQRES 17 B 963 LEU GLN GLN PRO SER SER PRO SER CYS VAL ARG GLN LYS SEQRES 18 B 963 VAL LEU LYS CYS PHE SER SER TRP VAL GLN LEU GLU VAL SEQRES 19 B 963 PRO LEU GLN ASP CYS GLU ALA LEU ILE GLN ALA ALA PHE SEQRES 20 B 963 ALA ALA LEU GLN ASP SER GLU LEU PHE ASP SER SER VAL SEQRES 21 B 963 GLU ALA ILE VAL ASN ALA ILE SER GLN PRO ASP ALA GLN SEQRES 22 B 963 ARG TYR VAL ASN THR LEU LEU LYS LEU ILE PRO LEU VAL SEQRES 23 B 963 LEU GLY LEU GLN GLU GLN LEU ARG GLN ALA VAL GLN ASN SEQRES 24 B 963 GLY ASP MET GLU THR SER HIS GLY ILE CYS ARG ILE ALA SEQRES 25 B 963 VAL ALA LEU GLY GLU ASN HIS SER ARG ALA LEU LEU ASP SEQRES 26 B 963 GLN VAL GLU HIS TRP GLN SER PHE LEU ALA LEU VAL ASN SEQRES 27 B 963 MET ILE MET PHE CYS THR GLY ILE PRO GLY HIS TYR PRO SEQRES 28 B 963 VAL ASN GLU THR THR SER SER LEU THR LEU THR PHE TRP SEQRES 29 B 963 TYR THR LEU GLN ASP ASP ILE LEU SER PHE GLU ALA GLU SEQRES 30 B 963 LYS GLN ALA VAL TYR GLN GLN VAL TYR ARG PRO VAL TYR SEQRES 31 B 963 PHE GLN LEU VAL ASP VAL LEU LEU HIS LYS ALA GLN PHE SEQRES 32 B 963 PRO SER ASP GLU GLU TYR GLY PHE TRP SER SER ASP GLU SEQRES 33 B 963 LYS GLU GLN PHE ARG ILE TYR ARG VAL ASP ILE SER ASP SEQRES 34 B 963 THR LEU MET TYR VAL TYR GLU MET LEU GLY ALA GLU LEU SEQRES 35 B 963 LEU SER ASN LEU TYR ASP LYS LEU GLY ARG LEU LEU THR SEQRES 36 B 963 SER SER GLU GLU PRO TYR SER TRP GLN HIS THR GLU ALA SEQRES 37 B 963 LEU LEU TYR GLY PHE GLN SER ILE ALA GLU THR ILE ASP SEQRES 38 B 963 VAL ASN TYR SER ASP VAL VAL PRO GLY LEU ILE GLY LEU SEQRES 39 B 963 ILE PRO ARG ILE SER ILE SER ASN VAL GLN LEU ALA ASP SEQRES 40 B 963 THR VAL MET PHE THR ILE GLY ALA LEU SER GLU TRP LEU SEQRES 41 B 963 ALA ASP HIS PRO VAL MET ILE ASN SER VAL LEU PRO LEU SEQRES 42 B 963 VAL LEU HIS ALA LEU GLY ASN PRO GLU LEU SER VAL SER SEQRES 43 B 963 SER VAL SER THR LEU LYS LYS ILE CYS ARG GLU CYS LYS SEQRES 44 B 963 TYR ASP LEU PRO PRO TYR ALA ALA ASN ILE VAL ALA VAL SEQRES 45 B 963 SER GLN ASP VAL LEU MET LYS GLN ILE HIS LYS THR SER SEQRES 46 B 963 GLN CYS MET TRP LEU MET GLN ALA LEU GLY PHE LEU LEU SEQRES 47 B 963 SER ALA LEU GLN VAL GLU GLU ILE LEU LYS ASN LEU HIS SEQRES 48 B 963 SER LEU ILE SER PRO TYR ILE GLN GLN LEU GLU LYS LEU SEQRES 49 B 963 ALA GLU GLU ILE PRO ASN PRO SER ASN LYS LEU ALA ILE SEQRES 50 B 963 VAL HIS ILE LEU GLY LEU LEU SER ASN LEU PHE THR THR SEQRES 51 B 963 LEU ASP ILE SER HIS HIS GLU ASP ASP HIS GLU GLY PRO SEQRES 52 B 963 GLU LEU ARG LYS LEU PRO VAL PRO GLN GLY PRO ASN PRO SEQRES 53 B 963 VAL VAL VAL VAL LEU GLN GLN VAL PHE GLN LEU ILE GLN SEQRES 54 B 963 LYS VAL LEU SER LYS TRP LEU ASN ASP ALA GLN VAL VAL SEQRES 55 B 963 GLU ALA VAL CYS ALA ILE PHE GLU LYS SER VAL LYS THR SEQRES 56 B 963 LEU LEU ASP ASP PHE ALA PRO MET VAL PRO GLN LEU CYS SEQRES 57 B 963 GLU MET LEU GLY ARG MET TYR SER THR ILE PRO GLN ALA SEQRES 58 B 963 SER ALA LEU ASP LEU THR ARG GLN LEU VAL HIS ILE PHE SEQRES 59 B 963 ALA HIS GLU PRO ALA HIS PHE PRO PRO ILE GLU ALA LEU SEQRES 60 B 963 PHE LEU LEU VAL THR SER VAL THR LEU THR LEU PHE GLN SEQRES 61 B 963 GLN GLY PRO ARG ASP HIS PRO ASP ILE VAL ASP SER PHE SEQRES 62 B 963 MET GLN LEU LEU ALA GLN ALA LEU LYS ARG LYS PRO ASP SEQRES 63 B 963 LEU PHE LEU CYS GLU ARG LEU ASP VAL LYS ALA VAL PHE SEQRES 64 B 963 GLN CYS ALA VAL LEU ALA LEU LYS PHE PRO GLU ALA PRO SEQRES 65 B 963 THR VAL LYS ALA SER CYS GLY PHE PHE THR GLU LEU LEU SEQRES 66 B 963 PRO ARG CYS GLY GLU VAL GLU SER VAL GLY LYS VAL VAL SEQRES 67 B 963 GLN GLU ASP GLY ARG MET LEU LEU ILE ALA VAL LEU GLU SEQRES 68 B 963 ALA ILE GLY GLY GLN ALA SER ARG SER LEU MET ASP CYS SEQRES 69 B 963 PHE ALA ASP ILE LEU PHE ALA LEU ASN LYS HIS CYS PHE SEQRES 70 B 963 SER LEU LEU SER MET TRP ILE LYS GLU ALA LEU GLN PRO SEQRES 71 B 963 PRO GLY PHE PRO SER ALA ARG LEU SER PRO GLU GLN LYS SEQRES 72 B 963 ASP THR PHE SER GLN GLN ILE LEU ARG GLU ARG VAL ASN SEQRES 73 B 963 LYS ARG ARG VAL LYS GLU MET VAL LYS GLU PHE THR LEU SEQRES 74 B 963 LEU CYS ARG GLY LEU HIS GLY THR ASP TYR THR ALA ASP SEQRES 75 B 963 TYR FORMUL 3 HOH *36(H2 O) HELIX 1 1 MET A 1 ASP A 19 1 19 HELIX 2 2 LEU A 94 GLU A 98 5 5 HELIX 3 3 THR A 108 GLU A 122 1 15 HELIX 4 4 GLN A 130 ASN A 140 1 11 HELIX 5 5 ASN A 140 PHE A 155 1 16 HELIX 6 6 THR B 22 ASP B 36 1 15 HELIX 7 7 ASN B 38 SER B 55 1 18 HELIX 8 8 GLN B 57 LEU B 65 1 9 HELIX 9 9 VAL B 71 TYR B 89 1 19 HELIX 10 10 TRP B 90 ILE B 93 5 4 HELIX 11 11 PRO B 94 ASP B 96 5 3 HELIX 12 12 GLN B 97 PHE B 112 1 16 HELIX 13 13 SER B 116 MET B 135 1 20 HELIX 14 14 CYS B 141 ALA B 152 1 12 HELIX 15 15 ASP B 158 SER B 180 1 23 HELIX 16 16 PRO B 183 GLN B 211 1 29 HELIX 17 17 PRO B 215 GLN B 231 1 17 HELIX 18 18 PRO B 235 LEU B 250 1 16 HELIX 19 19 LEU B 255 SER B 268 1 14 HELIX 20 20 ASP B 271 ARG B 274 5 4 HELIX 21 21 TYR B 275 GLY B 288 1 14 HELIX 22 22 LEU B 289 GLY B 300 1 12 HELIX 23 23 ASP B 301 HIS B 319 1 19 HELIX 24 24 HIS B 319 GLN B 326 1 8 HELIX 25 25 HIS B 329 GLY B 345 1 17 HELIX 26 26 THR B 356 LEU B 359 5 4 HELIX 27 27 THR B 360 PHE B 374 1 15 HELIX 28 28 ALA B 376 ALA B 401 1 26 HELIX 29 29 SER B 405 PHE B 411 1 7 HELIX 30 30 SER B 413 GLY B 439 1 27 HELIX 31 31 GLY B 439 SER B 456 1 18 HELIX 32 32 SER B 462 GLU B 478 1 17 HELIX 33 33 ASP B 486 ILE B 495 1 10 HELIX 34 34 PRO B 496 ILE B 498 5 3 HELIX 35 35 ASN B 502 LEU B 516 1 15 HELIX 36 36 LEU B 516 HIS B 523 1 8 HELIX 37 37 MET B 526 LEU B 538 1 13 HELIX 38 38 ASN B 540 GLU B 542 5 3 HELIX 39 39 LEU B 543 CYS B 558 1 16 HELIX 40 40 LYS B 559 LEU B 562 5 4 HELIX 41 41 TYR B 565 LYS B 579 1 15 HELIX 42 42 LYS B 583 ALA B 600 1 18 HELIX 43 43 GLN B 602 GLU B 626 1 25 HELIX 44 44 ASN B 630 LEU B 651 1 22 HELIX 45 45 ASN B 675 LEU B 696 1 22 HELIX 46 46 ASP B 698 LEU B 717 1 20 HELIX 47 47 ASP B 718 PRO B 722 5 5 HELIX 48 48 MET B 723 ILE B 738 1 16 HELIX 49 49 GLN B 740 ALA B 755 1 16 HELIX 50 50 PHE B 761 GLY B 782 1 22 HELIX 51 51 HIS B 786 LYS B 804 1 19 HELIX 52 52 PRO B 805 CYS B 810 5 6 HELIX 53 53 ASP B 814 LEU B 826 1 13 HELIX 54 54 GLU B 830 LEU B 845 1 16 HELIX 55 55 VAL B 851 GLY B 875 1 25 HELIX 56 56 SER B 878 SER B 880 5 3 HELIX 57 57 LEU B 881 CYS B 896 1 16 HELIX 58 58 CYS B 896 GLN B 909 1 14 HELIX 59 59 SER B 919 LEU B 931 1 13 HELIX 60 60 ASN B 936 GLY B 953 1 18 SHEET 1 AA 4 VAL A 25 LYS A 30 0 SHEET 2 AA 4 MET A 36 PRO A 46 -1 O ASN A 37 N THR A 29 SHEET 3 AA 4 LEU A 57 LEU A 63 -1 O PHE A 58 N ILE A 45 SHEET 4 AA 4 LYS A 74 PHE A 77 -1 O LYS A 74 N LEU A 63 CISPEP 1 TYR A 68 PRO A 69 0 1.29 CISPEP 2 GLU A 78 PRO A 79 0 2.07 CISPEP 3 MET B 135 PRO B 136 0 0.88 CISPEP 4 TYR B 350 PRO B 351 0 -0.29 CISPEP 5 PHE B 913 PRO B 914 0 1.62 CRYST1 68.700 126.800 184.000 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014556 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005435 0.00000