PDB Short entry for 2YQF
HEADER    PROTEIN BINDING                         30-MAR-07   2YQF              
TITLE     SOLUTION STRUCTURE OF THE DEATH DOMAIN OF ANKYRIN-1                   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ANKYRIN-1;                                                 
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: DEATH DOMAIN, UNP RESIDUES 1394-1497;                      
COMPND   5 SYNONYM: ERYTHROCYTE ANKYRIN, ANKYRIN-R;                             
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: ANK1, ANK;                                                     
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P060123-20;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    DEATH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON        
KEYWDS   2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL         
KEYWDS   3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING                
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,        
AUTHOR   2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)    
REVDAT   3   16-MAR-22 2YQF    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2YQF    1       VERSN                                    
REVDAT   1   01-APR-08 2YQF    0                                                
JRNL        AUTH   W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,          
JRNL        AUTH 2 M.SHIROUZU,S.YOKOYAMA                                        
JRNL        TITL   SOLUTION STRUCTURE OF THE DEATH DOMAIN OF ANKYRIN-1          
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.5, CYANA 2.0.17                            
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUNTERT, P. (CYANA)                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2YQF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000027003.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 20MM D-TRIS-HCL(PH7.0); 100MM      
REMARK 210                                   NACL; 1MM D-DTT; 0.02% NAN3; 90%   
REMARK 210                                   H2O, 10% D2O                       
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20060702, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.9820, CYANA 2.0.17        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS, STRUCTURES   
REMARK 210                                   WITH THE LOWEST ENERGY, TARGET     
REMARK 210                                   FUNCTION                           
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A1417      -28.33    -37.55                                   
REMARK 500  1 ILE A1432      -72.41    -57.05                                   
REMARK 500  1 ARG A1491      157.05    -45.38                                   
REMARK 500  2 SER A1389       98.96    -64.98                                   
REMARK 500  2 PRO A1394     -171.95    -69.77                                   
REMARK 500  2 LYS A1406      -70.79    -53.39                                   
REMARK 500  2 ILE A1432      -72.03    -59.43                                   
REMARK 500  2 ALA A1462       95.55    -54.71                                   
REMARK 500  2 ARG A1488       90.54    -60.22                                   
REMARK 500  3 SER A1417      -27.68    -37.94                                   
REMARK 500  3 ILE A1432      -71.42    -61.61                                   
REMARK 500  3 ASN A1461      -36.54    -39.07                                   
REMARK 500  3 ALA A1462      126.33    -36.43                                   
REMARK 500  3 ARG A1488      109.03    -45.20                                   
REMARK 500  3 ARG A1491       45.05    -80.99                                   
REMARK 500  3 ASN A1492       49.59     35.16                                   
REMARK 500  3 PRO A1495       98.61    -69.81                                   
REMARK 500  4 SER A1389      125.14   -170.16                                   
REMARK 500  4 SER A1391       30.70     37.48                                   
REMARK 500  4 SER A1417      -29.81    -37.67                                   
REMARK 500  4 ILE A1432      -72.08    -58.32                                   
REMARK 500  4 ALA A1462      115.82    -35.13                                   
REMARK 500  4 MET A1464      -34.84    -34.62                                   
REMARK 500  4 ARG A1488      107.06    -50.28                                   
REMARK 500  4 ARG A1491      147.10   -173.55                                   
REMARK 500  5 SER A1389      102.48    -54.92                                   
REMARK 500  5 LEU A1397       97.60    -53.72                                   
REMARK 500  5 SER A1417      -25.89    -39.02                                   
REMARK 500  5 ILE A1432      -71.35    -57.05                                   
REMARK 500  5 ALA A1462      127.48    -38.87                                   
REMARK 500  5 GLU A1478      -36.09    -36.65                                   
REMARK 500  6 SER A1388       43.12    -90.46                                   
REMARK 500  6 SER A1417      -28.19    -38.55                                   
REMARK 500  6 TRP A1418      -38.93    -36.20                                   
REMARK 500  6 MET A1464      -37.04    -39.13                                   
REMARK 500  6 LEU A1493      144.16    -35.35                                   
REMARK 500  7 SER A1389      134.20    -37.58                                   
REMARK 500  7 GLU A1401      -34.40    -37.46                                   
REMARK 500  7 SER A1417      -27.77    -37.62                                   
REMARK 500  7 ILE A1432      -70.55    -57.18                                   
REMARK 500  7 ASN A1461      -35.59    -38.40                                   
REMARK 500  7 ASP A1496      160.55    -44.05                                   
REMARK 500  8 PRO A1394        0.49    -69.75                                   
REMARK 500  8 SER A1417      -27.06    -38.60                                   
REMARK 500  8 ILE A1432      -71.48    -56.16                                   
REMARK 500  8 ALA A1462      146.07    -38.57                                   
REMARK 500  8 ASP A1496      111.25   -174.74                                   
REMARK 500  9 SER A1398       44.92     35.52                                   
REMARK 500  9 SER A1417      -26.17    -38.82                                   
REMARK 500  9 GLU A1478      -34.35    -38.76                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     120 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSK003001404.1   RELATED DB: TARGETDB                    
DBREF  2YQF A 1394  1497  UNP    P16157   ANK1_HUMAN    1394   1497             
SEQADV 2YQF GLY A 1387  UNP  P16157              EXPRESSION TAG                 
SEQADV 2YQF SER A 1388  UNP  P16157              EXPRESSION TAG                 
SEQADV 2YQF SER A 1389  UNP  P16157              EXPRESSION TAG                 
SEQADV 2YQF GLY A 1390  UNP  P16157              EXPRESSION TAG                 
SEQADV 2YQF SER A 1391  UNP  P16157              EXPRESSION TAG                 
SEQADV 2YQF SER A 1392  UNP  P16157              EXPRESSION TAG                 
SEQADV 2YQF GLY A 1393  UNP  P16157              EXPRESSION TAG                 
SEQRES   1 A  111  GLY SER SER GLY SER SER GLY PRO GLY SER LEU SER GLY          
SEQRES   2 A  111  THR GLU GLN ALA GLU MET LYS MET ALA VAL ILE SER GLU          
SEQRES   3 A  111  HIS LEU GLY LEU SER TRP ALA GLU LEU ALA ARG GLU LEU          
SEQRES   4 A  111  GLN PHE SER VAL GLU ASP ILE ASN ARG ILE ARG VAL GLU          
SEQRES   5 A  111  ASN PRO ASN SER LEU LEU GLU GLN SER VAL ALA LEU LEU          
SEQRES   6 A  111  ASN LEU TRP VAL ILE ARG GLU GLY GLN ASN ALA ASN MET          
SEQRES   7 A  111  GLU ASN LEU TYR THR ALA LEU GLN SER ILE ASP ARG GLY          
SEQRES   8 A  111  GLU ILE VAL ASN MET LEU GLU GLY SER GLY ARG GLN SER          
SEQRES   9 A  111  ARG ASN LEU LYS PRO ASP ARG                                  
HELIX    1   1 THR A 1400  GLY A 1415  1                                  16    
HELIX    2   2 SER A 1417  LEU A 1425  1                                   9    
HELIX    3   3 SER A 1428  ASN A 1439  1                                  12    
HELIX    4   4 SER A 1442  GLY A 1459  1                                  18    
HELIX    5   5 ASN A 1463  ILE A 1474  1                                  12    
HELIX    6   6 GLY A 1477  GLU A 1484  1                                   8    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000