PDB Short entry for 2Y43 HEADER LIGASE 04-JAN-11 2Y43 TITLE RAD18 UBIQUITIN LIGASE RING DOMAIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RAD18; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RING DOMAIN, RESIDUES 1-99; COMPND 5 SYNONYM: RAD18, POSTREPLICATION REPAIR PROTEIN RAD18, RING FINGER COMPND 6 PROTEIN 73, HHR18, HRAD18; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS LIGASE, DNA REPAIR, METAL-BINDING, TRANSLESION SYNTHESIS, UBL KEYWDS 2 CONJUGATION PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR R.G.HIBBERT,T.K.SIXMA REVDAT 2 06-JUL-11 2Y43 1 JRNL REVDAT 1 11-MAY-11 2Y43 0 JRNL AUTH A.HUANG,R.G.HIBBERT,R.N.DE JONG,D.DAS,T.K.SIXMA,R.BOELENS JRNL TITL SYMMETRY AND ASYMMETRY OF THE RING-RING DIMER OF RAD18. JRNL REF J.MOL.BIOL. V. 410 424 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21549715 JRNL DOI 10.1016/J.JMB.2011.04.051 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0099 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.92 REMARK 3 NUMBER OF REFLECTIONS : 15732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17740 REMARK 3 R VALUE (WORKING SET) : 0.17505 REMARK 3 FREE R VALUE : 0.22311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 828 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.796 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.843 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1151 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.272 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.326 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1421 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.531 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63 REMARK 3 B22 (A**2) : -0.04 REMARK 3 B33 (A**2) : -0.28 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.27 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.874 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1452 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1968 ; 1.207 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 174 ; 5.122 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;34.691 ;23.492 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 262 ;13.431 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.193 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 226 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1077 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 886 ; 0.553 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1450 ; 1.080 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 566 ; 1.931 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 518 ; 3.252 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 96 REMARK 3 RESIDUE RANGE : A 1097 A 1098 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6892 19.3936 20.6939 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.0453 REMARK 3 T33: 0.0899 T12: 0.0116 REMARK 3 T13: -0.0064 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.9461 L22: 1.7046 REMARK 3 L33: 5.4742 L12: 0.5744 REMARK 3 L13: -1.0937 L23: -1.5071 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: -0.2317 S13: 0.0687 REMARK 3 S21: 0.1549 S22: -0.0419 S23: -0.0644 REMARK 3 S31: -0.0898 S32: 0.2774 S33: -0.0315 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 95 REMARK 3 RESIDUE RANGE : B 1096 B 1097 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4471 6.9273 18.9458 REMARK 3 T TENSOR REMARK 3 T11: 0.0892 T22: 0.0372 REMARK 3 T33: 0.0869 T12: -0.0310 REMARK 3 T13: 0.0037 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 3.4557 L22: 1.6256 REMARK 3 L33: 5.9477 L12: -0.1887 REMARK 3 L13: 1.0019 L23: -0.1569 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.1749 S13: -0.1509 REMARK 3 S21: -0.0224 S22: 0.1254 S23: 0.1227 REMARK 3 S31: 0.5333 S32: -0.3865 S33: -0.1356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2Y43 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JAN-11. REMARK 100 THE PDBE ID CODE IS EBI-46878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2828 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.80 REMARK 200 RESOLUTION RANGE LOW (A) : 42.84 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.3 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.8 REMARK 200 R MERGE FOR SHELL (I) : 0.62 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 100 MM AMMONIUM REMARK 280 ACETATE, 100 MM BIS-TRIS PH 5.5 . REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.32300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.67850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.32300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.67850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 465 LEU A 97 REMARK 465 GLU A 98 REMARK 465 SER A 99 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 96 REMARK 465 LEU B 97 REMARK 465 GLU B 98 REMARK 465 SER B 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 96 CA C O CB REMARK 470 PHE B 95 CA C O CB CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 75 78.30 -116.48 REMARK 500 TYR B 56 -60.79 -97.54 REMARK 500 ASN B 75 78.35 -111.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1097 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 41 SG REMARK 620 2 HIS A 43 ND1 105.8 REMARK 620 3 CYS A 63 SG 107.6 113.5 REMARK 620 4 CYS A 60 SG 114.3 105.3 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1097 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 28 SG REMARK 620 2 CYS B 49 SG 107.3 REMARK 620 3 CYS B 25 SG 110.0 119.6 REMARK 620 4 CYS B 46 SG 103.0 112.5 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1098 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 CYS A 25 SG 103.4 REMARK 620 3 CYS A 28 SG 109.0 109.6 REMARK 620 4 CYS A 49 SG 109.9 117.2 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1096 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 60 SG REMARK 620 2 CYS B 41 SG 113.9 REMARK 620 3 CYS B 63 SG 108.6 107.4 REMARK 620 4 HIS B 43 ND1 106.2 106.7 114.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1097 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1098 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1096 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1097 DBREF 2Y43 A 1 99 UNP Q9NS91 RAD18_HUMAN 1 99 DBREF 2Y43 B 1 99 UNP Q9NS91 RAD18_HUMAN 1 99 SEQRES 1 A 99 MET ASP SER LEU ALA GLU SER ARG TRP PRO PRO GLY LEU SEQRES 2 A 99 ALA VAL MET LYS THR ILE ASP ASP LEU LEU ARG CYS GLY SEQRES 3 A 99 ILE CYS PHE GLU TYR PHE ASN ILE ALA MET ILE ILE PRO SEQRES 4 A 99 GLN CYS SER HIS ASN TYR CYS SER LEU CYS ILE ARG LYS SEQRES 5 A 99 PHE LEU SER TYR LYS THR GLN CYS PRO THR CYS CYS VAL SEQRES 6 A 99 THR VAL THR GLU PRO ASP LEU LYS ASN ASN ARG ILE LEU SEQRES 7 A 99 ASP GLU LEU VAL LYS SER LEU ASN PHE ALA ARG ASN HIS SEQRES 8 A 99 LEU LEU GLN PHE ALA LEU GLU SER SEQRES 1 B 99 MET ASP SER LEU ALA GLU SER ARG TRP PRO PRO GLY LEU SEQRES 2 B 99 ALA VAL MET LYS THR ILE ASP ASP LEU LEU ARG CYS GLY SEQRES 3 B 99 ILE CYS PHE GLU TYR PHE ASN ILE ALA MET ILE ILE PRO SEQRES 4 B 99 GLN CYS SER HIS ASN TYR CYS SER LEU CYS ILE ARG LYS SEQRES 5 B 99 PHE LEU SER TYR LYS THR GLN CYS PRO THR CYS CYS VAL SEQRES 6 B 99 THR VAL THR GLU PRO ASP LEU LYS ASN ASN ARG ILE LEU SEQRES 7 B 99 ASP GLU LEU VAL LYS SER LEU ASN PHE ALA ARG ASN HIS SEQRES 8 B 99 LEU LEU GLN PHE ALA LEU GLU SER HET ZN A1097 1 HET ZN A1098 1 HET ZN B1096 1 HET ZN B1097 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 4 HOH *102(H2 O) HELIX 1 1 PRO A 10 VAL A 15 5 6 HELIX 2 2 MET A 16 LEU A 23 1 8 HELIX 3 3 SER A 47 SER A 55 1 9 HELIX 4 4 THR A 68 LEU A 72 5 5 HELIX 5 5 ASN A 75 HIS A 91 1 17 HELIX 6 6 LEU B 13 VAL B 15 5 3 HELIX 7 7 MET B 16 LEU B 23 1 8 HELIX 8 8 SER B 47 SER B 55 1 9 HELIX 9 9 THR B 68 LEU B 72 5 5 HELIX 10 10 ASN B 75 GLN B 94 1 20 SHEET 1 AA 3 ASN A 44 CYS A 46 0 SHEET 2 AA 3 ALA A 35 ILE A 37 -1 O MET A 36 N TYR A 45 SHEET 3 AA 3 LYS A 73 ASN A 74 -1 O LYS A 73 N ILE A 37 SHEET 1 BA 3 ASN B 44 CYS B 46 0 SHEET 2 BA 3 ALA B 35 ILE B 37 -1 O MET B 36 N TYR B 45 SHEET 3 BA 3 LYS B 73 ASN B 74 -1 O LYS B 73 N ILE B 37 LINK ZN ZN A1097 SG CYS A 41 1555 1555 2.32 LINK ZN ZN A1097 ND1 HIS A 43 1555 1555 2.08 LINK ZN ZN A1097 SG CYS A 63 1555 1555 2.35 LINK ZN ZN A1097 SG CYS A 60 1555 1555 2.28 LINK ZN ZN A1098 SG CYS A 46 1555 1555 2.40 LINK ZN ZN A1098 SG CYS A 49 1555 1555 2.36 LINK ZN ZN A1098 SG CYS A 28 1555 1555 2.25 LINK ZN ZN A1098 SG CYS A 25 1555 1555 2.32 LINK ZN ZN B1096 SG CYS B 60 1555 1555 2.35 LINK ZN ZN B1096 SG CYS B 41 1555 1555 2.33 LINK ZN ZN B1096 SG CYS B 63 1555 1555 2.29 LINK ZN ZN B1096 ND1 HIS B 43 1555 1555 2.00 LINK ZN ZN B1097 SG CYS B 46 1555 1555 2.37 LINK ZN ZN B1097 SG CYS B 25 1555 1555 2.39 LINK ZN ZN B1097 SG CYS B 49 1555 1555 2.29 LINK ZN ZN B1097 SG CYS B 28 1555 1555 2.40 SITE 1 AC1 4 CYS A 41 HIS A 43 CYS A 60 CYS A 63 SITE 1 AC2 4 CYS A 25 CYS A 28 CYS A 46 CYS A 49 SITE 1 AC3 4 CYS B 41 HIS B 43 CYS B 60 CYS B 63 SITE 1 AC4 4 CYS B 25 CYS B 28 CYS B 46 CYS B 49 CRYST1 104.646 29.357 69.736 90.00 125.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009556 0.000000 0.006704 0.00000 SCALE2 0.000000 0.034063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017516 0.00000