PDB Short entry for 2YJD HEADER HORMONE RECEPTOR/PEPTIDE 19-MAY-11 2YJD TITLE STAPLED PEPTIDE BOUND TO ESTROGEN RECEPTOR BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, RESIDUES 261-500; COMPND 5 SYNONYM: ER-BETA, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: STAPLED PEPTIDE; COMPND 9 CHAIN: C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS HORMONE RECEPTOR-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.PHILLIPS,L.R.ROBERTS,M.SCHADE,A.BENT,N.L.DAVIES,R.MOORE, AUTHOR 2 A.D.PANNIFER,D.G.BROWN,A.R.PICKFORD,S.L.IRVING REVDAT 2 25-JAN-17 2YJD 1 REMARK HETATM ATOM REVDAT 1 03-AUG-11 2YJD 0 JRNL AUTH C.PHILLIPS,L.R.ROBERTS,M.SCHADE,R.BAZIN,A.BENT,N.L.DAVIES, JRNL AUTH 2 R.MOORE,A.D.PANNIFER,A.R.PICKFORD,S.H.PRIOR,C.M.READ, JRNL AUTH 3 A.SCOTT,D.G.BROWN,B.XU,S.L.IRVING JRNL TITL DESIGN AND STRUCTURE OF STAPLED PEPTIDES BINDING TO JRNL TITL 2 ESTROGEN RECEPTORS. JRNL REF J.AM.CHEM.SOC. V. 133 9696 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21612236 JRNL DOI 10.1021/JA202946K REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.87 REMARK 3 NUMBER OF REFLECTIONS : 38555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.2264 REMARK 3 R VALUE (WORKING SET) : 0.2246 REMARK 3 FREE R VALUE : 0.2602 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.04 REMARK 3 FREE R VALUE TEST SET COUNT : 1944 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2448 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2711 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2326 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE : 0.3115 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 122 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.6420 REMARK 3 B22 (A**2) : -3.6420 REMARK 3 B33 (A**2) : 7.2840 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.299 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.181 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.160 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.182 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.162 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.9083 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.8857 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3824 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 5168 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 1300 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 118 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 536 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3824 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 486 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4611 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.43 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.28 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT REMARK 3 SETUP. ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. REMARK 4 REMARK 4 2YJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-11. REMARK 100 THE PDBE ID CODE IS EBI-48343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38555 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.93 REMARK 200 RESOLUTION RANGE LOW (A) : 13.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 12 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.31000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.31000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.31000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.31000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 51.31000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.31000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.31000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 51.31000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 51.31000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.31000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 261 REMARK 465 ALA A 262 REMARK 465 MET A 410 REMARK 465 TYR A 411 REMARK 465 PRO A 412 REMARK 465 LEU A 413 REMARK 465 VAL A 414 REMARK 465 THR A 415 REMARK 465 ALA A 416 REMARK 465 THR A 417 REMARK 465 GLN A 418 REMARK 465 ASP A 419 REMARK 465 ALA A 420 REMARK 465 ASP A 421 REMARK 465 HIS A 498 REMARK 465 VAL A 499 REMARK 465 LEU A 500 REMARK 465 ASP B 261 REMARK 465 ALA B 262 REMARK 465 MET B 410 REMARK 465 TYR B 411 REMARK 465 PRO B 412 REMARK 465 LEU B 413 REMARK 465 VAL B 414 REMARK 465 THR B 415 REMARK 465 ALA B 416 REMARK 465 THR B 417 REMARK 465 GLN B 418 REMARK 465 ASP B 419 REMARK 465 ALA B 420 REMARK 465 ASP B 421 REMARK 465 HIS B 498 REMARK 465 VAL B 499 REMARK 465 LEU B 500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE C 3 CB - CA - C ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 283 92.57 62.44 REMARK 500 SER A 286 129.91 -35.17 REMARK 500 HIS A 350 78.70 -114.95 REMARK 500 ASP A 489 -80.10 -25.72 REMARK 500 GLU B 276 118.05 -38.98 REMARK 500 SER B 283 111.73 64.18 REMARK 500 SER B 286 -128.02 64.24 REMARK 500 ALA B 287 133.29 64.77 REMARK 500 CYS B 369 -70.15 -60.88 REMARK 500 SER B 447 151.83 -49.53 REMARK 500 VAL B 487 108.95 -57.61 REMARK 500 ASP B 489 -94.44 -100.94 REMARK 500 ASN B 496 -91.41 -68.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 10 SER C 11 96.88 REMARK 500 LEU D 8 GLN D 9 -149.39 REMARK 500 GLN D 9 ASP D 10 -136.28 REMARK 500 ASP D 10 SER D 11 117.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 271 23.2 L L OUTSIDE RANGE REMARK 500 ILE B 282 24.3 L L OUTSIDE RANGE REMARK 500 PHE B 289 23.4 L L OUTSIDE RANGE REMARK 500 HIS C 1 24.1 L L OUTSIDE RANGE REMARK 500 ILE C 3 24.3 L L OUTSIDE RANGE REMARK 500 SER C 11 24.3 L L OUTSIDE RANGE REMARK 500 HIS D 1 23.4 L L OUTSIDE RANGE REMARK 500 HIS D 5 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YJD A1498 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YJD B1498 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YLY RELATED DB: PDB REMARK 900 SULFONAMIDES AS SELECTIVE ESTROGEN RECEPTOR BETA AGONISTS. REMARK 900 RELATED ID: 1L2J RELATED DB: PDB REMARK 900 HUMAN ESTROGEN RECEPTOR BETA LIGAND-BINDING DOMAIN REMARK 900 INCOMPLEX WITH (R,R)-5,11-CIS-DIETHYL-5,6,11,12 REMARK 900 -TETRAHYDROCHRYSENE-2,8-DIOL REMARK 900 RELATED ID: 2FSZ RELATED DB: PDB REMARK 900 A SECOND BINDING SITE FOR HYDROXYTAMOXIFEN WITHIN REMARK 900 THECOACTIVATOR-BINDING GROOVE OF ESTROGEN RECEPTOR BETA REMARK 900 RELATED ID: 1X7B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITHERB-041 REMARK 900 RELATED ID: 1X76 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITHWAY-697 REMARK 900 RELATED ID: 1NDE RELATED DB: PDB REMARK 900 ESTROGEN RECEPTOR BETA WITH SELECTIVE TRIAZINE MODULATOR REMARK 900 RELATED ID: 2JJ3 RELATED DB: PDB REMARK 900 ESTROGEN RECEPTOR BETA LIGAND BINDING DOMAIN IN COMPLEX REMARK 900 WITH A BENZOPYRAN AGONIST REMARK 900 RELATED ID: 1YY4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITH1-CHLORO-6-(4-HYDROXY-PHENYL)-NAPHTHALEN-2-OL REMARK 900 RELATED ID: 1U3S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITHWAY-797 REMARK 900 RELATED ID: 1X78 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITHWAY-244 REMARK 900 RELATED ID: 1QKM RELATED DB: PDB REMARK 900 HUMAN OESTROGEN RECEPTOR BETA LIGAND-BINDING DOMAIN IN REMARK 900 COMPLEX WITH PARTIAL AGONIST GENISTEIN REMARK 900 RELATED ID: 1U3R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITHWAY-338 REMARK 900 RELATED ID: 1X7J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITHGENISTEIN REMARK 900 RELATED ID: 1U9E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITHWAY-397 REMARK 900 RELATED ID: 1YYE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITHWAY-202196 REMARK 900 RELATED ID: 1U3Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED REMARK 900 WITHCL-272 REMARK 900 RELATED ID: 2YJA RELATED DB: PDB REMARK 900 STAPLED PEPTIDES BINDING TO ESTROGEN RECEPTOR ALPHA. REMARK 900 RELATED ID: 2LDD RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ESTROGEN RECEPTOR-BINDING REMARK 900 STAPLED PEPTIDE SP6 (AC-EKHKILXRLLXDS-NH2) REMARK 900 RELATED ID: 2LDA RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ESTROGEN RECEPTOR-BINDING REMARK 900 STAPLED PEPTIDE SP2 (AC-HKXLHQXLQDS-NH2) REMARK 900 RELATED ID: 2LDC RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ESTROGEN RECEPTOR-BINDING REMARK 900 STAPLED PEPTIDE SP1 (AC-HXILHXLLQDS-NH2) DBREF 2YJD A 261 500 UNP Q92731 ESR2_HUMAN 261 500 DBREF 2YJD B 261 500 UNP Q92731 ESR2_HUMAN 261 500 DBREF 2YJD C 0 12 PDB 2YJD 2YJD 0 12 DBREF 2YJD D 0 12 PDB 2YJD 2YJD 0 12 SEQRES 1 A 240 ASP ALA LEU SER PRO GLU GLN LEU VAL LEU THR LEU LEU SEQRES 2 A 240 GLU ALA GLU PRO PRO HIS VAL LEU ILE SER ARG PRO SER SEQRES 3 A 240 ALA PRO PHE THR GLU ALA SER MET MET MET SER LEU THR SEQRES 4 A 240 LYS LEU ALA ASP LYS GLU LEU VAL HIS MET ILE SER TRP SEQRES 5 A 240 ALA LYS LYS ILE PRO GLY PHE VAL GLU LEU SER LEU PHE SEQRES 6 A 240 ASP GLN VAL ARG LEU LEU GLU SER CYS TRP MET GLU VAL SEQRES 7 A 240 LEU MET MET GLY LEU MET TRP ARG SER ILE ASP HIS PRO SEQRES 8 A 240 GLY LYS LEU ILE PHE ALA PRO ASP LEU VAL LEU ASP ARG SEQRES 9 A 240 ASP GLU GLY LYS CYS VAL GLU GLY ILE LEU GLU ILE PHE SEQRES 10 A 240 ASP MET LEU LEU ALA THR THR SER ARG PHE ARG GLU LEU SEQRES 11 A 240 LYS LEU GLN HIS LYS GLU TYR LEU CYS VAL LYS ALA MET SEQRES 12 A 240 ILE LEU LEU ASN SER SER MET TYR PRO LEU VAL THR ALA SEQRES 13 A 240 THR GLN ASP ALA ASP SER SER ARG LYS LEU ALA HIS LEU SEQRES 14 A 240 LEU ASN ALA VAL THR ASP ALA LEU VAL TRP VAL ILE ALA SEQRES 15 A 240 LYS SER GLY ILE SER SER GLN GLN GLN SER MET ARG LEU SEQRES 16 A 240 ALA ASN LEU LEU MET LEU LEU SER HIS VAL ARG HIS ALA SEQRES 17 A 240 SER ASN LYS GLY MET GLU HIS LEU LEU ASN MET LYS CYS SEQRES 18 A 240 LYS ASN VAL VAL PRO VAL TYR ASP LEU LEU LEU GLU MET SEQRES 19 A 240 LEU ASN ALA HIS VAL LEU SEQRES 1 B 240 ASP ALA LEU SER PRO GLU GLN LEU VAL LEU THR LEU LEU SEQRES 2 B 240 GLU ALA GLU PRO PRO HIS VAL LEU ILE SER ARG PRO SER SEQRES 3 B 240 ALA PRO PHE THR GLU ALA SER MET MET MET SER LEU THR SEQRES 4 B 240 LYS LEU ALA ASP LYS GLU LEU VAL HIS MET ILE SER TRP SEQRES 5 B 240 ALA LYS LYS ILE PRO GLY PHE VAL GLU LEU SER LEU PHE SEQRES 6 B 240 ASP GLN VAL ARG LEU LEU GLU SER CYS TRP MET GLU VAL SEQRES 7 B 240 LEU MET MET GLY LEU MET TRP ARG SER ILE ASP HIS PRO SEQRES 8 B 240 GLY LYS LEU ILE PHE ALA PRO ASP LEU VAL LEU ASP ARG SEQRES 9 B 240 ASP GLU GLY LYS CYS VAL GLU GLY ILE LEU GLU ILE PHE SEQRES 10 B 240 ASP MET LEU LEU ALA THR THR SER ARG PHE ARG GLU LEU SEQRES 11 B 240 LYS LEU GLN HIS LYS GLU TYR LEU CYS VAL LYS ALA MET SEQRES 12 B 240 ILE LEU LEU ASN SER SER MET TYR PRO LEU VAL THR ALA SEQRES 13 B 240 THR GLN ASP ALA ASP SER SER ARG LYS LEU ALA HIS LEU SEQRES 14 B 240 LEU ASN ALA VAL THR ASP ALA LEU VAL TRP VAL ILE ALA SEQRES 15 B 240 LYS SER GLY ILE SER SER GLN GLN GLN SER MET ARG LEU SEQRES 16 B 240 ALA ASN LEU LEU MET LEU LEU SER HIS VAL ARG HIS ALA SEQRES 17 B 240 SER ASN LYS GLY MET GLU HIS LEU LEU ASN MET LYS CYS SEQRES 18 B 240 LYS ASN VAL VAL PRO VAL TYR ASP LEU LEU LEU GLU MET SEQRES 19 B 240 LEU ASN ALA HIS VAL LEU SEQRES 1 C 13 ACE HIS MK8 ILE LEU HIS MK8 LEU LEU GLN ASP SER NH2 SEQRES 1 D 13 ACE HIS MK8 ILE LEU HIS MK8 LEU LEU GLN ASP SER NH2 MODRES 2YJD MK8 C 2 LEU 2-METHYL-L-NORLEUCINE MODRES 2YJD MK8 C 6 LEU 2-METHYL-L-NORLEUCINE MODRES 2YJD MK8 D 2 LEU 2-METHYL-L-NORLEUCINE MODRES 2YJD MK8 D 6 LEU 2-METHYL-L-NORLEUCINE HET ACE C 0 3 HET MK8 C 2 9 HET MK8 C 6 9 HET NH2 C 12 1 HET ACE D 0 3 HET MK8 D 2 9 HET MK8 D 6 9 HET NH2 D 12 1 HET YJD A1498 20 HET YJD B1498 20 HETNAM ACE ACETYL GROUP HETNAM MK8 2-METHYL-L-NORLEUCINE HETNAM NH2 AMINO GROUP HETNAM YJD 4-(2-PROPAN-2-YLOXYBENZIMIDAZOL-1-YL)PHENOL FORMUL 5 ACE 2(C2 H4 O) FORMUL 6 MK8 4(C7 H15 N O2) FORMUL 7 NH2 2(H2 N) FORMUL 8 YJD 2(C16 H16 N2 O2) FORMUL 9 HOH *206(H2 O) HELIX 1 1 SER A 264 ALA A 275 1 12 HELIX 2 2 THR A 290 LYS A 315 1 26 HELIX 3 3 GLY A 318 LEU A 322 5 5 HELIX 4 4 SER A 323 ILE A 348 1 26 HELIX 5 5 ASP A 365 VAL A 370 5 6 HELIX 6 6 ILE A 373 LEU A 390 1 18 HELIX 7 7 GLN A 393 ASN A 407 1 15 HELIX 8 8 SER A 422 LYS A 443 1 22 HELIX 9 9 SER A 447 LYS A 482 1 36 HELIX 10 10 TYR A 488 ALA A 497 1 10 HELIX 11 11 SER B 264 GLU B 276 1 13 HELIX 12 12 THR B 290 LYS B 315 1 26 HELIX 13 13 SER B 323 ILE B 348 1 26 HELIX 14 14 ASP B 365 CYS B 369 5 5 HELIX 15 15 GLY B 372 LYS B 391 1 20 HELIX 16 16 GLN B 393 SER B 408 1 16 HELIX 17 17 SER B 422 LYS B 443 1 22 HELIX 18 18 SER B 447 LEU B 461 1 15 HELIX 19 19 LEU B 461 LYS B 482 1 22 HELIX 20 20 ASP B 489 ALA B 497 1 9 HELIX 21 21 HIS C 1 LEU C 8 1 8 HELIX 22 22 HIS D 1 LEU D 8 1 8 SHEET 1 AA 2 LYS A 353 ALA A 357 0 SHEET 2 AA 2 LEU A 360 ASP A 363 -1 O LEU A 360 N PHE A 356 SHEET 1 BA 2 LYS B 353 ALA B 357 0 SHEET 2 BA 2 LEU B 360 ASP B 363 -1 O LEU B 360 N PHE B 356 LINK C HIS C 1 N MK8 C 2 1555 1555 1.39 LINK CE MK8 C 2 CE MK8 C 6 1555 1555 1.34 LINK C MK8 C 2 N ILE C 3 1555 1555 1.36 LINK C HIS C 5 N MK8 C 6 1555 1555 1.39 LINK C MK8 C 6 N LEU C 7 1555 1555 1.38 LINK C HIS D 1 N MK8 D 2 1555 1555 1.38 LINK CE MK8 D 2 CE MK8 D 6 1555 1555 1.33 LINK C MK8 D 2 N ILE D 3 1555 1555 1.37 LINK C HIS D 5 N MK8 D 6 1555 1555 1.37 LINK C MK8 D 6 N LEU D 7 1555 1555 1.37 SITE 1 AC1 14 THR A 299 ALA A 302 GLU A 305 LEU A 339 SITE 2 AC1 14 ARG A 346 PHE A 356 ILE A 373 ILE A 376 SITE 3 AC1 14 PHE A 377 LEU A 380 LEU A 476 LEU A 491 SITE 4 AC1 14 HOH A2014 HOH A2099 SITE 1 AC2 15 MET B 295 ALA B 302 GLU B 305 MET B 336 SITE 2 AC2 15 LEU B 339 ARG B 346 PHE B 356 ILE B 373 SITE 3 AC2 15 ILE B 376 PHE B 377 LEU B 380 LEU B 476 SITE 4 AC2 15 LEU B 491 HOH B2019 HOH B2094 CRYST1 102.620 102.620 102.620 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009745 0.00000 MTRIX1 1 0.056780 0.998300 -0.009640 -0.58420 1 MTRIX2 1 0.998400 -0.056720 0.005810 0.41460 1 MTRIX3 1 0.005252 -0.009950 -0.999900 -22.29000 1