PDB Short entry for 2Y9T HEADER APOPTOSIS 16-FEB-11 2Y9T TITLE STRUCTURAL BASIS OF P63A SAM DOMAIN MUTANTS INVOLVED IN AEC SYNDROME COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR PROTEIN 63; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM DOMAIN, RESIDUES 543-622; COMPND 5 SYNONYM: CHRONIC ULCERATIVE STOMATITIS PROTEIN, KERATINOCYTE COMPND 6 TRANSCRIPTION FACTOR KET, TRANSFORMATION-RELATED PROTEIN 63, TUMOR COMPND 7 PROTEIN P73-LIKE, P40, P51, P63, CUSP, TP63, P73L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: MODIFIED PRSETA KEYWDS APOPTOSIS, STERILE ALPHA MOTIF, 5-HELIX BUNDLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.SATHYAMURTHY,S.M.V.FREUND,C.M.JOHNSON,M.D.ALLEN REVDAT 3 14-JUN-23 2Y9T 1 REMARK REVDAT 2 24-JAN-18 2Y9T 1 SOURCE REVDAT 1 03-AUG-11 2Y9T 0 JRNL AUTH A.SATHYAMURTHY,S.M.V.FREUND,C.M.JOHNSON,M.D.ALLEN,M.BYCROFT JRNL TITL STRUCTURAL BASIS OF P63ALPHA SAM DOMAIN MUTANTS INVOLVED IN JRNL TITL 2 AEC SYNDROME. JRNL REF FEBS J. V. 278 2680 2011 JRNL REFN ISSN 1742-464X JRNL PMID 21615690 JRNL DOI 10.1111/J.1742-4658.2011.08194.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Y9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1290047391. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, CNS REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS > 0.25A REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 542 80.66 60.43 REMARK 500 1 TYR A 543 156.39 60.96 REMARK 500 1 ASP A 546 -78.67 -113.49 REMARK 500 1 CYS A 558 45.07 -151.17 REMARK 500 1 LYS A 588 17.28 101.16 REMARK 500 1 SER A 614 82.61 59.20 REMARK 500 1 HIS A 615 -64.56 -157.29 REMARK 500 2 CYS A 558 44.27 -148.41 REMARK 500 2 LYS A 588 24.87 85.31 REMARK 500 2 GLU A 609 75.71 -115.04 REMARK 500 2 SER A 611 35.78 -168.72 REMARK 500 2 PRO A 613 174.75 -50.19 REMARK 500 2 SER A 614 168.03 60.92 REMARK 500 3 CYS A 558 42.04 -143.76 REMARK 500 3 LYS A 588 19.52 94.10 REMARK 500 3 GLU A 609 106.49 60.13 REMARK 500 3 HIS A 615 75.18 60.18 REMARK 500 3 LEU A 617 -46.83 -151.53 REMARK 500 4 THR A 545 -84.50 -128.75 REMARK 500 4 CYS A 558 43.89 -147.05 REMARK 500 4 LYS A 588 20.32 100.39 REMARK 500 4 SER A 612 87.84 60.71 REMARK 500 4 PRO A 613 109.39 -51.78 REMARK 500 4 HIS A 615 -55.01 -122.68 REMARK 500 5 SER A 542 103.04 60.37 REMARK 500 5 LYS A 588 17.20 101.53 REMARK 500 5 GLU A 609 73.95 55.03 REMARK 500 5 PHE A 610 106.11 59.14 REMARK 500 5 SER A 614 -169.34 -168.81 REMARK 500 6 THR A 545 -19.05 84.07 REMARK 500 6 ASP A 546 164.70 58.20 REMARK 500 6 CYS A 558 48.86 -151.15 REMARK 500 6 LYS A 588 14.90 95.99 REMARK 500 6 GLU A 609 129.27 65.36 REMARK 500 6 SER A 612 81.15 62.84 REMARK 500 6 LEU A 616 38.59 -169.94 REMARK 500 6 LEU A 617 102.12 -161.00 REMARK 500 6 ARG A 618 91.13 -164.33 REMARK 500 6 THR A 619 56.78 -144.87 REMARK 500 7 TYR A 543 154.42 61.50 REMARK 500 7 CYS A 558 41.11 -147.46 REMARK 500 7 LYS A 588 19.99 101.22 REMARK 500 7 SER A 612 108.12 -161.51 REMARK 500 7 LEU A 617 111.18 60.70 REMARK 500 7 THR A 619 79.67 48.30 REMARK 500 8 ASP A 546 179.39 60.38 REMARK 500 8 CYS A 558 43.38 -144.68 REMARK 500 8 LYS A 588 26.75 87.96 REMARK 500 8 GLU A 609 86.19 -62.69 REMARK 500 8 PHE A 610 99.03 60.29 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RG6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF P63 REMARK 900 RELATED ID: 2Y9U RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF P63A SAM DOMAIN MUTANTS INVOLVED IN AEC SYNDROME REMARK 900 RELATED ID: 17475 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 GLY AND SER AND THE N-TERMINUS ARE FROM THE FUSION TAG DBREF 2Y9T A 543 622 UNP Q9H3D4 P63_HUMAN 543 622 SEQADV 2Y9T GLY A 541 UNP Q9H3D4 EXPRESSION TAG SEQADV 2Y9T SER A 542 UNP Q9H3D4 EXPRESSION TAG SEQRES 1 A 82 GLY SER TYR PRO THR ASP CYS SER ILE VAL SER PHE LEU SEQRES 2 A 82 ALA ARG LEU GLY CYS SER SER CYS LEU ASP TYR PHE THR SEQRES 3 A 82 THR GLN GLY LEU THR THR ILE TYR GLN ILE GLU HIS TYR SEQRES 4 A 82 SER MET ASP ASP LEU ALA SER LEU LYS ILE PRO GLU GLN SEQRES 5 A 82 PHE ARG HIS ALA ILE TRP LYS GLY ILE LEU ASP HIS ARG SEQRES 6 A 82 GLN LEU HIS GLU PHE SER SER PRO SER HIS LEU LEU ARG SEQRES 7 A 82 THR PRO SER SER HELIX 1 1 SER A 548 GLY A 557 1 10 HELIX 2 2 CYS A 558 SER A 560 5 3 HELIX 3 3 CYS A 561 THR A 567 1 7 HELIX 4 4 ILE A 573 GLU A 577 5 5 HELIX 5 5 SER A 580 LEU A 587 1 8 HELIX 6 6 PRO A 590 GLU A 609 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000