PDB Short entry for 2YQ6 HEADER APOPTOSIS 06-NOV-12 2YQ6 TITLE STRUCTURE OF BCL-XL BOUND TO BIMSAHB COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-26,83-209; COMPND 5 SYNONYM: BCL-XL, BCL2-L-1, APOPTOSIS REGULATOR BCL-X; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BIM BETA 5; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: BH3 DOMAIN, RESIDUES 14-31; COMPND 11 SYNONYM: BIM; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 OTHER_DETAILS: COVALENT LINKAGE BETWEEN SIDE CHAINS OF NON-NATURAL COMPND 15 AMINO ACIDS AT POSITIONS 154 AND 158, JOINED THROUGH A METATHESIS COMPND 16 REACTION. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS CONSTRAINED PEPTIDE, APOPTOSIS, BCL-2 FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR B.J.SMITH,P.E.CZABOTAR REVDAT 3 20-DEC-23 2YQ6 1 REMARK LINK REVDAT 2 27-FEB-13 2YQ6 1 JRNL REVDAT 1 28-NOV-12 2YQ6 0 JRNL AUTH T.OKAMOTO,K.ZOBEL,A.FEDOROVA,C.QUAN,H.YANG,W.J.FAIRBROTHER, JRNL AUTH 2 D.C.S.HUANG,B.J.SMITH,K.DESHAYES,P.E.CZABOTAR JRNL TITL STABILIZING THE PRO-APOPTOTIC BIMBH3 HELIX (BIMSAHB) DOES JRNL TITL 2 NOT NECESSARILY ENHANCE AFFINITY OR BIOLOGICAL ACTIVITY. JRNL REF ACS CHEM.BIOL. V. 8 297 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23151250 JRNL DOI 10.1021/CB3005403 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 14368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2452 - 3.0763 1.00 2846 158 0.1681 0.2006 REMARK 3 2 3.0763 - 2.4419 1.00 2803 145 0.1659 0.1821 REMARK 3 3 2.4419 - 2.1333 1.00 2770 144 0.1495 0.1950 REMARK 3 4 2.1333 - 1.9383 1.00 2756 137 0.1667 0.2285 REMARK 3 5 1.9383 - 1.7993 0.90 2474 135 0.1992 0.2341 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1378 REMARK 3 ANGLE : 0.948 1857 REMARK 3 CHIRALITY : 0.066 188 REMARK 3 PLANARITY : 0.004 235 REMARK 3 DIHEDRAL : 13.838 488 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID -4 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2964 -6.1875 -37.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.1729 REMARK 3 T33: 0.1244 T12: -0.0634 REMARK 3 T13: -0.0052 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 6.0982 L22: 6.4386 REMARK 3 L33: 1.5004 L12: -4.5656 REMARK 3 L13: -1.8063 L23: 2.6026 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: -0.2722 S13: -0.3614 REMARK 3 S21: -0.0924 S22: 0.0417 S23: 0.2182 REMARK 3 S31: -0.0269 S32: 0.0639 S33: -0.0798 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 26 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2919 3.7032 -21.2718 REMARK 3 T TENSOR REMARK 3 T11: 0.2430 T22: 0.1535 REMARK 3 T33: 0.1627 T12: 0.0611 REMARK 3 T13: 0.0351 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 4.6368 L22: 3.8361 REMARK 3 L33: 7.0642 L12: 3.4587 REMARK 3 L13: 3.5775 L23: 4.9641 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: 0.1160 S13: 0.4557 REMARK 3 S21: -0.3393 S22: -0.1477 S23: 0.2607 REMARK 3 S31: -0.4873 S32: -0.1996 S33: 0.0377 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 101 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6121 7.2450 -11.1517 REMARK 3 T TENSOR REMARK 3 T11: 0.3859 T22: 0.4743 REMARK 3 T33: 0.5340 T12: -0.0418 REMARK 3 T13: 0.0008 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.6839 L22: 2.9251 REMARK 3 L33: 1.5496 L12: 0.7652 REMARK 3 L13: -1.1473 L23: 0.9029 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.1916 S13: 1.8267 REMARK 3 S21: 0.4399 S22: 0.0039 S23: -1.4491 REMARK 3 S31: -0.4107 S32: 0.5388 S33: -0.0130 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 119 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9503 -4.0012 -11.9594 REMARK 3 T TENSOR REMARK 3 T11: 0.1281 T22: 0.0991 REMARK 3 T33: 0.1024 T12: 0.0244 REMARK 3 T13: -0.0159 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.1621 L22: 2.0830 REMARK 3 L33: 3.5669 L12: -0.1019 REMARK 3 L13: -1.5512 L23: 0.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: -0.0834 S13: -0.0901 REMARK 3 S21: 0.0069 S22: -0.0224 S23: -0.1519 REMARK 3 S31: 0.2229 S32: 0.2210 S33: 0.0431 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 147 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2752 8.0206 -6.9213 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.1742 REMARK 3 T33: 0.1853 T12: 0.0208 REMARK 3 T13: 0.0031 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.7929 L22: 7.9576 REMARK 3 L33: 8.6840 L12: -3.3475 REMARK 3 L13: 3.8910 L23: -1.2379 REMARK 3 S TENSOR REMARK 3 S11: -0.1367 S12: -0.1824 S13: 0.1935 REMARK 3 S21: 0.4652 S22: 0.1018 S23: -0.4853 REMARK 3 S31: 0.0466 S32: 0.3513 S33: -0.0069 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979867 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14372 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FDL CHAIN A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % (W/V) PEG 400, 5 % PEG 3000, 10 % REMARK 280 GLYCEROL AND 0.1 M MES PH 6.5. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.86800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.66800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.86800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.66800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 11.30736 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -60.36205 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 197 REMARK 465 ASN A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 ARG A 204 REMARK 465 LYS A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP B 147 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 147 CZ3 CH2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YQ7 RELATED DB: PDB REMARK 900 STRUCTURE OF BCL-XL BOUND TO BIMLOCK DBREF 2YQ6 A 1 26 UNP Q07817 B2CL1_HUMAN 1 26 DBREF 2YQ6 A 83 209 UNP Q07817 B2CL1_HUMAN 83 209 DBREF 2YQ6 B 147 164 UNP O43521 Q6JTU4_HUMAN 147 164 SEQADV 2YQ6 GLY A -4 UNP Q07817 EXPRESSION TAG SEQADV 2YQ6 PRO A -3 UNP Q07817 EXPRESSION TAG SEQADV 2YQ6 LEU A -2 UNP Q07817 EXPRESSION TAG SEQADV 2YQ6 GLY A -1 UNP Q07817 EXPRESSION TAG SEQADV 2YQ6 SER A 0 UNP Q07817 EXPRESSION TAG SEQADV 2YQ6 MK8 B 154 UNP Q6JTU4 ARG 21 ENGINEERED MUTATION SEQADV 2YQ6 MK8 B 158 UNP Q6JTU4 GLU 25 ENGINEERED MUTATION SEQADV 2YQ6 NH2 B 165 UNP Q6JTU4 AMIDATION SEQRES 1 A 158 GLY PRO LEU GLY SER MET SER GLN SER ASN ARG GLU LEU SEQRES 2 A 158 VAL VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY SEQRES 3 A 158 TYR SER TRP SER GLN MET ALA ALA VAL LYS GLN ALA LEU SEQRES 4 A 158 ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG ARG SEQRES 5 A 158 ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR PRO SEQRES 6 A 158 GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN GLU SEQRES 7 A 158 LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL ALA SEQRES 8 A 158 PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER VAL SEQRES 9 A 158 ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA ALA SEQRES 10 A 158 TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO TRP SEQRES 11 A 158 ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU LEU SEQRES 12 A 158 TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY GLN SEQRES 13 A 158 GLU ARG SEQRES 1 B 19 TRP ILE ALA GLN GLU LEU ARG MK8 ILE GLY ASP MK8 PHE SEQRES 2 B 19 ASN ALA TYR TYR ALA NH2 MODRES 2YQ6 MK8 B 154 LEU 2-METHYL-L-NORLEUCINE MODRES 2YQ6 MK8 B 158 LEU 2-METHYL-L-NORLEUCINE HET MK8 B 154 9 HET MK8 B 158 9 HET NH2 B 165 1 HET GOL A1197 6 HET GOL A1198 6 HET GOL A1199 6 HET GOL A1200 6 HET GOL A1201 6 HET GOL A1202 6 HET GOL B1000 6 HETNAM MK8 2-METHYL-L-NORLEUCINE HETNAM NH2 AMINO GROUP HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MK8 2(C7 H15 N O2) FORMUL 2 NH2 H2 N FORMUL 3 GOL 7(C3 H8 O3) FORMUL 10 HOH *74(H2 O) HELIX 1 1 GLY A -4 GLN A 19 1 24 HELIX 2 2 SER A 25 TYR A 101 1 21 HELIX 3 3 TYR A 101 GLN A 111 1 11 HELIX 4 4 THR A 118 ARG A 132 1 15 HELIX 5 5 ASN A 136 LYS A 157 1 22 HELIX 6 6 VAL A 161 LEU A 178 1 18 HELIX 7 7 LEU A 178 ASN A 185 1 8 HELIX 8 8 GLY A 186 GLY A 196 1 11 HELIX 9 9 TRP B 147 ALA B 164 1 18 LINK C ARG B 153 N MK8 B 154 1555 1555 1.33 LINK C MK8 B 154 N ILE B 155 1555 1555 1.33 LINK CE MK8 B 154 CE MK8 B 158 1555 1555 1.34 LINK C ASP B 157 N MK8 B 158 1555 1555 1.34 LINK C MK8 B 158 N PHE B 159 1555 1555 1.33 LINK C ALA B 164 N NH2 B 165 1555 1555 1.33 SITE 1 AC1 6 ASP A 133 ASN A 136 ARG A 139 HOH A2068 SITE 2 AC1 6 ASP B 157 HOH B2004 SITE 1 AC2 5 ARG A 132 ASP A 133 ASN A 136 TRP A 137 SITE 2 AC2 5 ASN B 160 SITE 1 AC3 6 ASP A 11 TYR A 15 SER A 18 GLN A 88 SITE 2 AC3 6 ARG A 91 GOL A1200 SITE 1 AC4 6 VAL A 10 SER A 14 TRP A 24 SER A 25 SITE 2 AC4 6 LYS A 87 GOL A1199 SITE 1 AC5 4 ALA A 104 ASP A 176 GLU B 151 MK8 B 158 SITE 1 AC6 3 SER A 18 GLN A 88 GLU A 92 SITE 1 AC7 1 MK8 B 158 CRYST1 73.736 35.336 61.412 90.00 100.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013562 0.000000 0.002540 0.00000 SCALE2 0.000000 0.028300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016567 0.00000