PDB Short entry for 2Y3I HEADER TRANSFERASE 21-DEC-10 2Y3I TITLE THE STRUCTURE OF THE FULLY CLOSED CONFORMATION OF HUMAN PGK IN COMPLEX TITLE 2 WITH L-ADP, 3PG AND THE TSA ALUMINIUM TETRAFLUORIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCERATE KINASE 1; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: RESIDUES 1-416; COMPND 5 SYNONYM: PHOSPHOGLYCERATE KINASE, CELL MIGRATION-INDUCING GENE 10 COMPND 6 PROTEIN, PRIMER RECOGNITION PROTEIN 2, PRP 2; COMPND 7 EC: 2.7.2.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS TRANSFERASE, AIDS, HEPATITIS, CANCER, L-NUCLEOSIDE ANALOGUES, KEYWDS 2 GLYCOLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR M.W.BOWLER,L.CHALOIN,C.LIONNE REVDAT 5 20-DEC-23 2Y3I 1 REMARK LINK REVDAT 4 23-JAN-19 2Y3I 1 REMARK LINK REVDAT 3 20-JUN-18 2Y3I 1 REMARK LINK REVDAT 2 29-JUN-11 2Y3I 1 COMPND JRNL REMARK REVDAT 1 27-APR-11 2Y3I 0 JRNL AUTH P.LALLEMAND,L.CHALOIN,B.ROY,T.BARMAN,M.W.BOWLER,C.LIONNE JRNL TITL INTERACTION OF HUMAN 3-PHOSPHOGLYCERATE KINASE WITH ITS TWO JRNL TITL 2 SUBSTRATES: IS SUBSTRATE ANTAGONISM A KINETIC ADVANTAGE? JRNL REF J.MOL.BIOL. V. 409 742 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21549713 JRNL DOI 10.1016/J.JMB.2011.04.048 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0085 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 16087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3850 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -3.12000 REMARK 3 B33 (A**2) : 3.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.580 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.569 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.870 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6388 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4338 ; 0.019 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8622 ; 1.683 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10682 ; 1.375 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 826 ; 5.783 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;41.748 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1160 ;23.306 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.525 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 984 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7016 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1132 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 190 1 REMARK 3 1 D 2 D 190 1 REMARK 3 2 A 200 A 400 1 REMARK 3 2 D 200 D 400 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 4953 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 4953 ; 0.08 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 4953 ; 10.33 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 4953 ; 10.33 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4140 -3.5700 5.3370 REMARK 3 T TENSOR REMARK 3 T11: 0.7917 T22: 0.9705 REMARK 3 T33: 1.6464 T12: 0.5727 REMARK 3 T13: -0.8620 T23: -0.5111 REMARK 3 L TENSOR REMARK 3 L11: 4.3998 L22: 4.8717 REMARK 3 L33: 2.8640 L12: 1.0430 REMARK 3 L13: 0.0349 L23: 1.7347 REMARK 3 S TENSOR REMARK 3 S11: 0.1795 S12: -0.7142 S13: -1.3673 REMARK 3 S21: 1.3660 S22: 0.9879 S23: -2.6396 REMARK 3 S31: 1.2109 S32: 1.3764 S33: -1.1674 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6280 -10.5450 31.9010 REMARK 3 T TENSOR REMARK 3 T11: 0.3710 T22: 0.3238 REMARK 3 T33: 0.2708 T12: 0.0311 REMARK 3 T13: -0.1452 T23: -0.0813 REMARK 3 L TENSOR REMARK 3 L11: 0.4961 L22: 0.3413 REMARK 3 L33: 2.5875 L12: 0.1184 REMARK 3 L13: 0.5388 L23: 0.1937 REMARK 3 S TENSOR REMARK 3 S11: 0.1409 S12: -0.1567 S13: -0.1098 REMARK 3 S21: 0.3040 S22: 0.0671 S23: -0.1400 REMARK 3 S31: 0.3917 S32: 0.2964 S33: -0.2080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2Y3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1290046804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : KB REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2WZC REMARK 200 REMARK 200 REMARK: DATA WERE COLLECTED FROM 10UM NEEDLE USING A HELICAL DATA REMARK 200 COLLECTION STRATEGY IN AN AREA DEFINED BY DIFFRACTION CARTOGRAPHY REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 2000MME, 0.1 M BIS/TRIS PH 6.5 REMARK 280 . REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.20950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.54700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.93850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.54700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.20950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.93850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 MET D 0 REMARK 465 SER D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU D 84 CG LEU D 88 1.38 REMARK 500 O LEU D 84 CD2 LEU D 88 1.65 REMARK 500 MG MG A 1416 O1A LA8 A 1418 1.67 REMARK 500 O ALA D 111 OG SER D 114 1.68 REMARK 500 O LEU D 84 CD1 LEU D 88 1.69 REMARK 500 O ALA A 111 OG SER A 114 1.70 REMARK 500 O PRO A 66 OD1 ASP A 67 1.74 REMARK 500 O LEU A 84 CG LEU A 88 2.00 REMARK 500 OD2 ASP D 67 NZ LYS D 132 2.01 REMARK 500 O1B LA8 D 1416 AL ALF D 1417 2.03 REMARK 500 CA LYS D 85 CD1 LEU D 88 2.04 REMARK 500 OD2 ASP A 67 NZ LYS A 132 2.04 REMARK 500 OD2 ASP A 23 OG1 THR A 167 2.05 REMARK 500 OD1 ASP A 284 OG SER A 319 2.06 REMARK 500 OD1 ASP D 284 OG SER D 319 2.09 REMARK 500 O LEU D 222 OE2 GLU D 403 2.17 REMARK 500 AL ALF A 1419 O2 3PG A 1420 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 96 O LEU D 247 2455 1.03 REMARK 500 NZ LYS A 96 C LEU D 247 2455 1.78 REMARK 500 CE LYS A 96 CA ASN D 248 2455 1.91 REMARK 500 NZ LYS A 274 NZ LYS A 360 1455 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 88 CG LEU A 88 CD2 0.336 REMARK 500 LYS A 132 CE LYS A 132 NZ -0.367 REMARK 500 SER A 135 CB SER A 135 OG -0.082 REMARK 500 LYS A 138 CE LYS A 138 NZ 0.243 REMARK 500 GLU A 142 CD GLU A 142 OE1 0.093 REMARK 500 GLU A 147 CD GLU A 147 OE1 0.216 REMARK 500 GLU A 201 CD GLU A 201 OE2 -0.104 REMARK 500 GLU A 204 CD GLU A 204 OE1 0.070 REMARK 500 LYS A 321 CE LYS A 321 NZ 0.157 REMARK 500 LEU D 88 CG LEU D 88 CD1 0.284 REMARK 500 LYS D 90 CE LYS D 90 NZ 0.150 REMARK 500 SER D 135 CB SER D 135 OG -0.083 REMARK 500 LYS D 138 CE LYS D 138 NZ 0.178 REMARK 500 GLU D 204 CD GLU D 204 OE1 0.096 REMARK 500 GLU D 204 CD GLU D 204 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 3 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 ASP A 12 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 MET A 71 CG - SD - CE ANGL. DEV. = 10.6 DEGREES REMARK 500 LEU A 88 CB - CG - CD1 ANGL. DEV. = -21.5 DEGREES REMARK 500 LYS A 96 CB - CG - CD ANGL. DEV. = 21.9 DEGREES REMARK 500 LYS A 132 CD - CE - NZ ANGL. DEV. = 22.1 DEGREES REMARK 500 LYS A 138 CD - CE - NZ ANGL. DEV. = -17.0 DEGREES REMARK 500 GLU A 147 OE1 - CD - OE2 ANGL. DEV. = 8.7 DEGREES REMARK 500 GLU A 201 OE1 - CD - OE2 ANGL. DEV. = -12.8 DEGREES REMARK 500 GLU A 201 CG - CD - OE2 ANGL. DEV. = 15.7 DEGREES REMARK 500 LYS A 381 CD - CE - NZ ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP D 12 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET D 71 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 LEU D 88 CB - CG - CD2 ANGL. DEV. = 26.7 DEGREES REMARK 500 LYS D 96 CB - CG - CD ANGL. DEV. = 19.7 DEGREES REMARK 500 LYS D 132 CD - CE - NZ ANGL. DEV. = 29.3 DEGREES REMARK 500 LYS D 138 CD - CE - NZ ANGL. DEV. = -18.6 DEGREES REMARK 500 GLU D 147 CG - CD - OE2 ANGL. DEV. = -13.9 DEGREES REMARK 500 GLU D 251 OE1 - CD - OE2 ANGL. DEV. = -11.3 DEGREES REMARK 500 LYS D 381 CD - CE - NZ ANGL. DEV. = 17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 -26.22 21.99 REMARK 500 ASN A 31 13.91 85.12 REMARK 500 LYS A 74 -64.19 -104.97 REMARK 500 TYR A 75 46.67 -100.98 REMARK 500 ALA A 81 -58.82 79.32 REMARK 500 ASN A 109 89.71 -166.09 REMARK 500 LEU A 200 -150.28 -91.48 REMARK 500 GLU A 201 -46.95 56.29 REMARK 500 SER D 3 98.45 -59.87 REMARK 500 ASN D 4 -11.44 126.02 REMARK 500 ASN D 31 14.23 84.85 REMARK 500 LYS D 74 -64.01 -106.60 REMARK 500 TYR D 75 47.74 -101.71 REMARK 500 ALA D 81 -59.43 79.96 REMARK 500 ASN D 109 91.08 -167.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 80 ALA A 81 40.06 REMARK 500 VAL D 80 ALA D 81 38.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 147 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ADENOSINE-5'-DIPHOSPHATE (LA8): THIS IS THE L-ENANTIOMER OF REMARK 600 ADP REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1416 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 374 OD1 REMARK 620 2 LA8 A1418 O3B 74.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1418 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 374 OD1 REMARK 620 2 LA8 D1416 O1A 91.2 REMARK 620 3 LA8 D1416 O3B 68.8 68.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA8 D 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF D 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 1418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA8 A 1418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 1419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG D 1420 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG A 1420 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XE7 RELATED DB: PDB REMARK 900 THE COMPLETE REACTION CYCLE OF HUMAN PHOSPHOGLYCERATE KINASE: THE REMARK 900 OPEN TERNARY COMPLEX WITH 3PG AND ADP REMARK 900 RELATED ID: 2XE6 RELATED DB: PDB REMARK 900 THE COMPLETE REACTION CYCLE OF HUMAN PHOSPHOGLYCERATE KINASE: THE REMARK 900 OPEN BINARY COMPLEX WITH 3PG REMARK 900 RELATED ID: 2WZB RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN REMARK 900 PHOSPHOGLYCERATE KINASE IN COMPLEX WITH ADP, 3PG AND MAGNESIUM REMARK 900 TRIFLUORIDE REMARK 900 RELATED ID: 2WZC RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN REMARK 900 PHOSPHOGLYCERATE KINASE IN COMPLEX WITH ADP, 3PG AND ALUMINIUM REMARK 900 TETRAFLUORIDE REMARK 900 RELATED ID: 2X14 RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN REMARK 900 PHOSPHOGLYCERATE KINASE K219A MUTANT IN COMPLEX WITH AMP-PCP AND 3PG REMARK 900 RELATED ID: 2X15 RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN REMARK 900 PHOSPHOGLYCERATE KINASE IN COMPLEX WITH ADP AND 1,3- REMARK 900 BISPHOSPHOGLYCERATE REMARK 900 RELATED ID: 2WZD RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN REMARK 900 PHOSPHOGLYCERATE KINASE K219A MUTANT IN COMPLEX WITH ADP, 3PG AND REMARK 900 ALUMINIUM TRIFLUORIDE REMARK 900 RELATED ID: 2X13 RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED CONFORMATION OF HUMAN REMARK 900 PHOSPHOGLYCERATE KINASE IN COMPLEX WITH ADP AND 3PHOSPHOGLYCERATE REMARK 900 RELATED ID: 2XE8 RELATED DB: PDB REMARK 900 THE COMPLETE REACTION CYCLE OF HUMAN PHOSPHOGLYCERATE KINASE: THE REMARK 900 OPEN TERNARY COMPLEX WITH 3PG AND AMP-PNP DBREF 2Y3I A 0 415 UNP P00558 PGK1_HUMAN 1 416 DBREF 2Y3I D 0 415 UNP P00558 PGK1_HUMAN 1 416 SEQADV 2Y3I MET A 2 UNP P00558 LEU 3 CONFLICT SEQADV 2Y3I MET D 2 UNP P00558 LEU 3 CONFLICT SEQRES 1 A 416 MET SER MET SER ASN LYS LEU THR LEU ASP LYS LEU ASP SEQRES 2 A 416 VAL LYS GLY LYS ARG VAL VAL MET ARG VAL ASP PHE ASN SEQRES 3 A 416 VAL PRO MET LYS ASN ASN GLN ILE THR ASN ASN GLN ARG SEQRES 4 A 416 ILE LYS ALA ALA VAL PRO SER ILE LYS PHE CYS LEU ASP SEQRES 5 A 416 ASN GLY ALA LYS SER VAL VAL LEU MET SER HIS LEU GLY SEQRES 6 A 416 ARG PRO ASP GLY VAL PRO MET PRO ASP LYS TYR SER LEU SEQRES 7 A 416 GLU PRO VAL ALA VAL GLU LEU LYS SER LEU LEU GLY LYS SEQRES 8 A 416 ASP VAL LEU PHE LEU LYS ASP CYS VAL GLY PRO GLU VAL SEQRES 9 A 416 GLU LYS ALA CYS ALA ASN PRO ALA ALA GLY SER VAL ILE SEQRES 10 A 416 LEU LEU GLU ASN LEU ARG PHE HIS VAL GLU GLU GLU GLY SEQRES 11 A 416 LYS GLY LYS ASP ALA SER GLY ASN LYS VAL LYS ALA GLU SEQRES 12 A 416 PRO ALA LYS ILE GLU ALA PHE ARG ALA SER LEU SER LYS SEQRES 13 A 416 LEU GLY ASP VAL TYR VAL ASN ASP ALA PHE GLY THR ALA SEQRES 14 A 416 HIS ARG ALA HIS SER SER MET VAL GLY VAL ASN LEU PRO SEQRES 15 A 416 GLN LYS ALA GLY GLY PHE LEU MET LYS LYS GLU LEU ASN SEQRES 16 A 416 TYR PHE ALA LYS ALA LEU GLU SER PRO GLU ARG PRO PHE SEQRES 17 A 416 LEU ALA ILE LEU GLY GLY ALA LYS VAL ALA ASP LYS ILE SEQRES 18 A 416 GLN LEU ILE ASN ASN MET LEU ASP LYS VAL ASN GLU MET SEQRES 19 A 416 ILE ILE GLY GLY GLY MET ALA PHE THR PHE LEU LYS VAL SEQRES 20 A 416 LEU ASN ASN MET GLU ILE GLY THR SER LEU PHE ASP GLU SEQRES 21 A 416 GLU GLY ALA LYS ILE VAL LYS ASP LEU MET SER LYS ALA SEQRES 22 A 416 GLU LYS ASN GLY VAL LYS ILE THR LEU PRO VAL ASP PHE SEQRES 23 A 416 VAL THR ALA ASP LYS PHE ASP GLU ASN ALA LYS THR GLY SEQRES 24 A 416 GLN ALA THR VAL ALA SER GLY ILE PRO ALA GLY TRP MET SEQRES 25 A 416 GLY LEU ASP CYS GLY PRO GLU SER SER LYS LYS TYR ALA SEQRES 26 A 416 GLU ALA VAL THR ARG ALA LYS GLN ILE VAL TRP ASN GLY SEQRES 27 A 416 PRO VAL GLY VAL PHE GLU TRP GLU ALA PHE ALA ARG GLY SEQRES 28 A 416 THR LYS ALA LEU MET ASP GLU VAL VAL LYS ALA THR SER SEQRES 29 A 416 ARG GLY CYS ILE THR ILE ILE GLY GLY GLY ASP THR ALA SEQRES 30 A 416 THR CYS CYS ALA LYS TRP ASN THR GLU ASP LYS VAL SER SEQRES 31 A 416 HIS VAL SER THR GLY GLY GLY ALA SER LEU GLU LEU LEU SEQRES 32 A 416 GLU GLY LYS VAL LEU PRO GLY VAL ASP ALA LEU SER ASN SEQRES 1 D 416 MET SER MET SER ASN LYS LEU THR LEU ASP LYS LEU ASP SEQRES 2 D 416 VAL LYS GLY LYS ARG VAL VAL MET ARG VAL ASP PHE ASN SEQRES 3 D 416 VAL PRO MET LYS ASN ASN GLN ILE THR ASN ASN GLN ARG SEQRES 4 D 416 ILE LYS ALA ALA VAL PRO SER ILE LYS PHE CYS LEU ASP SEQRES 5 D 416 ASN GLY ALA LYS SER VAL VAL LEU MET SER HIS LEU GLY SEQRES 6 D 416 ARG PRO ASP GLY VAL PRO MET PRO ASP LYS TYR SER LEU SEQRES 7 D 416 GLU PRO VAL ALA VAL GLU LEU LYS SER LEU LEU GLY LYS SEQRES 8 D 416 ASP VAL LEU PHE LEU LYS ASP CYS VAL GLY PRO GLU VAL SEQRES 9 D 416 GLU LYS ALA CYS ALA ASN PRO ALA ALA GLY SER VAL ILE SEQRES 10 D 416 LEU LEU GLU ASN LEU ARG PHE HIS VAL GLU GLU GLU GLY SEQRES 11 D 416 LYS GLY LYS ASP ALA SER GLY ASN LYS VAL LYS ALA GLU SEQRES 12 D 416 PRO ALA LYS ILE GLU ALA PHE ARG ALA SER LEU SER LYS SEQRES 13 D 416 LEU GLY ASP VAL TYR VAL ASN ASP ALA PHE GLY THR ALA SEQRES 14 D 416 HIS ARG ALA HIS SER SER MET VAL GLY VAL ASN LEU PRO SEQRES 15 D 416 GLN LYS ALA GLY GLY PHE LEU MET LYS LYS GLU LEU ASN SEQRES 16 D 416 TYR PHE ALA LYS ALA LEU GLU SER PRO GLU ARG PRO PHE SEQRES 17 D 416 LEU ALA ILE LEU GLY GLY ALA LYS VAL ALA ASP LYS ILE SEQRES 18 D 416 GLN LEU ILE ASN ASN MET LEU ASP LYS VAL ASN GLU MET SEQRES 19 D 416 ILE ILE GLY GLY GLY MET ALA PHE THR PHE LEU LYS VAL SEQRES 20 D 416 LEU ASN ASN MET GLU ILE GLY THR SER LEU PHE ASP GLU SEQRES 21 D 416 GLU GLY ALA LYS ILE VAL LYS ASP LEU MET SER LYS ALA SEQRES 22 D 416 GLU LYS ASN GLY VAL LYS ILE THR LEU PRO VAL ASP PHE SEQRES 23 D 416 VAL THR ALA ASP LYS PHE ASP GLU ASN ALA LYS THR GLY SEQRES 24 D 416 GLN ALA THR VAL ALA SER GLY ILE PRO ALA GLY TRP MET SEQRES 25 D 416 GLY LEU ASP CYS GLY PRO GLU SER SER LYS LYS TYR ALA SEQRES 26 D 416 GLU ALA VAL THR ARG ALA LYS GLN ILE VAL TRP ASN GLY SEQRES 27 D 416 PRO VAL GLY VAL PHE GLU TRP GLU ALA PHE ALA ARG GLY SEQRES 28 D 416 THR LYS ALA LEU MET ASP GLU VAL VAL LYS ALA THR SER SEQRES 29 D 416 ARG GLY CYS ILE THR ILE ILE GLY GLY GLY ASP THR ALA SEQRES 30 D 416 THR CYS CYS ALA LYS TRP ASN THR GLU ASP LYS VAL SER SEQRES 31 D 416 HIS VAL SER THR GLY GLY GLY ALA SER LEU GLU LEU LEU SEQRES 32 D 416 GLU GLY LYS VAL LEU PRO GLY VAL ASP ALA LEU SER ASN HET MG A1416 1 HET CL A1417 1 HET LA8 A1418 27 HET ALF A1419 5 HET 3PG A1420 11 HET LA8 D1416 27 HET ALF D1417 5 HET MG D1418 1 HET CL D1419 1 HET 3PG D1420 11 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM LA8 L-ADENOSINE-5'-DIPHOSPHATE HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM 3PG 3-PHOSPHOGLYCERIC ACID HETSYN LA8 L-ADP FORMUL 3 MG 2(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 5 LA8 2(C10 H15 N5 O10 P2) FORMUL 6 ALF 2(AL F4 1-) FORMUL 7 3PG 2(C3 H7 O7 P) FORMUL 13 HOH *16(H2 O) HELIX 1 1 LEU A 8 LEU A 11 5 4 HELIX 2 2 ASN A 36 ALA A 41 1 6 HELIX 3 3 ALA A 42 ASN A 52 1 11 HELIX 4 4 VAL A 82 GLY A 89 1 8 HELIX 5 5 GLY A 100 ALA A 108 1 9 HELIX 6 6 ASN A 120 HIS A 124 5 5 HELIX 7 7 GLU A 142 SER A 154 1 13 HELIX 8 8 ALA A 164 ALA A 168 5 5 HELIX 9 9 HIS A 172 GLY A 177 1 6 HELIX 10 10 GLY A 186 LEU A 200 1 15 HELIX 11 11 LYS A 215 LEU A 227 1 13 HELIX 12 12 GLY A 238 ASN A 249 1 12 HELIX 13 13 GLU A 260 LYS A 263 5 4 HELIX 14 14 ILE A 264 GLY A 276 1 13 HELIX 15 15 GLY A 316 ALA A 330 1 15 HELIX 16 16 ALA A 348 ARG A 364 1 17 HELIX 17 17 ASP A 374 ASN A 383 1 10 HELIX 18 18 GLY A 395 GLY A 404 1 10 HELIX 19 19 LEU A 407 ALA A 412 1 6 HELIX 20 20 LEU D 8 LEU D 11 5 4 HELIX 21 21 ASN D 36 ALA D 42 1 7 HELIX 22 22 ALA D 42 ASN D 52 1 11 HELIX 23 23 VAL D 82 GLY D 89 1 8 HELIX 24 24 GLY D 100 ALA D 108 1 9 HELIX 25 25 ASN D 120 HIS D 124 5 5 HELIX 26 26 GLU D 142 SER D 154 1 13 HELIX 27 27 LYS D 155 GLY D 157 5 3 HELIX 28 28 ALA D 164 ALA D 168 5 5 HELIX 29 29 HIS D 172 GLY D 177 1 6 HELIX 30 30 GLY D 186 SER D 202 1 17 HELIX 31 31 LYS D 215 LEU D 227 1 13 HELIX 32 32 GLY D 238 ASN D 249 1 12 HELIX 33 33 GLU D 260 LYS D 263 5 4 HELIX 34 34 ILE D 264 ASN D 275 1 12 HELIX 35 35 GLY D 316 ALA D 330 1 15 HELIX 36 36 TRP D 344 PHE D 347 5 4 HELIX 37 37 ALA D 348 ARG D 364 1 17 HELIX 38 38 THR D 375 TRP D 382 1 8 HELIX 39 39 GLY D 395 GLU D 403 1 9 HELIX 40 40 LEU D 407 ALA D 412 1 6 SHEET 1 AA 6 VAL A 92 PHE A 94 0 SHEET 2 AA 6 SER A 114 LEU A 117 1 O VAL A 115 N LEU A 93 SHEET 3 AA 6 SER A 56 MET A 60 1 O VAL A 57 N ILE A 116 SHEET 4 AA 6 ARG A 17 ARG A 21 1 O VAL A 18 N VAL A 58 SHEET 5 AA 6 VAL A 159 ASN A 162 1 O VAL A 159 N VAL A 19 SHEET 6 AA 6 LYS A 183 GLY A 185 1 O ALA A 184 N ASN A 162 SHEET 1 AB 2 MET A 28 LYS A 29 0 SHEET 2 AB 2 GLN A 32 ILE A 33 -1 O GLN A 32 N LYS A 29 SHEET 1 AC 2 LYS A 130 LYS A 132 0 SHEET 2 AC 2 LYS A 138 LYS A 140 -1 O VAL A 139 N GLY A 131 SHEET 1 AD 6 LYS A 278 THR A 280 0 SHEET 2 AD 6 GLU A 232 ILE A 235 1 O MET A 233 N THR A 280 SHEET 3 AD 6 PHE A 207 LEU A 211 1 O PHE A 207 N GLU A 232 SHEET 4 AD 6 GLN A 332 ASN A 336 1 O GLN A 332 N LEU A 208 SHEET 5 AD 6 ILE A 367 GLY A 371 1 O ILE A 367 N ILE A 333 SHEET 6 AD 6 HIS A 390 SER A 392 1 O HIS A 390 N ILE A 370 SHEET 1 AE 3 THR A 297 THR A 301 0 SHEET 2 AE 3 ASP A 284 ALA A 288 -1 O PHE A 285 N ALA A 300 SHEET 3 AE 3 MET A 311 CYS A 315 -1 O MET A 311 N ALA A 288 SHEET 1 DA 6 VAL D 92 PHE D 94 0 SHEET 2 DA 6 SER D 114 LEU D 117 1 O VAL D 115 N LEU D 93 SHEET 3 DA 6 SER D 56 MET D 60 1 O VAL D 57 N ILE D 116 SHEET 4 DA 6 ARG D 17 ARG D 21 1 O VAL D 18 N VAL D 58 SHEET 5 DA 6 VAL D 159 ASN D 162 1 O VAL D 159 N VAL D 19 SHEET 6 DA 6 LYS D 183 GLY D 185 1 O ALA D 184 N ASN D 162 SHEET 1 DB 2 MET D 28 LYS D 29 0 SHEET 2 DB 2 GLN D 32 ILE D 33 -1 O GLN D 32 N LYS D 29 SHEET 1 DC 2 LYS D 130 LYS D 132 0 SHEET 2 DC 2 LYS D 138 LYS D 140 -1 O VAL D 139 N GLY D 131 SHEET 1 DD 6 LYS D 278 THR D 280 0 SHEET 2 DD 6 GLU D 232 ILE D 235 1 O MET D 233 N THR D 280 SHEET 3 DD 6 PHE D 207 LEU D 211 1 O PHE D 207 N GLU D 232 SHEET 4 DD 6 GLN D 332 ASN D 336 1 O GLN D 332 N LEU D 208 SHEET 5 DD 6 ILE D 367 GLY D 371 1 O ILE D 367 N ILE D 333 SHEET 6 DD 6 HIS D 390 SER D 392 1 O HIS D 390 N ILE D 370 SHEET 1 DE 3 THR D 297 THR D 301 0 SHEET 2 DE 3 ASP D 284 ALA D 288 -1 O PHE D 285 N ALA D 300 SHEET 3 DE 3 MET D 311 CYS D 315 -1 O MET D 311 N ALA D 288 LINK OD1 ASP A 374 MG MG A1416 1555 1555 2.03 LINK MG MG A1416 O3B LA8 A1418 1555 1555 2.28 LINK OD1 ASP D 374 MG MG D1418 1555 1555 2.15 LINK O1A LA8 D1416 MG MG D1418 1555 1555 2.02 LINK O3B LA8 D1416 MG MG D1418 1555 1555 2.22 CISPEP 1 VAL A 99 GLY A 100 0 -4.41 CISPEP 2 GLU A 128 GLY A 129 0 -15.85 CISPEP 3 ARG A 205 PRO A 206 0 3.63 CISPEP 4 VAL D 99 GLY D 100 0 -6.15 CISPEP 5 GLU D 128 GLY D 129 0 -15.23 CISPEP 6 ARG D 205 PRO D 206 0 3.02 SITE 1 AC1 3 ASP A 374 LA8 A1418 ALF A1419 SITE 1 AC2 14 GLY D 213 ALA D 214 LYS D 215 LYS D 219 SITE 2 AC2 14 ASN D 336 PRO D 338 GLY D 340 GLU D 343 SITE 3 AC2 14 GLY D 372 GLY D 373 ASP D 374 THR D 375 SITE 4 AC2 14 ALF D1417 MG D1418 SITE 1 AC3 3 LYS A 215 ALA A 217 ASP A 218 SITE 1 AC4 11 ARG D 38 LYS D 215 LYS D 219 GLY D 372 SITE 2 AC4 11 GLY D 373 GLY D 395 GLY D 396 LA8 D1416 SITE 3 AC4 11 MG D1418 3PG D1420 HOH D2005 SITE 1 AC5 3 ASP D 374 LA8 D1416 ALF D1417 SITE 1 AC6 3 ARG D 65 LYS D 215 ASP D 218 SITE 1 AC7 18 GLY A 213 ALA A 214 LYS A 215 LYS A 219 SITE 2 AC7 18 PHE A 291 ASN A 336 PRO A 338 GLY A 340 SITE 3 AC7 18 VAL A 341 PHE A 342 GLU A 343 GLY A 372 SITE 4 AC7 18 GLY A 373 ASP A 374 THR A 375 MG A1416 SITE 5 AC7 18 ALF A1419 HOH A2008 SITE 1 AC8 11 ARG A 38 LYS A 215 LYS A 219 GLY A 372 SITE 2 AC8 11 GLY A 373 ASP A 374 GLY A 395 GLY A 396 SITE 3 AC8 11 MG A1416 LA8 A1418 3PG A1420 SITE 1 AC9 11 ASP D 23 ASN D 25 ARG D 38 HIS D 62 SITE 2 AC9 11 ARG D 65 ARG D 122 GLY D 166 ARG D 170 SITE 3 AC9 11 LYS D 215 ALF D1417 HOH D2005 SITE 1 BC1 10 ASP A 23 ASN A 25 ARG A 38 HIS A 62 SITE 2 BC1 10 ARG A 65 ARG A 122 GLY A 166 ARG A 170 SITE 3 BC1 10 LYS A 215 ALF A1419 CRYST1 38.419 103.877 203.094 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004924 0.00000 MTRIX1 1 -0.998000 0.057000 -0.031000 -0.84352 1 MTRIX2 1 -0.040000 -0.161000 0.986000 0.19666 1 MTRIX3 1 0.051000 0.985000 0.163000 -0.25967 1