PDB Short entry for 2YPB HEADER IMMUNE SYSTEM 30-OCT-12 2YPB TITLE STRUCTURE OF THE SCL:E47 COMPLEX BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BHLH, RESIDUES 5-78; COMPND 5 SYNONYM: TAL-1, CLASS A BASIC HELIX-LOOP-HELIX PROTEIN 17, BHLHA17, COMPND 6 STEM CELL PROTEIN, T-CELL LEUKEMIA/LYMPHOMA PROTEIN 5, SCL; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRANSCRIPTION FACTOR E2-ALPHA; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 535-613; COMPND 12 SYNONYM: CLASS B BASIC HELIX-LOOP-HELIX PROTEIN 21, BHLHB21, COMPND 13 IMMUNOGLOBULIN ENHANCER-BINDING FACTOR E12/E47, IMMUNOGLOBULIN COMPND 14 TRANSCRIPTION FACTOR 1, KAPPA-E2-BINDING FACTOR, TRANSCRIPTION FACTOR COMPND 15 3, TCF -3, TRANSCRIPTION FACTOR ITF-1, E47; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: EBOX FORWARD; COMPND 19 CHAIN: E; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: EBOX REVERSE; COMPND 23 CHAIN: F; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_TAXID: 9606 KEYWDS IMMUNE SYSTEM, HEMATOPOIESIS, LEUKEMIA EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,S.J.HOOSDALLY,K.TULADHAR,D.KARIA,E.PONSELE,O.PLATONOVA, AUTHOR 2 P.VYAS,R.PATIENT,C.PORCHER,E.J.MANCINI REVDAT 2 20-DEC-23 2YPB 1 REMARK REVDAT 1 31-JUL-13 2YPB 0 JRNL AUTH K.EL OMARI,S.J.HOOSDALLY,K.TULADHAR,D.KARIA,E.HALL-PONSELE, JRNL AUTH 2 O.PLATONOVA,P.VYAS,R.PATIENT,C.PORCHER,E.J.MANCINI JRNL TITL STRUCTURAL BASIS FOR LMO2-DRIVEN RECRUITMENT OF THE JRNL TITL 2 SCL:E47BHLH HETERODIMER TO HEMATOPOIETIC-SPECIFIC JRNL TITL 3 TRANSCRIPTIONAL TARGETS. JRNL REF CELL REP. V. 4 135 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 23831025 JRNL DOI 10.1016/J.CELREP.2013.06.008 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 6860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 331 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 452 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.4000 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1174 REMARK 3 NUCLEIC ACID ATOMS : 448 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 117.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.14000 REMARK 3 B22 (A**2) : -3.96000 REMARK 3 B33 (A**2) : -4.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.563 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.413 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.421 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 51.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1687 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2353 ; 0.804 ; 2.306 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 139 ; 4.145 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;29.275 ;22.879 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 249 ;14.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;12.082 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 261 ; 0.042 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1114 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 703 ; 3.057 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1131 ; 5.215 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 984 ; 5.226 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1222 ; 7.857 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0130 -46.2700 -3.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.8610 T22: 0.5300 REMARK 3 T33: 0.6681 T12: 0.1199 REMARK 3 T13: 0.4390 T23: -0.1208 REMARK 3 L TENSOR REMARK 3 L11: 13.2925 L22: 18.3260 REMARK 3 L33: 16.7706 L12: -7.5370 REMARK 3 L13: 13.7342 L23: -2.0106 REMARK 3 S TENSOR REMARK 3 S11: 0.5578 S12: 0.3382 S13: -1.1086 REMARK 3 S21: -0.0052 S22: 0.6270 S23: -0.0120 REMARK 3 S31: 1.1125 S32: 0.6932 S33: -1.1848 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9770 -32.8450 -4.3050 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.6935 REMARK 3 T33: 0.8415 T12: -0.1924 REMARK 3 T13: -0.1142 T23: 0.5951 REMARK 3 L TENSOR REMARK 3 L11: 12.7289 L22: 38.0984 REMARK 3 L33: 29.7179 L12: -21.4116 REMARK 3 L13: 6.2059 L23: -3.7962 REMARK 3 S TENSOR REMARK 3 S11: 0.7419 S12: -0.3602 S13: 0.7458 REMARK 3 S21: -1.3750 S22: 0.1718 S23: -2.0729 REMARK 3 S31: -0.9591 S32: -0.4081 S33: -0.9137 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8370 -20.4810 -5.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.5512 REMARK 3 T33: 0.3710 T12: 0.1320 REMARK 3 T13: 0.0634 T23: -0.1493 REMARK 3 L TENSOR REMARK 3 L11: 17.9451 L22: 35.3410 REMARK 3 L33: 15.8600 L12: -24.0896 REMARK 3 L13: -1.1083 L23: -5.2105 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.5787 S13: 0.2992 REMARK 3 S21: -0.1560 S22: 0.5338 S23: -0.1377 REMARK 3 S31: 0.0901 S32: -0.0115 S33: -0.5304 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2820 -7.0440 -11.8630 REMARK 3 T TENSOR REMARK 3 T11: 0.3656 T22: 0.3993 REMARK 3 T33: 0.4545 T12: 0.2536 REMARK 3 T13: -0.0208 T23: -0.1390 REMARK 3 L TENSOR REMARK 3 L11: 9.8831 L22: 14.1802 REMARK 3 L33: 5.3906 L12: 2.6408 REMARK 3 L13: 0.5399 L23: 0.5582 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: 0.1488 S13: 0.8621 REMARK 3 S21: -0.3781 S22: 0.1815 S23: 0.8544 REMARK 3 S31: -0.6198 S32: -0.0152 S33: -0.1194 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 539 B 548 REMARK 3 ORIGIN FOR THE GROUP (A): -34.1650 -46.6180 -23.5010 REMARK 3 T TENSOR REMARK 3 T11: 1.8356 T22: 1.0065 REMARK 3 T33: 0.7633 T12: -0.3891 REMARK 3 T13: -0.1288 T23: -0.1284 REMARK 3 L TENSOR REMARK 3 L11: 40.6780 L22: 49.2991 REMARK 3 L33: 3.5091 L12: 26.7180 REMARK 3 L13: 8.4625 L23: 11.7436 REMARK 3 S TENSOR REMARK 3 S11: 0.2186 S12: 0.7630 S13: -3.0357 REMARK 3 S21: 0.1515 S22: 0.2889 S23: -0.2609 REMARK 3 S31: 0.9838 S32: -0.1556 S33: -0.5075 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 549 B 562 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1050 -30.3160 -21.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.3434 T22: 0.3942 REMARK 3 T33: 0.3121 T12: 0.1835 REMARK 3 T13: 0.0016 T23: -0.0761 REMARK 3 L TENSOR REMARK 3 L11: 12.6619 L22: 49.1202 REMARK 3 L33: 2.6794 L12: 20.5446 REMARK 3 L13: 2.5068 L23: 9.9253 REMARK 3 S TENSOR REMARK 3 S11: -0.1850 S12: 0.6043 S13: 0.7326 REMARK 3 S21: 0.4766 S22: 0.4146 S23: 0.2900 REMARK 3 S31: 0.2614 S32: -0.0472 S33: -0.2297 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 563 B 586 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0610 -13.7130 -16.9980 REMARK 3 T TENSOR REMARK 3 T11: 0.7539 T22: 0.6625 REMARK 3 T33: 0.5072 T12: -0.2294 REMARK 3 T13: 0.1497 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 7.8845 L22: 12.4013 REMARK 3 L33: 0.7150 L12: 4.1286 REMARK 3 L13: -1.3325 L23: -2.3833 REMARK 3 S TENSOR REMARK 3 S11: -0.1175 S12: 1.0337 S13: 0.5539 REMARK 3 S21: -0.9321 S22: 0.0730 S23: -0.7363 REMARK 3 S31: -0.1563 S32: 0.1716 S33: 0.0446 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 587 B 609 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6900 -2.3500 -6.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.6430 T22: 0.4813 REMARK 3 T33: 0.9281 T12: -0.0140 REMARK 3 T13: -0.0801 T23: -0.1292 REMARK 3 L TENSOR REMARK 3 L11: 0.7546 L22: 33.6952 REMARK 3 L33: 7.2252 L12: -4.3699 REMARK 3 L13: -2.0215 L23: 12.3238 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: -0.0224 S13: 0.3722 REMARK 3 S21: 1.5345 S22: -0.0919 S23: -0.9004 REMARK 3 S31: -0.5930 S32: -0.1447 S33: 0.0723 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 4 E 10 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9970 -32.8520 -11.0250 REMARK 3 T TENSOR REMARK 3 T11: 0.5169 T22: 0.3646 REMARK 3 T33: 0.2139 T12: 0.0903 REMARK 3 T13: 0.1829 T23: -0.0777 REMARK 3 L TENSOR REMARK 3 L11: 17.1760 L22: 15.3942 REMARK 3 L33: 0.1739 L12: -8.8029 REMARK 3 L13: -1.5754 L23: 1.2542 REMARK 3 S TENSOR REMARK 3 S11: 0.6500 S12: 0.5916 S13: 0.0361 REMARK 3 S21: -1.0431 S22: -0.6489 S23: 0.7929 REMARK 3 S31: -0.1203 S32: -0.0634 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 11 E 14 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8240 -36.2940 -18.3000 REMARK 3 T TENSOR REMARK 3 T11: 0.3572 T22: 0.6092 REMARK 3 T33: 0.2278 T12: 0.2134 REMARK 3 T13: 0.2512 T23: 0.1147 REMARK 3 L TENSOR REMARK 3 L11: 16.4274 L22: 18.8246 REMARK 3 L33: 0.8074 L12: 10.3768 REMARK 3 L13: -0.1616 L23: 2.9549 REMARK 3 S TENSOR REMARK 3 S11: -0.5924 S12: 0.3201 S13: -0.0722 REMARK 3 S21: 0.4234 S22: 0.3782 S23: 0.5694 REMARK 3 S31: 0.2885 S32: 0.1916 S33: 0.2142 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 22 F 26 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1230 -30.5920 -12.9730 REMARK 3 T TENSOR REMARK 3 T11: 0.2484 T22: 0.2772 REMARK 3 T33: 0.1412 T12: -0.0188 REMARK 3 T13: 0.1167 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 13.5870 L22: 11.2194 REMARK 3 L33: 10.1603 L12: -2.0712 REMARK 3 L13: 7.6965 L23: -3.0881 REMARK 3 S TENSOR REMARK 3 S11: 0.4433 S12: -0.3264 S13: 0.3157 REMARK 3 S21: 0.3092 S22: -0.3342 S23: -0.1096 REMARK 3 S31: 0.7237 S32: 0.3275 S33: -0.1092 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 27 F 32 REMARK 3 ORIGIN FOR THE GROUP (A): -26.3250 -37.2580 -13.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.3867 T22: 0.3522 REMARK 3 T33: 0.3195 T12: 0.0148 REMARK 3 T13: 0.0775 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 4.8538 L22: 10.6468 REMARK 3 L33: 11.6340 L12: 3.6689 REMARK 3 L13: 3.8142 L23: -0.7463 REMARK 3 S TENSOR REMARK 3 S11: 0.4314 S12: -0.5381 S13: -0.4168 REMARK 3 S21: 0.7409 S22: -0.1390 S23: 0.7808 REMARK 3 S31: -0.6675 S32: -0.6092 S33: -0.2925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.U VALUES WITH TLS ADDED REMARK 4 REMARK 4 2YPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7203 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 3.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YPA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 % (V/V) 2-METHYL-2, 4-PENTANEDIOL REMARK 280 (MPD), 40 MM MAGNESIUM CHLORIDE, 50 MM SODIUM CACODYLATE PH 6.0 REMARK 280 AND 2MM GLUTATHIONE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.70600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.70600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.59650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.44100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.59650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.44100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.70600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.59650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.44100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.70600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.59650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.44100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 163 REMARK 465 GLY A 164 REMARK 465 SER A 165 REMARK 465 SER A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 SER A 173 REMARK 465 GLN A 174 REMARK 465 ASP A 175 REMARK 465 PRO A 176 REMARK 465 GLU A 177 REMARK 465 ILE A 178 REMARK 465 SER A 179 REMARK 465 ASP A 180 REMARK 465 GLU A 248 REMARK 465 GLU A 249 REMARK 465 GLY A 250 REMARK 465 THR A 251 REMARK 465 GLN A 252 REMARK 465 ARG A 253 REMARK 465 MET B 532 REMARK 465 ALA B 533 REMARK 465 ASP B 534 REMARK 465 LEU B 535 REMARK 465 PRO B 610 REMARK 465 LYS B 611 REMARK 465 ALA B 612 REMARK 465 ALA B 613 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 609 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 8 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT E 12 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG F 31 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HLH RELATED DB: PDB REMARK 900 RELATED ID: 2YPA RELATED DB: PDB REMARK 900 STRUCTURE OF THE SCL:E47:LMO2:LDB1 COMPLEX BOUND TO DNA DBREF 2YPB A 180 253 UNP P17542 TAL1_HUMAN 180 253 DBREF 2YPB B 535 613 UNP P15923 TFE2_HUMAN 535 613 DBREF 2YPB E 4 14 PDB 2YPB 2YPB 4 14 DBREF 2YPB F 22 32 PDB 2YPB 2YPB 22 32 SEQADV 2YPB MET A 163 UNP P17542 EXPRESSION TAG SEQADV 2YPB GLY A 164 UNP P17542 EXPRESSION TAG SEQADV 2YPB SER A 165 UNP P17542 EXPRESSION TAG SEQADV 2YPB SER A 166 UNP P17542 EXPRESSION TAG SEQADV 2YPB HIS A 167 UNP P17542 EXPRESSION TAG SEQADV 2YPB HIS A 168 UNP P17542 EXPRESSION TAG SEQADV 2YPB HIS A 169 UNP P17542 EXPRESSION TAG SEQADV 2YPB HIS A 170 UNP P17542 EXPRESSION TAG SEQADV 2YPB HIS A 171 UNP P17542 EXPRESSION TAG SEQADV 2YPB HIS A 172 UNP P17542 EXPRESSION TAG SEQADV 2YPB SER A 173 UNP P17542 EXPRESSION TAG SEQADV 2YPB GLN A 174 UNP P17542 EXPRESSION TAG SEQADV 2YPB ASP A 175 UNP P17542 EXPRESSION TAG SEQADV 2YPB PRO A 176 UNP P17542 EXPRESSION TAG SEQADV 2YPB GLU A 177 UNP P17542 EXPRESSION TAG SEQADV 2YPB ILE A 178 UNP P17542 EXPRESSION TAG SEQADV 2YPB SER A 179 UNP P17542 EXPRESSION TAG SEQADV 2YPB MET B 532 UNP P15923 EXPRESSION TAG SEQADV 2YPB ALA B 533 UNP P15923 EXPRESSION TAG SEQADV 2YPB ASP B 534 UNP P15923 EXPRESSION TAG SEQRES 1 A 91 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 91 PRO GLU ILE SER ASP GLY PRO HIS THR LYS VAL VAL ARG SEQRES 3 A 91 ARG ILE PHE THR ASN SER ARG GLU ARG TRP ARG GLN GLN SEQRES 4 A 91 ASN VAL ASN GLY ALA PHE ALA GLU LEU ARG LYS LEU ILE SEQRES 5 A 91 PRO THR HIS PRO PRO ASP LYS LYS LEU SER LYS ASN GLU SEQRES 6 A 91 ILE LEU ARG LEU ALA MET LYS TYR ILE ASN PHE LEU ALA SEQRES 7 A 91 LYS LEU LEU ASN ASP GLN GLU GLU GLU GLY THR GLN ARG SEQRES 1 B 82 MET ALA ASP LEU SER LEU GLU GLU LYS ASP LEU ARG ASP SEQRES 2 B 82 ARG GLU ARG ARG MET ALA ASN ASN ALA ARG GLU ARG VAL SEQRES 3 B 82 ARG VAL ARG ASP ILE ASN GLU ALA PHE ARG GLU LEU GLY SEQRES 4 B 82 ARG MET CYS GLN MET HIS LEU LYS SER ASP LYS ALA GLN SEQRES 5 B 82 THR LYS LEU LEU ILE LEU GLN GLN ALA VAL GLN VAL ILE SEQRES 6 B 82 LEU GLY LEU GLU GLN GLN VAL ARG GLU ARG ASN LEU ASN SEQRES 7 B 82 PRO LYS ALA ALA SEQRES 1 E 11 DA DC DC DA DT DC DT DG DT DT DC SEQRES 1 F 11 DG DA DA DC DA DG DA DT DG DG DT HELIX 1 1 GLY A 181 HIS A 183 5 3 HELIX 2 2 THR A 184 ILE A 214 1 31 HELIX 3 3 SER A 224 GLU A 247 1 24 HELIX 4 4 GLU B 538 LYS B 578 1 41 HELIX 5 5 THR B 584 ARG B 604 1 21 CISPEP 1 HIS A 217 PRO A 218 0 -1.12 CISPEP 2 LEU B 608 ASN B 609 0 -0.20 CRYST1 73.193 152.882 55.412 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013663 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018047 0.00000