PDB Short entry for 2Y1L HEADER HYDROLASE/INHIBITOR 08-DEC-10 2Y1L TITLE CASPASE-8 IN COMPLEX WITH DARPIN-8.4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-8; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: P18 SUBUNIT, RESIDUES 218-374; COMPND 5 SYNONYM: CASP-8, APOPTOTIC CYSTEINE PROTEASE, APOPTOTIC PROTEASE MCH- COMPND 6 CAP4, FADD-HOMOLOGOUS ICE/CED-3-LIKE PROTEASE, FADD-LIKE ICE, FLICE, COMPND 7 ICE-LIKE APOPTOTIC PROTEASE 5, MORT1-ASSOCIATED CED-3 HOMOLOG, MACH; COMPND 8 EC: 3.4.22.61; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CASPASE-8; COMPND 12 CHAIN: B, D; COMPND 13 FRAGMENT: P10 SUBUNIT, RESIDUES 376-479; COMPND 14 SYNONYM: CASP-8, APOPTOTIC CYSTEINE PROTEASE, APOPTOTIC PROTEASE MCH- COMPND 15 CAP4, FADD-HOMOLOGOUS ICE/CED-3-LIKE PROTEASE, FADD-LIKE ICE, FLICE, COMPND 16 ICE-LIKE APOPTOTIC PROTEASE 5, MORT1-ASSOCIATED CED-3 HOMOLOG, MACH; COMPND 17 EC: 3.4.22.61; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 3; COMPND 20 MOLECULE: DARPIN-8.4; COMPND 21 CHAIN: E, F; COMPND 22 FRAGMENT: N3C, RESIDUES 1-169; COMPND 23 ENGINEERED: YES; COMPND 24 OTHER_DETAILS: IN-VITRO EVOLVED SEQUENCE; COMPND 25 MOL_ID: 4; COMPND 26 MOLECULE: AC-IETD-CHO; COMPND 27 CHAIN: G, H; COMPND 28 FRAGMENT: AC-IETD-CHO INHIBITOR, RESIDUES 1-4; COMPND 29 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET11D; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET11D; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 25 EXPRESSION_SYSTEM_VARIANT: XL1BLUE; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_VECTOR: PQE30; SOURCE 28 MOL_ID: 4; SOURCE 29 SYNTHETIC: YES; SOURCE 30 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 31 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE-INHIBITOR COMPLEX, DEVD DARPIN, ANKYRIN REPEAT PROTEIN, KEYWDS 2 RIBOSOME DISPLAY, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR J.BARANDUN,T.SCHROEDER,P.R.E.MITTL,M.G.GRUTTER REVDAT 5 20-DEC-23 2Y1L 1 REMARK REVDAT 4 12-MAR-14 2Y1L 1 SOURCE REVDAT 3 03-OCT-12 2Y1L 1 REMARK REVDAT 2 11-APR-12 2Y1L 1 SHEET REVDAT 1 28-DEC-11 2Y1L 0 JRNL AUTH T.SCHROEDER,J.BARANDUN,M.G.GRUTTER JRNL TITL CASPASE-8 IN COMPLEX WITH DARPIN-8.4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 75836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8754 - 3.8774 0.99 7489 430 0.1729 0.1937 REMARK 3 2 3.8774 - 3.0778 0.99 7272 383 0.1686 0.2000 REMARK 3 3 3.0778 - 2.6887 1.00 7274 360 0.1734 0.2165 REMARK 3 4 2.6887 - 2.4429 1.00 7203 388 0.1696 0.2045 REMARK 3 5 2.4429 - 2.2678 1.00 7178 359 0.1734 0.2226 REMARK 3 6 2.2678 - 2.1341 0.99 7168 412 0.1788 0.2364 REMARK 3 7 2.1341 - 2.0272 0.99 7101 384 0.1897 0.2394 REMARK 3 8 2.0272 - 1.9390 0.99 7175 344 0.1975 0.2462 REMARK 3 9 1.9390 - 1.8643 0.99 7115 387 0.2179 0.2660 REMARK 3 10 1.8643 - 1.8000 0.99 7049 365 0.2536 0.3079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 27.64 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08100 REMARK 3 B22 (A**2) : -0.28740 REMARK 3 B33 (A**2) : 0.36850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6391 REMARK 3 ANGLE : 1.201 8639 REMARK 3 CHIRALITY : 0.061 965 REMARK 3 PLANARITY : 0.004 1132 REMARK 3 DIHEDRAL : 13.001 2382 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 30 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 222:231) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1337 -0.1054 -18.5611 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.0702 REMARK 3 T33: 0.1106 T12: 0.0112 REMARK 3 T13: 0.0230 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.8997 L22: 2.5038 REMARK 3 L33: 1.4315 L12: -0.3856 REMARK 3 L13: 0.5501 L23: -1.3660 REMARK 3 S TENSOR REMARK 3 S11: 0.1396 S12: -0.0259 S13: -0.2772 REMARK 3 S21: -0.4100 S22: -0.1111 S23: 0.0814 REMARK 3 S31: 0.2709 S32: 0.0616 S33: -0.0218 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 232:247) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7128 25.5246 -13.3930 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.0571 REMARK 3 T33: 0.0438 T12: 0.0072 REMARK 3 T13: 0.0182 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.1865 L22: 1.7005 REMARK 3 L33: 0.1519 L12: 0.3399 REMARK 3 L13: -0.1770 L23: -0.7657 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: -0.0149 S13: -0.0134 REMARK 3 S21: 0.2761 S22: -0.0790 S23: -0.0117 REMARK 3 S31: -0.0443 S32: 0.0252 S33: 0.0223 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 248:284) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1801 26.8476 -16.4851 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.0967 REMARK 3 T33: 0.0920 T12: 0.0162 REMARK 3 T13: 0.0222 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.4696 L22: 0.2970 REMARK 3 L33: 0.5296 L12: 0.2229 REMARK 3 L13: -0.0466 L23: -0.2328 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.0236 S13: 0.0664 REMARK 3 S21: 0.1079 S22: 0.0119 S23: 0.1295 REMARK 3 S31: -0.0726 S32: -0.0162 S33: -0.0250 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 285:335) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1866 23.5717 -14.8853 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.0742 REMARK 3 T33: 0.0634 T12: 0.0005 REMARK 3 T13: 0.0090 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.4326 L22: 1.2039 REMARK 3 L33: 0.9848 L12: 0.0133 REMARK 3 L13: 0.0683 L23: -0.1212 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.0258 S13: 0.0067 REMARK 3 S21: 0.1233 S22: -0.0495 S23: -0.0847 REMARK 3 S31: -0.0744 S32: 0.1161 S33: 0.0309 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 336:371) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3751 19.4943 -24.4428 REMARK 3 T TENSOR REMARK 3 T11: 0.0513 T22: 0.0648 REMARK 3 T33: 0.0615 T12: -0.0123 REMARK 3 T13: 0.0197 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3752 L22: 0.4641 REMARK 3 L33: 0.5109 L12: -0.2031 REMARK 3 L13: 0.0136 L23: 0.1795 REMARK 3 S TENSOR REMARK 3 S11: -0.0565 S12: 0.0533 S13: 0.0271 REMARK 3 S21: 0.0840 S22: 0.0474 S23: 0.0363 REMARK 3 S31: -0.0403 S32: 0.0961 S33: 0.0157 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 392:407) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1154 14.1596 -25.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.1065 T22: 0.1123 REMARK 3 T33: 0.1004 T12: 0.0016 REMARK 3 T13: -0.0036 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.0539 L22: 1.8677 REMARK 3 L33: 2.0103 L12: -0.1921 REMARK 3 L13: 0.2401 L23: -1.5013 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: 0.0809 S13: 0.1046 REMARK 3 S21: 0.0955 S22: -0.1536 S23: -0.2837 REMARK 3 S31: -0.1125 S32: 0.3516 S33: 0.1169 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 408:429) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8858 23.7881 -26.8754 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.1544 REMARK 3 T33: 0.1035 T12: 0.0104 REMARK 3 T13: 0.0147 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.4589 L22: 1.6852 REMARK 3 L33: 0.2960 L12: 0.5517 REMARK 3 L13: -0.0051 L23: 0.2956 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: 0.1205 S13: 0.0738 REMARK 3 S21: -0.0940 S22: 0.0386 S23: 0.1372 REMARK 3 S31: -0.0275 S32: -0.0346 S33: -0.0080 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 430:440) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4408 6.8276 -25.6358 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.1689 REMARK 3 T33: 0.1843 T12: -0.0369 REMARK 3 T13: 0.0087 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.0535 L22: 5.9702 REMARK 3 L33: 4.4736 L12: 4.1968 REMARK 3 L13: -0.1248 L23: -1.0084 REMARK 3 S TENSOR REMARK 3 S11: -0.2058 S12: 0.3248 S13: 0.5719 REMARK 3 S21: -0.3506 S22: 0.2204 S23: 0.6854 REMARK 3 S31: 0.4110 S32: -0.6511 S33: -0.0027 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 441:460) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2400 21.5377 -35.1570 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1645 REMARK 3 T33: 0.1318 T12: 0.0262 REMARK 3 T13: -0.0104 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.3759 L22: 1.5092 REMARK 3 L33: 0.6139 L12: 0.1859 REMARK 3 L13: -0.1632 L23: 0.1091 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: 0.1836 S13: 0.0613 REMARK 3 S21: -0.2177 S22: -0.0160 S23: 0.2369 REMARK 3 S31: 0.0034 S32: -0.2199 S33: 0.0108 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 461:478) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5868 10.9469 -27.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.1212 REMARK 3 T33: 0.0855 T12: 0.0011 REMARK 3 T13: 0.0214 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.3230 L22: 0.1142 REMARK 3 L33: 0.7717 L12: -0.3246 REMARK 3 L13: -0.0897 L23: 0.2823 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.0551 S13: 0.0060 REMARK 3 S21: 0.0032 S22: 0.0328 S23: -0.0264 REMARK 3 S31: 0.1363 S32: -0.0662 S33: 0.0485 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN C AND RESID 223:235) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3084 5.9003 -48.4504 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.1249 REMARK 3 T33: 0.1215 T12: -0.0245 REMARK 3 T13: 0.0036 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.6653 L22: 1.0361 REMARK 3 L33: 3.4970 L12: -0.7161 REMARK 3 L13: -1.2669 L23: 1.5878 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: 0.1621 S13: -0.1211 REMARK 3 S21: 0.0232 S22: -0.1784 S23: 0.1887 REMARK 3 S31: -0.0426 S32: -0.3319 S33: 0.1879 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 236:260) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3317 14.6268 -45.3473 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.1601 REMARK 3 T33: 0.1603 T12: -0.0156 REMARK 3 T13: -0.0116 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 0.2556 L22: 1.4595 REMARK 3 L33: 0.8949 L12: -0.4545 REMARK 3 L13: -0.0857 L23: -0.0650 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: -0.1023 S13: 0.1764 REMARK 3 S21: 0.0498 S22: 0.0312 S23: -0.3229 REMARK 3 S31: -0.0172 S32: 0.2737 S33: 0.0313 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN C AND RESID 261:284) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5204 2.1908 -49.4491 REMARK 3 T TENSOR REMARK 3 T11: 0.1136 T22: 0.1066 REMARK 3 T33: 0.1042 T12: 0.0183 REMARK 3 T13: 0.0165 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.4788 L22: 0.9873 REMARK 3 L33: 0.8465 L12: -0.6698 REMARK 3 L13: 0.2040 L23: -0.0856 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.1823 S13: -0.1230 REMARK 3 S21: -0.0591 S22: -0.0131 S23: -0.0482 REMARK 3 S31: 0.1489 S32: 0.1233 S33: -0.0288 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 285:334) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4799 17.1653 -48.6486 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.0597 REMARK 3 T33: 0.0819 T12: -0.0094 REMARK 3 T13: 0.0046 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.4213 L22: 0.3615 REMARK 3 L33: 0.7801 L12: -0.1309 REMARK 3 L13: -0.2776 L23: -0.0922 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -0.0028 S13: 0.1891 REMARK 3 S21: -0.0680 S22: 0.0044 S23: -0.0371 REMARK 3 S31: -0.0958 S32: 0.0556 S33: -0.0209 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN C AND RESID 335:370) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1944 15.6590 -39.7892 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0853 REMARK 3 T33: 0.0812 T12: 0.0027 REMARK 3 T13: 0.0100 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.3440 L22: 1.0844 REMARK 3 L33: 1.0214 L12: -0.7613 REMARK 3 L13: -0.3900 L23: -0.0346 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: -0.1666 S13: 0.1467 REMARK 3 S21: -0.0241 S22: 0.0087 S23: -0.1546 REMARK 3 S31: 0.0045 S32: 0.1381 S33: -0.1172 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN D AND RESID 390:402) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9061 19.3569 -42.1983 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.1203 REMARK 3 T33: 0.1082 T12: 0.0088 REMARK 3 T13: -0.0157 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.3582 L22: 1.6614 REMARK 3 L33: 1.5489 L12: -0.4233 REMARK 3 L13: -1.9397 L23: 0.1788 REMARK 3 S TENSOR REMARK 3 S11: -0.0915 S12: 0.2921 S13: 0.2293 REMARK 3 S21: 0.1919 S22: 0.0499 S23: 0.1500 REMARK 3 S31: -0.0004 S32: -0.3299 S33: 0.0472 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN D AND RESID 403:429) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2244 4.8169 -35.8904 REMARK 3 T TENSOR REMARK 3 T11: 0.1427 T22: 0.1585 REMARK 3 T33: 0.1234 T12: 0.0267 REMARK 3 T13: -0.0003 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.5465 L22: 0.9023 REMARK 3 L33: 0.9170 L12: -0.4578 REMARK 3 L13: -0.5019 L23: 0.5650 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.2122 S13: 0.0595 REMARK 3 S21: 0.0078 S22: 0.0721 S23: -0.1659 REMARK 3 S31: 0.0796 S32: 0.1771 S33: -0.0417 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN D AND RESID 430:440) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1439 -2.4040 -38.0222 REMARK 3 T TENSOR REMARK 3 T11: 0.1666 T22: 0.1118 REMARK 3 T33: 0.1852 T12: -0.0142 REMARK 3 T13: -0.0022 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.6607 L22: 0.0943 REMARK 3 L33: 1.8344 L12: 0.4623 REMARK 3 L13: 0.5616 L23: 0.0220 REMARK 3 S TENSOR REMARK 3 S11: 0.0593 S12: -0.1693 S13: -0.4296 REMARK 3 S21: 0.3571 S22: 0.1741 S23: -0.3500 REMARK 3 S31: 0.3370 S32: -0.0341 S33: -0.1829 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN D AND RESID 441:464) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6589 2.7696 -28.4232 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.1950 REMARK 3 T33: 0.1312 T12: 0.0616 REMARK 3 T13: 0.0045 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.2056 L22: 2.4604 REMARK 3 L33: 2.9964 L12: -0.3082 REMARK 3 L13: 0.3059 L23: -0.3474 REMARK 3 S TENSOR REMARK 3 S11: -0.1303 S12: -0.0632 S13: -0.0303 REMARK 3 S21: 0.0151 S22: 0.0666 S23: -0.3072 REMARK 3 S31: 0.0732 S32: 0.5121 S33: 0.0643 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN D AND RESID 465:479) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1506 7.9773 -39.6595 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.0801 REMARK 3 T33: 0.0664 T12: 0.0142 REMARK 3 T13: 0.0171 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.7036 L22: 0.1667 REMARK 3 L33: 1.1793 L12: 0.0609 REMARK 3 L13: 0.0974 L23: -0.2637 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: 0.0007 S13: -0.0463 REMARK 3 S21: 0.0916 S22: 0.0799 S23: -0.0080 REMARK 3 S31: 0.0637 S32: -0.0441 S33: 0.0168 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN E AND RESID 13:34) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2697 6.5587 -68.8792 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.1497 REMARK 3 T33: 0.2448 T12: 0.0021 REMARK 3 T13: -0.0488 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 2.1018 L22: 2.6272 REMARK 3 L33: 2.6005 L12: -0.6655 REMARK 3 L13: 1.7083 L23: 0.7160 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: -0.0984 S13: -0.5417 REMARK 3 S21: -0.0398 S22: -0.1285 S23: 0.7067 REMARK 3 S31: 0.1245 S32: -0.2959 S33: 0.0706 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN E AND RESID 35:89) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1104 15.5202 -69.7497 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.1095 REMARK 3 T33: 0.0763 T12: 0.0206 REMARK 3 T13: -0.0240 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.9028 L22: 1.3799 REMARK 3 L33: 0.2502 L12: -0.2631 REMARK 3 L13: -0.2258 L23: 0.2761 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.1839 S13: -0.0240 REMARK 3 S21: -0.3308 S22: -0.0191 S23: 0.0337 REMARK 3 S31: -0.1114 S32: -0.0338 S33: -0.0134 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN E AND RESID 90:135) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4134 19.3893 -69.0508 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.0802 REMARK 3 T33: 0.1143 T12: -0.0085 REMARK 3 T13: 0.0754 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.7229 L22: 0.8638 REMARK 3 L33: 1.2303 L12: 0.6451 REMARK 3 L13: -0.3019 L23: -0.2614 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.1302 S13: -0.0104 REMARK 3 S21: -0.2482 S22: -0.0257 S23: -0.1841 REMARK 3 S31: -0.0862 S32: 0.0142 S33: -0.0318 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN E AND RESID 136:156) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2641 29.2079 -63.1277 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.0564 REMARK 3 T33: 0.2968 T12: -0.0596 REMARK 3 T13: 0.0730 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.3838 L22: 0.4713 REMARK 3 L33: 3.2255 L12: -0.7155 REMARK 3 L13: 0.4048 L23: -0.3097 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: -0.0770 S13: 0.3559 REMARK 3 S21: -0.0766 S22: 0.1123 S23: -0.6926 REMARK 3 S31: -0.7339 S32: 0.2157 S33: -0.1374 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: (CHAIN E AND RESID 157:168) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6324 21.7990 -64.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.6259 REMARK 3 T33: 0.7015 T12: 0.0465 REMARK 3 T13: 0.0490 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.0646 L22: 2.7605 REMARK 3 L33: 3.2423 L12: 0.1659 REMARK 3 L13: 0.3591 L23: 1.2156 REMARK 3 S TENSOR REMARK 3 S11: 0.1269 S12: 0.4480 S13: 0.7041 REMARK 3 S21: 0.1589 S22: 0.2451 S23: -1.6054 REMARK 3 S31: 0.0609 S32: 1.5602 S33: -0.2757 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: (CHAIN F AND RESID 13:33) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9048 5.1946 5.9277 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.1533 REMARK 3 T33: 0.2816 T12: -0.0877 REMARK 3 T13: -0.0819 T23: 0.1075 REMARK 3 L TENSOR REMARK 3 L11: 3.2205 L22: 3.8271 REMARK 3 L33: 3.0111 L12: 0.3766 REMARK 3 L13: -1.0718 L23: -2.0159 REMARK 3 S TENSOR REMARK 3 S11: -0.1819 S12: -0.2803 S13: -0.5667 REMARK 3 S21: -0.4966 S22: 0.1718 S23: 0.5976 REMARK 3 S31: 0.4314 S32: -0.2251 S33: -0.0732 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: (CHAIN F AND RESID 34:46) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7893 6.1552 8.2481 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1676 REMARK 3 T33: 0.1853 T12: -0.0001 REMARK 3 T13: -0.0408 T23: 0.0940 REMARK 3 L TENSOR REMARK 3 L11: 0.1255 L22: 0.6900 REMARK 3 L33: 1.0955 L12: -0.0876 REMARK 3 L13: 0.0685 L23: -0.8050 REMARK 3 S TENSOR REMARK 3 S11: 0.1254 S12: -0.2018 S13: -0.3038 REMARK 3 S21: -0.2058 S22: 0.0061 S23: 0.1054 REMARK 3 S31: 0.4247 S32: 0.0869 S33: -0.1100 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: (CHAIN F AND RESID 47:88) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7931 16.6570 6.3324 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.1242 REMARK 3 T33: 0.0825 T12: -0.0138 REMARK 3 T13: -0.0081 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.6601 L22: 0.7877 REMARK 3 L33: 1.6224 L12: 0.1066 REMARK 3 L13: 0.2967 L23: 0.0174 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.1866 S13: -0.0065 REMARK 3 S21: 0.0102 S22: 0.0193 S23: 0.0906 REMARK 3 S31: 0.0721 S32: 0.0479 S33: -0.0423 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: (CHAIN F AND RESID 89:154) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0998 31.4321 3.9108 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.0962 REMARK 3 T33: 0.0670 T12: -0.0111 REMARK 3 T13: 0.0008 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.0531 L22: 1.8155 REMARK 3 L33: 1.4828 L12: 0.5868 REMARK 3 L13: 0.5568 L23: -0.8170 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.1011 S13: 0.0358 REMARK 3 S21: 0.1218 S22: -0.0656 S23: -0.0386 REMARK 3 S31: -0.2136 S32: 0.0945 S33: 0.0731 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: (CHAIN F AND RESID 155:168) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8047 42.6698 -0.5667 REMARK 3 T TENSOR REMARK 3 T11: 0.4516 T22: 0.1635 REMARK 3 T33: 0.2393 T12: 0.0465 REMARK 3 T13: -0.0352 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.3942 L22: 0.4346 REMARK 3 L33: 4.8906 L12: -0.1898 REMARK 3 L13: 1.2808 L23: -1.3889 REMARK 3 S TENSOR REMARK 3 S11: -0.1841 S12: -0.0473 S13: 0.4676 REMARK 3 S21: -0.0140 S22: -0.1515 S23: 0.1189 REMARK 3 S31: -1.5606 S32: -0.1594 S33: 0.2593 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RAMACHANDRAN OUTLIERS LYS A 320, LYS C REMARK 3 229 ARE IN CLOSE PROXIMITY TO CRYSTAL CONTACTS OR DARPIN BINDING REMARK 3 SITE. ELECTRON DENSITY WELL RESOLVED. ASN B 408, MET C 228, ASN REMARK 3 D 408 ARE ALSO PRESENT IN HIGH RESOLUTION CASPASE-8 STRUCTURES REMARK 3 SUCH AS 1QTN, 3KJN, 3KJQ. REMARK 4 REMARK 4 2Y1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1290046625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.760 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.88 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1QDU AND 2QYJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CITRIC ACID PH 4.9 (RT), 200 MM REMARK 280 LI2SO4, 22.5% PEG 4K., PH 4.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 216 REMARK 465 GLY A 217 REMARK 465 GLU A 218 REMARK 465 SER A 219 REMARK 465 GLN A 220 REMARK 465 THR A 221 REMARK 465 GLU A 372 REMARK 465 THR A 373 REMARK 465 ASP A 374 REMARK 465 GLU B 376 REMARK 465 GLU B 377 REMARK 465 GLN B 378 REMARK 465 PRO B 379 REMARK 465 TYR B 380 REMARK 465 LEU B 381 REMARK 465 GLU B 382 REMARK 465 MET B 383 REMARK 465 ASP B 384 REMARK 465 LEU B 385 REMARK 465 SER B 386 REMARK 465 SER B 387 REMARK 465 PRO B 388 REMARK 465 GLN B 389 REMARK 465 THR B 390 REMARK 465 ARG B 391 REMARK 465 ASP B 479 REMARK 465 MET C 216 REMARK 465 GLY C 217 REMARK 465 GLU C 218 REMARK 465 SER C 219 REMARK 465 GLN C 220 REMARK 465 THR C 221 REMARK 465 LEU C 222 REMARK 465 VAL C 371 REMARK 465 GLU C 372 REMARK 465 THR C 373 REMARK 465 ASP C 374 REMARK 465 GLU D 376 REMARK 465 GLU D 377 REMARK 465 GLN D 378 REMARK 465 PRO D 379 REMARK 465 TYR D 380 REMARK 465 LEU D 381 REMARK 465 GLU D 382 REMARK 465 MET D 383 REMARK 465 ASP D 384 REMARK 465 LEU D 385 REMARK 465 SER D 386 REMARK 465 SER D 387 REMARK 465 PRO D 388 REMARK 465 GLN D 389 REMARK 465 MET E 1 REMARK 465 ARG E 2 REMARK 465 GLY E 3 REMARK 465 SER E 4 REMARK 465 HIS E 5 REMARK 465 HIS E 6 REMARK 465 HIS E 7 REMARK 465 HIS E 8 REMARK 465 HIS E 9 REMARK 465 HIS E 10 REMARK 465 GLY E 11 REMARK 465 SER E 12 REMARK 465 ASN E 169 REMARK 465 MET F 1 REMARK 465 ARG F 2 REMARK 465 GLY F 3 REMARK 465 SER F 4 REMARK 465 HIS F 5 REMARK 465 HIS F 6 REMARK 465 HIS F 7 REMARK 465 HIS F 8 REMARK 465 HIS F 9 REMARK 465 HIS F 10 REMARK 465 GLY F 11 REMARK 465 SER F 12 REMARK 465 ASN F 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 320 109.23 -46.77 REMARK 500 ASN B 408 -9.54 77.10 REMARK 500 MET C 228 75.77 -151.72 REMARK 500 LYS C 229 -9.44 -146.47 REMARK 500 ASN D 408 -5.51 79.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2091 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH E2126 DISTANCE = 6.41 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1479 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 1480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E 1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 1170 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QDU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF CASPASE -8 WITH THE TRIPEPTIDE REMARK 900 KETONE INHIBITOR ZEVD-DCBMK REMARK 900 RELATED ID: 1F9E RELATED DB: PDB REMARK 900 CASPASE-8 SPECIFICITY PROBED AT SUBSITE S4 : CRYSTALSTRUCTURE OF REMARK 900 THE CASPASE-8-Z-DEVD -CHO REMARK 900 RELATED ID: 2C2Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CASPASE-8 IN COMPLEX WITH AZA-PEPTIDE MICHAEL REMARK 900 ACCEPTOR INHIBITOR REMARK 900 RELATED ID: 2FUN RELATED DB: PDB REMARK 900 ALTERNATIVE P35-CASPASE-8 COMPLEX REMARK 900 RELATED ID: 1QTN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF CASPASE -8 WITH THE REMARK 900 TETRAPEPTIDE INHIBITOR ACE-IETD -ALDEHYDE REMARK 900 RELATED ID: 1I4E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CASPASE-8/P35 COMPLEX DBREF 2Y1L A 218 374 UNP Q14790 CASP8_HUMAN 218 374 DBREF 2Y1L B 376 479 UNP Q14790 CASP8_HUMAN 376 479 DBREF 2Y1L C 218 374 UNP Q14790 CASP8_HUMAN 218 374 DBREF 2Y1L D 376 479 UNP Q14790 CASP8_HUMAN 376 479 DBREF 2Y1L E 1 169 PDB 2Y1L 2Y1L 1 169 DBREF 2Y1L F 1 169 PDB 2Y1L 2Y1L 1 169 DBREF 2Y1L G 1 4 PDB 2Y1L 2Y1L 1 4 DBREF 2Y1L H 1 4 PDB 2Y1L 2Y1L 1 4 SEQADV 2Y1L MET A 216 UNP Q14790 EXPRESSION TAG SEQADV 2Y1L GLY A 217 UNP Q14790 EXPRESSION TAG SEQADV 2Y1L MET C 216 UNP Q14790 EXPRESSION TAG SEQADV 2Y1L GLY C 217 UNP Q14790 EXPRESSION TAG SEQRES 1 A 159 MET GLY GLU SER GLN THR LEU ASP LYS VAL TYR GLN MET SEQRES 2 A 159 LYS SER LYS PRO ARG GLY TYR CYS LEU ILE ILE ASN ASN SEQRES 3 A 159 HIS ASN PHE ALA LYS ALA ARG GLU LYS VAL PRO LYS LEU SEQRES 4 A 159 HIS SER ILE ARG ASP ARG ASN GLY THR HIS LEU ASP ALA SEQRES 5 A 159 GLY ALA LEU THR THR THR PHE GLU GLU LEU HIS PHE GLU SEQRES 6 A 159 ILE LYS PRO HIS ASP ASP CYS THR VAL GLU GLN ILE TYR SEQRES 7 A 159 GLU ILE LEU LYS ILE TYR GLN LEU MET ASP HIS SER ASN SEQRES 8 A 159 MET ASP CYS PHE ILE CYS CYS ILE LEU SER HIS GLY ASP SEQRES 9 A 159 LYS GLY ILE ILE TYR GLY THR ASP GLY GLN GLU ALA PRO SEQRES 10 A 159 ILE TYR GLU LEU THR SER GLN PHE THR GLY LEU LYS CYS SEQRES 11 A 159 PRO SER LEU ALA GLY LYS PRO LYS VAL PHE PHE ILE GLN SEQRES 12 A 159 ALA CYS GLN GLY ASP ASN TYR GLN LYS GLY ILE PRO VAL SEQRES 13 A 159 GLU THR ASP SEQRES 1 B 104 GLU GLU GLN PRO TYR LEU GLU MET ASP LEU SER SER PRO SEQRES 2 B 104 GLN THR ARG TYR ILE PRO ASP GLU ALA ASP PHE LEU LEU SEQRES 3 B 104 GLY MET ALA THR VAL ASN ASN CYS VAL SER TYR ARG ASN SEQRES 4 B 104 PRO ALA GLU GLY THR TRP TYR ILE GLN SER LEU CYS GLN SEQRES 5 B 104 SER LEU ARG GLU ARG CYS PRO ARG GLY ASP ASP ILE LEU SEQRES 6 B 104 THR ILE LEU THR GLU VAL ASN TYR GLU VAL SER ASN LYS SEQRES 7 B 104 ASP ASP LYS LYS ASN MET GLY LYS GLN MET PRO GLN PRO SEQRES 8 B 104 THR PHE THR LEU ARG LYS LYS LEU VAL PHE PRO SER ASP SEQRES 1 C 159 MET GLY GLU SER GLN THR LEU ASP LYS VAL TYR GLN MET SEQRES 2 C 159 LYS SER LYS PRO ARG GLY TYR CYS LEU ILE ILE ASN ASN SEQRES 3 C 159 HIS ASN PHE ALA LYS ALA ARG GLU LYS VAL PRO LYS LEU SEQRES 4 C 159 HIS SER ILE ARG ASP ARG ASN GLY THR HIS LEU ASP ALA SEQRES 5 C 159 GLY ALA LEU THR THR THR PHE GLU GLU LEU HIS PHE GLU SEQRES 6 C 159 ILE LYS PRO HIS ASP ASP CYS THR VAL GLU GLN ILE TYR SEQRES 7 C 159 GLU ILE LEU LYS ILE TYR GLN LEU MET ASP HIS SER ASN SEQRES 8 C 159 MET ASP CYS PHE ILE CYS CYS ILE LEU SER HIS GLY ASP SEQRES 9 C 159 LYS GLY ILE ILE TYR GLY THR ASP GLY GLN GLU ALA PRO SEQRES 10 C 159 ILE TYR GLU LEU THR SER GLN PHE THR GLY LEU LYS CYS SEQRES 11 C 159 PRO SER LEU ALA GLY LYS PRO LYS VAL PHE PHE ILE GLN SEQRES 12 C 159 ALA CYS GLN GLY ASP ASN TYR GLN LYS GLY ILE PRO VAL SEQRES 13 C 159 GLU THR ASP SEQRES 1 D 104 GLU GLU GLN PRO TYR LEU GLU MET ASP LEU SER SER PRO SEQRES 2 D 104 GLN THR ARG TYR ILE PRO ASP GLU ALA ASP PHE LEU LEU SEQRES 3 D 104 GLY MET ALA THR VAL ASN ASN CYS VAL SER TYR ARG ASN SEQRES 4 D 104 PRO ALA GLU GLY THR TRP TYR ILE GLN SER LEU CYS GLN SEQRES 5 D 104 SER LEU ARG GLU ARG CYS PRO ARG GLY ASP ASP ILE LEU SEQRES 6 D 104 THR ILE LEU THR GLU VAL ASN TYR GLU VAL SER ASN LYS SEQRES 7 D 104 ASP ASP LYS LYS ASN MET GLY LYS GLN MET PRO GLN PRO SEQRES 8 D 104 THR PHE THR LEU ARG LYS LYS LEU VAL PHE PRO SER ASP SEQRES 1 E 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 E 169 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY ARG SEQRES 3 E 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 E 169 VAL ASN ALA GLU ASP ALA SER GLY TRP THR PRO LEU HIS SEQRES 5 E 169 LEU ALA ALA PHE ASN GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 6 E 169 LEU LEU LYS ASN GLY ALA ASP VAL ASN ALA VAL ASP HIS SEQRES 7 E 169 ALA GLY MET THR PRO LEU ARG LEU ALA ALA LEU PHE GLY SEQRES 8 E 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS ASN GLY ALA SEQRES 9 E 169 ASP VAL ASN ALA ASN ASP MET GLU GLY HIS THR PRO LEU SEQRES 10 E 169 HIS LEU ALA ALA MET PHE GLY HIS LEU GLU ILE VAL GLU SEQRES 11 E 169 VAL LEU LEU LYS ASN GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 E 169 LYS PHE GLY LYS THR ALA PHE ASP ILE SER ILE ASP ASN SEQRES 13 E 169 GLY ASN GLU ASP LEU ALA GLU ILE LEU GLN LYS LEU ASN SEQRES 1 F 169 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 F 169 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY ARG SEQRES 3 F 169 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 4 F 169 VAL ASN ALA GLU ASP ALA SER GLY TRP THR PRO LEU HIS SEQRES 5 F 169 LEU ALA ALA PHE ASN GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 6 F 169 LEU LEU LYS ASN GLY ALA ASP VAL ASN ALA VAL ASP HIS SEQRES 7 F 169 ALA GLY MET THR PRO LEU ARG LEU ALA ALA LEU PHE GLY SEQRES 8 F 169 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS ASN GLY ALA SEQRES 9 F 169 ASP VAL ASN ALA ASN ASP MET GLU GLY HIS THR PRO LEU SEQRES 10 F 169 HIS LEU ALA ALA MET PHE GLY HIS LEU GLU ILE VAL GLU SEQRES 11 F 169 VAL LEU LEU LYS ASN GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 12 F 169 LYS PHE GLY LYS THR ALA PHE ASP ILE SER ILE ASP ASN SEQRES 13 F 169 GLY ASN GLU ASP LEU ALA GLU ILE LEU GLN LYS LEU ASN SEQRES 1 G 4 ILE GLU THR ASP SEQRES 1 H 4 ILE GLU THR ASP HET SO4 A1372 5 HET EDO B1479 4 HET SO4 B1480 5 HET SO4 C1371 5 HET EDO D1480 4 HET EDO E1169 4 HET EDO F1169 4 HET EDO F1170 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 9 SO4 3(O4 S 2-) FORMUL 10 EDO 5(C2 H6 O2) FORMUL 17 HOH *685(H2 O) HELIX 1 1 PHE A 244 VAL A 251 1 8 HELIX 2 2 PRO A 252 HIS A 255 5 4 HELIX 3 3 GLY A 262 LEU A 277 1 16 HELIX 4 4 THR A 288 MET A 302 1 15 HELIX 5 5 ILE A 333 SER A 338 1 6 HELIX 6 6 GLN A 339 THR A 341 5 3 HELIX 7 7 CYS A 345 ALA A 349 5 5 HELIX 8 8 TRP B 420 CYS B 433 1 14 HELIX 9 9 PRO B 434 GLY B 436 5 3 HELIX 10 10 ASP B 438 ASN B 452 1 15 HELIX 11 11 LYS B 456 ASN B 458 5 3 HELIX 12 12 PHE C 244 VAL C 251 1 8 HELIX 13 13 PRO C 252 HIS C 255 5 4 HELIX 14 14 GLY C 262 LEU C 277 1 16 HELIX 15 15 THR C 288 MET C 302 1 15 HELIX 16 16 ILE C 333 SER C 338 1 6 HELIX 17 17 GLN C 339 THR C 341 5 3 HELIX 18 18 CYS C 345 ALA C 349 5 5 HELIX 19 19 TRP D 420 CYS D 433 1 14 HELIX 20 20 PRO D 434 GLY D 436 5 3 HELIX 21 21 ASP D 438 LYS D 453 1 16 HELIX 22 22 LYS D 456 ASN D 458 5 3 HELIX 23 23 ASP E 13 GLY E 25 1 13 HELIX 24 24 ARG E 26 ASN E 36 1 11 HELIX 25 25 THR E 49 ASN E 57 1 9 HELIX 26 26 HIS E 59 ASN E 69 1 11 HELIX 27 27 THR E 82 PHE E 90 1 9 HELIX 28 28 HIS E 92 ASN E 102 1 11 HELIX 29 29 THR E 115 PHE E 123 1 9 HELIX 30 30 HIS E 125 ASN E 135 1 11 HELIX 31 31 THR E 148 ASN E 156 1 9 HELIX 32 32 ASN E 158 LYS E 167 1 10 HELIX 33 33 ASP F 13 GLY F 25 1 13 HELIX 34 34 ARG F 26 ASN F 36 1 11 HELIX 35 35 THR F 49 GLY F 58 1 10 HELIX 36 36 HIS F 59 ASN F 69 1 11 HELIX 37 37 THR F 82 PHE F 90 1 9 HELIX 38 38 HIS F 92 ASN F 102 1 11 HELIX 39 39 THR F 115 PHE F 123 1 9 HELIX 40 40 HIS F 125 ASN F 135 1 11 HELIX 41 41 THR F 148 ASN F 156 1 9 HELIX 42 42 ASN F 158 LYS F 167 1 10 SHEET 1 1 1 GLY A 234 ASN A 240 0 SHEET 1 2 1 PHE A 279 ASP A 285 0 SHEET 1 3 1 CYS A 309 LEU A 315 0 SHEET 1 4 1 GLY A 318 ASP A 319 0 SHEET 1 5 1 ILE A 322 TYR A 324 0 SHEET 1 6 1 GLU A 330 PRO A 332 0 SHEET 1 7 1 LYS A 353 GLN A 358 0 SHEET 1 8 1 GLN A 366 PRO A 370 0 SHEET 1 9 1 ILE B 393 PRO B 394 0 SHEET 1 10 1 PHE B 399 MET B 403 0 SHEET 1 11 1 TYR B 412 ASN B 414 0 SHEET 1 12 1 GLY B 418 THR B 419 0 SHEET 1 13 1 GLY B 460 LYS B 461 0 SHEET 1 14 1 GLN B 465 PHE B 468 0 SHEET 1 15 1 GLY C 234 ASN C 240 0 SHEET 1 16 1 GLU C 280 ASP C 285 0 SHEET 1 17 1 CYS C 309 LEU C 315 0 SHEET 1 18 1 GLY C 318 ASP C 319 0 SHEET 1 19 1 ILE C 322 TYR C 324 0 SHEET 1 20 1 GLU C 330 PRO C 332 0 SHEET 1 21 1 LYS C 353 GLN C 358 0 SHEET 1 22 1 GLN C 366 ILE C 369 0 SHEET 1 23 1 TYR D 392 PRO D 394 0 SHEET 1 24 1 PHE D 399 MET D 403 0 SHEET 1 25 1 TYR D 412 ASN D 414 0 SHEET 1 26 1 GLY D 418 THR D 419 0 SHEET 1 27 1 GLY D 460 LYS D 461 0 SHEET 1 28 1 GLN D 465 PHE D 468 0 SHEET 1 29 1 GLU G 2 THR G 3 0 SHEET 1 30 1 GLU H 2 THR H 3 0 CISPEP 1 LYS A 231 PRO A 232 0 -0.51 CISPEP 2 LYS C 231 PRO C 232 0 2.82 SITE 1 AC1 8 HIS A 242 ASN A 261 GLY A 262 THR A 263 SITE 2 AC1 8 HIS A 264 HOH A2160 HOH A2161 HOH A2162 SITE 1 AC2 6 ASN B 414 GLU B 417 TRP B 420 LYS B 453 SITE 2 AC2 6 HOH B2061 ILE H 1 SITE 1 AC3 4 ARG B 471 LYS B 472 TYR D 448 LYS E 144 SITE 1 AC4 7 HIS C 242 ASN C 261 GLY C 262 THR C 263 SITE 2 AC4 7 HIS C 264 HOH C2129 HOH C2131 SITE 1 AC5 6 GLN B 465 TYR C 334 THR C 337 SER C 338 SITE 2 AC5 6 GLU D 396 PHE D 399 SITE 1 AC6 8 ASP C 303 ASN C 306 HOH C2069 LEU E 19 SITE 2 AC6 8 GLU E 20 ARG E 23 ASP E 44 LEU E 53 SITE 1 AC7 7 GLU A 275 HOH A2117 ASN F 74 ASP F 105 SITE 2 AC7 7 ALA F 108 HOH F2086 HOH F2134 SITE 1 AC8 5 GLY F 124 HIS F 125 LEU F 126 GLU F 127 SITE 2 AC8 5 HOH F2135 CRYST1 61.000 81.600 163.200 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016393 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006127 0.00000