PDB Short entry for 2YDW HEADER NUCLEAR PROTEIN 24-MAR-11 2YDW TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD2 WITH THE TITLE 2 INHIBITOR GW841819X COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: N-TERMINAL BROMODOMAIN, RESIDUES 67-200; COMPND 5 SYNONYM: O27.1.1, REALLY INTERESTING NEW GENE 3 PROTEIN, HUMAN BRD2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR PROTEIN, HISTONE, EPIGENETIC READER EXPDTA X-RAY DIFFRACTION AUTHOR C.CHUNG,C.DELVES,R.WOODWARD,O.MIRGUET,E.NICODEME REVDAT 2 21-NOV-12 2YDW 1 REMARK VERSN SEQADV REVDAT 1 15-JUN-11 2YDW 0 JRNL AUTH C.W.CHUNG,H.COSTE,J.H.WHITE,O.MIRGUET,J.WILDE,R.L.GOSMINI, JRNL AUTH 2 C.DELVES,S.M.MAGNY,R.WOODWARD,S.A.HUGHES,E.V.BOURSIER, JRNL AUTH 3 H.FLYNN,A.M.BOUILLOT,P.BAMBOROUGH,J.M.BRUSQ,F.J.GELLIBERT, JRNL AUTH 4 E.J.JONES,A.M.RIOU,P.HOMES,S.L.MARTIN,I.J.UINGS,J.TOUM, JRNL AUTH 5 C.A.CLEMENT,A.B.BOULLAY,R.L.GRIMLEY,F.M.BLANDEL,R.K.PRINJHA, JRNL AUTH 6 K.LEE,J.KIRILOVSKY,E.NICODEME JRNL TITL DISCOVERY AND CHARACTERIZATION OF SMALL MOLECULE INHIBITORS JRNL TITL 2 OF THE BET FAMILY BROMODOMAINS. JRNL REF J.MED.CHEM. V. 54 3827 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21568322 JRNL DOI 10.1021/JM200108T REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 32436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20247 REMARK 3 R VALUE (WORKING SET) : 0.19995 REMARK 3 FREE R VALUE : 0.24959 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1730 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.900 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.949 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2172 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.249 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.285 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2673 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.229 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67 REMARK 3 B22 (A**2) : -0.51 REMARK 3 B33 (A**2) : -0.17 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.04 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.300 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2861 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1936 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3878 ; 1.101 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4718 ; 0.795 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 4.400 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;36.276 ;24.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 504 ;12.643 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;21.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3226 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 630 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1610 ; 0.666 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 625 ; 0.102 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2622 ; 1.279 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1251 ; 1.621 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1256 ; 2.592 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3730 6.4193 1.1001 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0263 REMARK 3 T33: 0.0627 T12: -0.0044 REMARK 3 T13: 0.0297 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.8495 L22: 1.0620 REMARK 3 L33: 1.1807 L12: -0.4020 REMARK 3 L13: 0.0088 L23: 0.2385 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.0034 S13: -0.0209 REMARK 3 S21: 0.0363 S22: -0.0419 S23: 0.1696 REMARK 3 S31: 0.0494 S32: -0.0481 S33: 0.0578 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 77 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8684 18.3760 23.2296 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1190 REMARK 3 T33: 0.0325 T12: -0.0528 REMARK 3 T13: 0.0081 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.8094 L22: 3.5151 REMARK 3 L33: 2.5318 L12: -0.3468 REMARK 3 L13: 1.2406 L23: -0.0588 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: 0.0767 S13: -0.0696 REMARK 3 S21: -0.4831 S22: 0.2709 S23: -0.0398 REMARK 3 S31: -0.0889 S32: 0.1543 S33: -0.2103 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 76 C 182 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0377 7.7731 10.3291 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.0147 REMARK 3 T33: 0.0377 T12: -0.0181 REMARK 3 T13: -0.0156 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.0246 L22: 1.3049 REMARK 3 L33: 0.9687 L12: -0.4677 REMARK 3 L13: -0.1323 L23: -0.0768 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: -0.0292 S13: -0.0096 REMARK 3 S21: 0.1833 S22: -0.0193 S23: -0.1171 REMARK 3 S31: -0.1038 S32: 0.0473 S33: 0.0047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2YDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-11. REMARK 100 THE PDBE ID CODE IS EBI-47812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34166 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 67.26 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.5 REMARK 200 R MERGE FOR SHELL (I) : 0.44 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1E6I REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.2 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5% PEG 3350, 0.2 M (NH4)2SO4, REMARK 280 0.1 M BIS TRIS PH 5.5. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.68600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.00650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.68600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.00650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -4.67985 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.26239 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2076 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 SER A 49 REMARK 465 HIS A 50 REMARK 465 HIS A 51 REMARK 465 HIS A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 SER A 56 REMARK 465 SER A 57 REMARK 465 GLY A 58 REMARK 465 LEU A 59 REMARK 465 VAL A 60 REMARK 465 PRO A 61 REMARK 465 ARG A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 HIS A 65 REMARK 465 MET A 66 REMARK 465 SER A 67 REMARK 465 ASN A 68 REMARK 465 PRO A 69 REMARK 465 LYS A 70 REMARK 465 LYS A 71 REMARK 465 PRO A 72 REMARK 465 GLY A 73 REMARK 465 ARG A 74 REMARK 465 VAL A 75 REMARK 465 GLU A 183 REMARK 465 GLU A 184 REMARK 465 GLN A 185 REMARK 465 GLU A 186 REMARK 465 LEU A 187 REMARK 465 VAL A 188 REMARK 465 VAL A 189 REMARK 465 THR A 190 REMARK 465 ILE A 191 REMARK 465 PRO A 192 REMARK 465 ASN A 193 REMARK 465 SER A 194 REMARK 465 HIS A 195 REMARK 465 LYS A 196 REMARK 465 LYS A 197 REMARK 465 GLY A 198 REMARK 465 ALA A 199 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 SER B 49 REMARK 465 HIS B 50 REMARK 465 HIS B 51 REMARK 465 HIS B 52 REMARK 465 HIS B 53 REMARK 465 HIS B 54 REMARK 465 HIS B 55 REMARK 465 SER B 56 REMARK 465 SER B 57 REMARK 465 GLY B 58 REMARK 465 LEU B 59 REMARK 465 VAL B 60 REMARK 465 PRO B 61 REMARK 465 ARG B 62 REMARK 465 GLY B 63 REMARK 465 SER B 64 REMARK 465 HIS B 65 REMARK 465 MET B 66 REMARK 465 SER B 67 REMARK 465 ASN B 68 REMARK 465 PRO B 69 REMARK 465 LYS B 70 REMARK 465 LYS B 71 REMARK 465 PRO B 72 REMARK 465 GLY B 73 REMARK 465 ARG B 74 REMARK 465 VAL B 75 REMARK 465 THR B 76 REMARK 465 GLN B 182 REMARK 465 GLU B 183 REMARK 465 GLU B 184 REMARK 465 GLN B 185 REMARK 465 GLU B 186 REMARK 465 LEU B 187 REMARK 465 VAL B 188 REMARK 465 VAL B 189 REMARK 465 THR B 190 REMARK 465 ILE B 191 REMARK 465 PRO B 192 REMARK 465 ASN B 193 REMARK 465 SER B 194 REMARK 465 HIS B 195 REMARK 465 LYS B 196 REMARK 465 LYS B 197 REMARK 465 GLY B 198 REMARK 465 ALA B 199 REMARK 465 GLY C 47 REMARK 465 SER C 48 REMARK 465 SER C 49 REMARK 465 HIS C 50 REMARK 465 HIS C 51 REMARK 465 HIS C 52 REMARK 465 HIS C 53 REMARK 465 HIS C 54 REMARK 465 HIS C 55 REMARK 465 SER C 56 REMARK 465 SER C 57 REMARK 465 GLY C 58 REMARK 465 LEU C 59 REMARK 465 VAL C 60 REMARK 465 PRO C 61 REMARK 465 ARG C 62 REMARK 465 GLY C 63 REMARK 465 SER C 64 REMARK 465 HIS C 65 REMARK 465 MET C 66 REMARK 465 SER C 67 REMARK 465 ASN C 68 REMARK 465 PRO C 69 REMARK 465 LYS C 70 REMARK 465 LYS C 71 REMARK 465 PRO C 72 REMARK 465 GLY C 73 REMARK 465 ARG C 74 REMARK 465 VAL C 75 REMARK 465 GLU C 183 REMARK 465 GLU C 184 REMARK 465 GLN C 185 REMARK 465 GLU C 186 REMARK 465 LEU C 187 REMARK 465 VAL C 188 REMARK 465 VAL C 189 REMARK 465 THR C 190 REMARK 465 ILE C 191 REMARK 465 PRO C 192 REMARK 465 ASN C 193 REMARK 465 SER C 194 REMARK 465 HIS C 195 REMARK 465 LYS C 196 REMARK 465 LYS C 197 REMARK 465 GLY C 198 REMARK 465 ALA C 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 77 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 182 O HOH C 2100 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 110 78.18 -113.15 REMARK 500 LEU C 110 73.24 -117.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 181 GLN A 182 148.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WSH A1183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WSH B1182 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WSH C1183 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1183 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X0J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE N-TERMINAL BROMODOMAIN REMARK 900 OFHUMAN BRD2 DBREF 2YDW A 67 199 UNP P25440 BRD2_HUMAN 67 200 DBREF 2YDW B 67 199 UNP P25440 BRD2_HUMAN 67 200 DBREF 2YDW C 67 199 UNP P25440 BRD2_HUMAN 67 200 SEQADV 2YDW GLY A 47 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER A 48 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER A 49 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS A 50 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS A 51 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS A 52 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS A 53 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS A 54 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS A 55 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER A 56 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER A 57 UNP P25440 EXPRESSION TAG SEQADV 2YDW GLY A 58 UNP P25440 EXPRESSION TAG SEQADV 2YDW LEU A 59 UNP P25440 EXPRESSION TAG SEQADV 2YDW VAL A 60 UNP P25440 EXPRESSION TAG SEQADV 2YDW PRO A 61 UNP P25440 EXPRESSION TAG SEQADV 2YDW ARG A 62 UNP P25440 EXPRESSION TAG SEQADV 2YDW GLY A 63 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER A 64 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS A 65 UNP P25440 EXPRESSION TAG SEQADV 2YDW MET A 66 UNP P25440 EXPRESSION TAG SEQADV 2YDW A UNP P25440 LYS 193 DELETION SEQADV 2YDW GLY B 47 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER B 48 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER B 49 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS B 50 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS B 51 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS B 52 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS B 53 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS B 54 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS B 55 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER B 56 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER B 57 UNP P25440 EXPRESSION TAG SEQADV 2YDW GLY B 58 UNP P25440 EXPRESSION TAG SEQADV 2YDW LEU B 59 UNP P25440 EXPRESSION TAG SEQADV 2YDW VAL B 60 UNP P25440 EXPRESSION TAG SEQADV 2YDW PRO B 61 UNP P25440 EXPRESSION TAG SEQADV 2YDW ARG B 62 UNP P25440 EXPRESSION TAG SEQADV 2YDW GLY B 63 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER B 64 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS B 65 UNP P25440 EXPRESSION TAG SEQADV 2YDW MET B 66 UNP P25440 EXPRESSION TAG SEQADV 2YDW B UNP P25440 LYS 193 DELETION SEQADV 2YDW GLY C 47 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER C 48 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER C 49 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS C 50 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS C 51 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS C 52 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS C 53 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS C 54 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS C 55 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER C 56 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER C 57 UNP P25440 EXPRESSION TAG SEQADV 2YDW GLY C 58 UNP P25440 EXPRESSION TAG SEQADV 2YDW LEU C 59 UNP P25440 EXPRESSION TAG SEQADV 2YDW VAL C 60 UNP P25440 EXPRESSION TAG SEQADV 2YDW PRO C 61 UNP P25440 EXPRESSION TAG SEQADV 2YDW ARG C 62 UNP P25440 EXPRESSION TAG SEQADV 2YDW GLY C 63 UNP P25440 EXPRESSION TAG SEQADV 2YDW SER C 64 UNP P25440 EXPRESSION TAG SEQADV 2YDW HIS C 65 UNP P25440 EXPRESSION TAG SEQADV 2YDW MET C 66 UNP P25440 EXPRESSION TAG SEQADV 2YDW C UNP P25440 LYS 193 DELETION SEQRES 1 A 153 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 153 VAL PRO ARG GLY SER HIS MET SER ASN PRO LYS LYS PRO SEQRES 3 A 153 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 4 A 153 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 5 A 153 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 6 A 153 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 7 A 153 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 8 A 153 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 9 A 153 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 10 A 153 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 11 A 153 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 12 A 153 THR ILE PRO ASN SER HIS LYS LYS GLY ALA SEQRES 1 B 153 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 B 153 VAL PRO ARG GLY SER HIS MET SER ASN PRO LYS LYS PRO SEQRES 3 B 153 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 4 B 153 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 5 B 153 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 6 B 153 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 7 B 153 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 8 B 153 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 9 B 153 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 10 B 153 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 11 B 153 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 12 B 153 THR ILE PRO ASN SER HIS LYS LYS GLY ALA SEQRES 1 C 153 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 C 153 VAL PRO ARG GLY SER HIS MET SER ASN PRO LYS LYS PRO SEQRES 3 C 153 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 4 C 153 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 5 C 153 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 6 C 153 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 7 C 153 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 8 C 153 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 9 C 153 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 10 C 153 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 11 C 153 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 12 C 153 THR ILE PRO ASN SER HIS LYS LYS GLY ALA HET WSH A1183 32 HET WSH B1182 32 HET SO4 B1183 5 HET WSH C1183 32 HETNAM WSH BENZYL [(4R)-1-METHYL-6-PHENYL-4H-[1,2,4]TRIAZOLO HETNAM 2 WSH [4,3-A][1,4]BENZODIAZEPIN-4-YL]CARBAMATE HETNAM SO4 SULFATE ION FORMUL 4 WSH 3(C25 H21 N5 O2) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *306(H2 O) HELIX 1 1 THR A 76 VAL A 85 1 10 HELIX 2 2 VAL A 85 LYS A 92 1 8 HELIX 3 3 ALA A 96 ARG A 100 5 5 HELIX 4 4 ASP A 104 GLY A 109 1 6 HELIX 5 5 ASP A 112 ILE A 117 1 6 HELIX 6 6 ASP A 122 ASN A 132 1 11 HELIX 7 7 ALA A 137 ASN A 156 1 20 HELIX 8 8 ASP A 160 ALA A 178 1 19 HELIX 9 9 ASN B 77 VAL B 85 1 9 HELIX 10 10 VAL B 85 HIS B 93 1 9 HELIX 11 11 ALA B 96 ARG B 100 5 5 HELIX 12 12 ASP B 104 GLY B 109 1 6 HELIX 13 13 ASP B 112 ILE B 117 1 6 HELIX 14 14 ASP B 122 ASN B 132 1 11 HELIX 15 15 ALA B 137 ASN B 156 1 20 HELIX 16 16 ASP B 160 ALA B 178 1 19 HELIX 17 17 ASN C 77 VAL C 85 1 9 HELIX 18 18 VAL C 85 HIS C 93 1 9 HELIX 19 19 ALA C 96 ARG C 100 5 5 HELIX 20 20 ASP C 104 GLY C 109 1 6 HELIX 21 21 ASP C 112 ILE C 117 1 6 HELIX 22 22 ASP C 122 ASN C 132 1 11 HELIX 23 23 ALA C 137 ASN C 156 1 20 HELIX 24 24 ASP C 160 ALA C 178 1 19 SITE 1 AC1 12 TRP A 97 PRO A 98 VAL A 103 LEU A 110 SITE 2 AC1 12 TYR A 155 ASN A 156 ILE A 162 HOH A2043 SITE 3 AC1 12 HOH A2095 HOH A2096 HOH A2123 GLN C 94 SITE 1 AC2 10 TRP B 97 PRO B 98 VAL B 103 LEU B 110 SITE 2 AC2 10 TYR B 155 ASN B 156 ILE B 162 HOH B2026 SITE 3 AC2 10 HOH B2062 HOH B2066 SITE 1 AC3 9 PRO C 98 LEU C 110 TYR C 155 ASN C 156 SITE 2 AC3 9 LYS C 157 ASP C 160 ILE C 162 HOH C2037 SITE 3 AC3 9 HOH C2103 SITE 1 AC4 7 ARG B 128 ASN B 132 TYR B 134 HOH B2043 SITE 2 AC4 7 HOH B2079 HOH B2080 ARG C 100 CRYST1 117.372 56.013 67.425 90.00 93.98 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008520 0.000000 0.000593 0.00000 SCALE2 0.000000 0.017853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014867 0.00000