PDB Short entry for 2Y34
HEADER    OXIDOREDUCTASE                          18-DEC-10   2Y34              
TITLE     S-NITROSYLATED PHD2 (NO EXPOSED) IN COMPLEX WITH FE(II) AND UN9       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: EGL NINE HOMOLOG 1;                                        
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 181-426;                        
COMPND   5 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2, PROLYL       
COMPND   6 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2, SM-20, HIF-PH2, HIF-PROLYL  
COMPND   7 HYDROXYLASE 2, HPH-2, PHD2;                                          
COMPND   8 EC: 1.14.11.-;                                                       
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_VECTOR: PET28A                                     
KEYWDS    OXIDOREDUCTASE, NON-HEME, TRANSCRIPTION AND EPIGENETIC REGULATION     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    R.CHOWDHURY,M.A.MCDONOUGH,C.J.SCHOFIELD                               
REVDAT   6   20-DEC-23 2Y34    1       REMARK LINK                              
REVDAT   5   30-JAN-19 2Y34    1       REMARK                                   
REVDAT   4   07-MAR-18 2Y34    1       SOURCE AUTHOR JRNL                       
REVDAT   3   22-JUN-11 2Y34    1       JRNL                                     
REVDAT   2   01-JUN-11 2Y34    1       JRNL   REMARK                            
REVDAT   1   29-DEC-10 2Y34    0                                                
JRNL        AUTH   R.CHOWDHURY,E.FLASHMAN,J.MECINOVIC,H.B.KRAMER,B.M.KESSLER,   
JRNL        AUTH 2 Y.M.FRAPART,J.L.BOUCHER,I.J.CLIFTON,M.A.MCDONOUGH,           
JRNL        AUTH 3 C.J.SCHOFIELD                                                
JRNL        TITL   STUDIES ON THE REACTION OF NITRIC OXIDE WITH THE             
JRNL        TITL 2 HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE DOMAIN 2         
JRNL        TITL 3 (EGLN1).                                                     
JRNL        REF    J. MOL. BIOL.                 V. 410   268 2011              
JRNL        REFN                   ESSN 1089-8638                               
JRNL        PMID   21601578                                                     
JRNL        DOI    10.1016/J.JMB.2011.04.075                                    
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   R.CHOWDHURY,M.A.MCDONOUGH,J.MECINOVIC,C.LOENARZ,E.FLASHMAN,  
REMARK   1  AUTH 2 K.S.HEWITSON,C.DOMENE,C.J.SCHOFIELD                          
REMARK   1  TITL   STRUCTURAL BASIS FOR BINDING OF HYPOXIA-INDUCIBLE FACTOR TO  
REMARK   1  TITL 2 THE OXYGEN-SENSING PROLYL HYDROXYLASES.                      
REMARK   1  REF    STRUCTURE                     V.  17   981 2009              
REMARK   1  REFN                   ISSN 0969-2126                               
REMARK   1  PMID   19604478                                                     
REMARK   1  DOI    10.1016/J.STR.2009.06.002                                    
REMARK   1 REFERENCE 2                                                          
REMARK   1  AUTH   M.A.MCDONOUGH,V.LI,E.FLASHMAN,R.CHOWDHURY,C.MOHR,            
REMARK   1  AUTH 2 B.M.R.LIENARD,J.ZONDLO,N.J.OLDHAM,I.J.CLIFTON,J.LEWIS,       
REMARK   1  AUTH 3 L.A.MCNEILL,R.J.M.KURZEJA,K.S.HEWITSON,E.YANG,S.JORDAN,      
REMARK   1  AUTH 4 R.S.SYED,C.J.SCHOFIELD                                       
REMARK   1  TITL   CELLULAR OXYGEN SENSING: CRYSTAL STRUCTURE OF                
REMARK   1  TITL 2 HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE (PHD2).          
REMARK   1  REF    PROC.NATL.ACAD.SCI.USA        V. 103  9814 2006              
REMARK   1  REFN                   ISSN 0027-8424                               
REMARK   1  PMID   16782814                                                     
REMARK   1  DOI    10.1073/PNAS.0601283103                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.01 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : MAXIMUM LIKELIHOOD                              
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 27.58                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 108842.940                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 99.0                           
REMARK   3   NUMBER OF REFLECTIONS             : 18814                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.221                           
REMARK   3   FREE R VALUE                     : 0.225                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.600                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 986                             
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.007                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 10                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.01                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.08                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 94.70                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 1353                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3120                       
REMARK   3   BIN FREE R VALUE                    : 0.3100                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 5.60                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 80                           
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.035                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1702                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 39                                      
REMARK   3   SOLVENT ATOMS            : 113                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 20.80                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 36.70                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -3.17000                                             
REMARK   3    B22 (A**2) : -3.17000                                             
REMARK   3    B33 (A**2) : 6.35000                                              
REMARK   3    B12 (A**2) : 1.47000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.26                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.27                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.28                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.25                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.011                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.500                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 25.00                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.850                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : NULL  ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : NULL  ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : NULL  ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : NULL  ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.35                                                 
REMARK   3   BSOL        : 49.21                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  3  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  4  : SNC.PAR                                        
REMARK   3  PARAMETER FILE  5  : UN9.PAR                                        
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  3   : ION.TOP                                        
REMARK   3  TOPOLOGY FILE  4   : SNC.TOP                                        
REMARK   3  TOPOLOGY FILE  5   : UN9.TOP                                        
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: TREATMENT OF PHD2 WITH GSNO RESULTED IN   
REMARK   3  S-NITROSYLATION OF CYS 302, WHICH WAS REFINED AS R-S-NO. HOWEVER,   
REMARK   3  THE DIHEDRAL ANGLE FOR THE C-S-N-O GROUP SUGGESTS THAT THE          
REMARK   3  MODIFIED RESIDUE MAY, AT LEAST IN PART, BE THE R-S-N*-OH, WHICH     
REMARK   3  IS A PROPOSED REACTION INTERMEDIATE OF NO WITH THIOLS, OR THE O-    
REMARK   3  CENTRED THIONITROXIDE RADICAL R-S-NH-O*. OTHER POTENTIAL FORMS      
REMARK   3  SUCH AS R-S-NH-OH MAY ALSO RESULT FROM PARTIAL REDUCTION OF R-S-    
REMARK   3  NO DURING DATA COLLECTION.                                          
REMARK   4                                                                      
REMARK   4 2Y34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-10.                  
REMARK 100 THE DEPOSITION ID IS D_1290046779.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 13-MAY-05                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SRS                                
REMARK 200  BEAMLINE                       : PX14.1                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.488                              
REMARK 200  MONOCHROMATOR                  : SI 111                             
REMARK 200  OPTICS                         : MIRRORS                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC CCD                           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 18814                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.010                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 27.580                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 2.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.0                               
REMARK 200  DATA REDUNDANCY                : 2.900                              
REMARK 200  R MERGE                    (I) : 0.07000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 24.4200                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.08                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 94.7                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.50                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.57000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.070                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: PDB ENTRY 2G19                                       
REMARK 200                                                                      
REMARK 200 REMARK: NONE                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 51.32                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 4% DIOXANE,       
REMARK 280  0.1M MES PH6.5, VAPOR DIFFUSION, HANGING DROP, PRE-GROWN            
REMARK 280  CRYSTALS WERE EXPOSED TO NITRIC OXIDE SATURATED SOLUTION (1 ML,     
REMARK 280  DENSITY 1.34 G/L) FOR AN HOUR.                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z                                                
REMARK 290       3555   -X+Y,-X,Z                                               
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+1/2                                            
REMARK 290       6555   X-Y,X,Z+1/2                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       20.18900            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       20.18900            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       20.18900            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A   175                                                      
REMARK 465     SER A   176                                                      
REMARK 465     HIS A   177                                                      
REMARK 465     MET A   178                                                      
REMARK 465     ALA A   179                                                      
REMARK 465     SER A   180                                                      
REMARK 465     PRO A   181                                                      
REMARK 465     ASN A   182                                                      
REMARK 465     GLY A   183                                                      
REMARK 465     GLN A   184                                                      
REMARK 465     THR A   185                                                      
REMARK 465     LYS A   186                                                      
REMARK 465     TYR A   403                                                      
REMARK 465     LEU A   404                                                      
REMARK 465     THR A   405                                                      
REMARK 465     GLY A   406                                                      
REMARK 465     GLU A   407                                                      
REMARK 465     LYS A   408                                                      
REMARK 465     GLY A   409                                                      
REMARK 465     VAL A   410                                                      
REMARK 465     ARG A   411                                                      
REMARK 465     VAL A   412                                                      
REMARK 465     GLU A   413                                                      
REMARK 465     LEU A   414                                                      
REMARK 465     ASN A   415                                                      
REMARK 465     LYS A   416                                                      
REMARK 465     PRO A   417                                                      
REMARK 465     SER A   418                                                      
REMARK 465     ASP A   419                                                      
REMARK 465     SER A   420                                                      
REMARK 465     VAL A   421                                                      
REMARK 465     GLY A   422                                                      
REMARK 465     LYS A   423                                                      
REMARK 465     ASP A   424                                                      
REMARK 465     VAL A   425                                                      
REMARK 465     PHE A   426                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A 348    CD   OE1  OE2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    PRO A 347   C   -  N   -  CA  ANGL. DEV. =   9.7 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A 197      -55.07   -134.03                                   
REMARK 500    GLN A 243      -83.65   -104.82                                   
REMARK 500    LYS A 244       39.38     71.28                                   
REMARK 500    SER A 245       -9.50     46.35                                   
REMARK 500    PHE A 346       79.65   -107.50                                   
REMARK 500    GLU A 348      -85.63     47.85                                   
REMARK 500    ALA A 351      -60.30    -22.53                                   
REMARK 500    GLN A 352     -179.11    -65.91                                   
REMARK 500    ASP A 369     -168.37    -78.85                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             FE2 A 501  FE                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS A 313   NE2                                                    
REMARK 620 2 ASP A 315   OD1  92.1                                              
REMARK 620 3 HIS A 374   NE2  87.8  89.8                                        
REMARK 620 4 UN9 A 601   N8   84.1 113.4 155.6                                  
REMARK 620 5 UN9 A 601   O13  96.0 167.6  81.2  76.8                            
REMARK 620 6 HOH A2073   O   171.3  87.0 100.8  88.4  86.3                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UN9 A 601                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UN9 A 602                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2HBT   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF HIF PROLYL HYDROXYLASE EGLN-1 INCOMPLEX WITH A  
REMARK 900 BIOLOGICALLY ACTIVE INHIBITOR                                        
REMARK 900 RELATED ID: 2G1M   RELATED DB: PDB                                   
REMARK 900 CELLULAR OXYGEN SENSING: CRYSTAL STRUCTURE OF HYPOXIA- INDUCIBLE     
REMARK 900 FACTOR PROLYL HYDROXYLASE (PHD2)                                     
REMARK 900 RELATED ID: 2G19   RELATED DB: PDB                                   
REMARK 900 CELLULAR OXYGEN SENSING: CRYSTAL STRUCTURE OF HYPOXIA- INDUCIBLE     
REMARK 900 FACTOR PROLYL HYDROXYLASE (PHD2)                                     
REMARK 900 RELATED ID: 2HBU   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF HIF PROLYL HYDROXYLASE EGLN-1 INCOMPLEX WITH A  
REMARK 900 BIOLOGICALLY ACTIVE INHIBITOR                                        
REMARK 900 RELATED ID: 2Y33   RELATED DB: PDB                                   
REMARK 900 S-NITROSYLATED PHD2 (GSNO SOAKED) IN COMPLEX WITH ZN(II) AND UN9     
DBREF  2Y34 A  181   426  UNP    Q9GZT9   EGLN1_HUMAN    181    426             
SEQADV 2Y34 GLY A  175  UNP  Q9GZT9              EXPRESSION TAG                 
SEQADV 2Y34 SER A  176  UNP  Q9GZT9              EXPRESSION TAG                 
SEQADV 2Y34 HIS A  177  UNP  Q9GZT9              EXPRESSION TAG                 
SEQADV 2Y34 MET A  178  UNP  Q9GZT9              EXPRESSION TAG                 
SEQADV 2Y34 ALA A  179  UNP  Q9GZT9              EXPRESSION TAG                 
SEQADV 2Y34 SER A  180  UNP  Q9GZT9              EXPRESSION TAG                 
SEQRES   1 A  252  GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO          
SEQRES   2 A  252  LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO          
SEQRES   3 A  252  CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE          
SEQRES   4 A  252  LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL          
SEQRES   5 A  252  ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN          
SEQRES   6 A  252  LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG          
SEQRES   7 A  252  GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY          
SEQRES   8 A  252  CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP          
SEQRES   9 A  252  LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS          
SEQRES  10 A  252  ILE ASN GLY ARG THR LYS ALA MET VAL ALA SNC TYR PRO          
SEQRES  11 A  252  GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO          
SEQRES  12 A  252  ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU          
SEQRES  13 A  252  ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU          
SEQRES  14 A  252  ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE          
SEQRES  15 A  252  GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP          
SEQRES  16 A  252  ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR          
SEQRES  17 A  252  ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU          
SEQRES  18 A  252  ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU LYS          
SEQRES  19 A  252  GLY VAL ARG VAL GLU LEU ASN LYS PRO SER ASP SER VAL          
SEQRES  20 A  252  GLY LYS ASP VAL PHE                                          
MODRES 2Y34 SNC A  302  CYS  S-NITROSO-CYSTEINE                                 
HET    SNC  A 302       8                                                       
HET    FE2  A 501       1                                                       
HET    UN9  A 601      19                                                       
HET    UN9  A 602      19                                                       
HETNAM     SNC S-NITROSO-CYSTEINE                                               
HETNAM     FE2 FE (II) ION                                                      
HETNAM     UN9 N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE          
FORMUL   1  SNC    C3 H6 N2 O3 S                                                
FORMUL   2  FE2    FE 2+                                                        
FORMUL   3  UN9    2(C12 H9 CL N2 O4)                                           
FORMUL   5  HOH   *113(H2 O)                                                    
HELIX    1   1 PRO A  189  TYR A  197  1                                   9    
HELIX    2   2 TYR A  197  GLY A  206  1                                  10    
HELIX    3   3 GLY A  215  THR A  232  1                                  18    
HELIX    4   4 CYS A  266  HIS A  282  1                                  17    
HELIX    5   5 ASP A  335  GLY A  340  1                                   6    
HELIX    6   6 ALA A  393  ARG A  398  1                                   6    
SHEET    1  AA 6 ILE A 207  VAL A 210  0                                        
SHEET    2  AA 6 ARG A 362  TRP A 367 -1  O  LEU A 363   N  VAL A 210           
SHEET    3  AA 6 ARG A 322  TYR A 329 -1  O  THR A 325   N  PHE A 366           
SHEET    4  AA 6 ARG A 383  ASP A 392 -1  O  ILE A 386   N  TYR A 328           
SHEET    5  AA 6 ALA A 298  TYR A 303 -1  O  MET A 299   N  THR A 387           
SHEET    6  AA 6 LYS A 255  ILE A 259 -1  O  LYS A 255   N  SNC A 302           
SHEET    1  AB 5 ILE A 207  VAL A 210  0                                        
SHEET    2  AB 5 ARG A 362  TRP A 367 -1  O  LEU A 363   N  VAL A 210           
SHEET    3  AB 5 ARG A 322  TYR A 329 -1  O  THR A 325   N  PHE A 366           
SHEET    4  AB 5 ARG A 383  ASP A 392 -1  O  ILE A 386   N  TYR A 328           
SHEET    5  AB 5 ILE A 292  ARG A 295  1  N  ASN A 293   O  PHE A 391           
SHEET    1  AC 2 LEU A 240  SER A 242  0                                        
SHEET    2  AC 2 ILE A 251  ARG A 252 -1  O  ILE A 251   N  VAL A 241           
SHEET    1  AD 4 TYR A 310  HIS A 313  0                                        
SHEET    2  AD 4 HIS A 374  VAL A 376 -1  O  HIS A 374   N  HIS A 313           
SHEET    3  AD 4 LEU A 343  ILE A 345 -1  O  ARG A 344   N  GLU A 375           
SHEET    4  AD 4 ALA A 354  ILE A 356 -1  O  ALA A 354   N  ILE A 345           
LINK         C   ALA A 301                 N   SNC A 302     1555   1555  1.32  
LINK         C   SNC A 302                 N   TYR A 303     1555   1555  1.33  
LINK         NE2 HIS A 313                FE   FE2 A 501     1555   1555  2.34  
LINK         OD1 ASP A 315                FE   FE2 A 501     1555   1555  2.22  
LINK         NE2 HIS A 374                FE   FE2 A 501     1555   1555  2.29  
LINK        FE   FE2 A 501                 N8  UN9 A 601     1555   1555  2.24  
LINK        FE   FE2 A 501                 O13 UN9 A 601     1555   1555  2.24  
LINK        FE   FE2 A 501                 O   HOH A2073     1555   1555  2.27  
SITE     1 AC1  5 HIS A 313  ASP A 315  HIS A 374  UN9 A 601                    
SITE     2 AC1  5 HOH A2073                                                     
SITE     1 AC2 16 ASP A 254  MET A 299  TYR A 303  TYR A 310                    
SITE     2 AC2 16 HIS A 313  ASP A 315  TYR A 329  LEU A 343                    
SITE     3 AC2 16 HIS A 374  VAL A 376  ARG A 383  ARG A 398                    
SITE     4 AC2 16 VAL A 401  FE2 A 501  HOH A2073  HOH A2112                    
SITE     1 AC3  7 TRP A 258  ASP A 320  ARG A 322  PHE A 391                    
SITE     2 AC3  7 VAL A 401  HOH A2054  HOH A2113                               
CRYST1  110.302  110.302   40.378  90.00  90.00 120.00 P 63          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.009066  0.005234  0.000000        0.00000                         
SCALE2      0.000000  0.010469  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.024766        0.00000