PDB Short entry for 2YRB HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-APR-07 2YRB TITLE SOLUTION STRUCTURE OF THE FIRST C2 DOMAIN FROM HUMAN KIAA1005 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FANTOM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2 DOMAIN; COMPND 5 SYNONYM: KIAA1005 PROTEIN, RPGR-INTERACTING PROTEIN 1-LIKE PROTEIN, COMPND 6 RPGRIP1-LIKE PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P050719-05; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA SANDWICH, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 2 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YRB 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YRB 1 VERSN REVDAT 1 02-OCT-07 2YRB 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST C2 DOMAIN FROM HUMAN JRNL TITL 2 KIAA1005 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YRB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027035. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.31MM UNIFORMLY 13C, 15N REMARK 210 -LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% NAN3, REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 598 -64.79 -93.28 REMARK 500 1 SER A 624 -71.41 -42.44 REMARK 500 1 GLU A 628 99.80 -37.93 REMARK 500 1 VAL A 665 136.42 -174.58 REMARK 500 1 ASN A 666 -68.76 -124.43 REMARK 500 1 GLN A 674 -62.80 -90.47 REMARK 500 1 THR A 688 -53.90 -131.59 REMARK 500 2 SER A 593 -62.19 -107.20 REMARK 500 2 HIS A 599 107.12 -46.70 REMARK 500 2 ASP A 626 41.55 -91.08 REMARK 500 2 TYR A 638 100.20 -34.40 REMARK 500 2 HIS A 652 64.97 -113.46 REMARK 500 2 ILE A 703 -19.09 -47.32 REMARK 500 2 ARG A 709 91.03 -55.88 REMARK 500 2 ASN A 725 38.29 -99.59 REMARK 500 3 SER A 618 -38.93 -38.15 REMARK 500 3 ASP A 626 44.72 -86.81 REMARK 500 3 TYR A 638 38.37 36.49 REMARK 500 3 HIS A 652 67.55 -110.15 REMARK 500 3 THR A 688 -74.23 -114.31 REMARK 500 3 ILE A 703 -18.92 -47.95 REMARK 500 3 ARG A 709 98.05 -63.74 REMARK 500 3 ASN A 725 43.11 -83.64 REMARK 500 3 PRO A 740 2.80 -69.78 REMARK 500 3 SER A 741 135.54 -33.96 REMARK 500 4 LEU A 600 129.21 -36.76 REMARK 500 4 GLU A 601 169.03 -46.12 REMARK 500 4 ASP A 626 44.97 -91.88 REMARK 500 4 TYR A 638 102.71 -30.76 REMARK 500 4 HIS A 652 57.29 -118.13 REMARK 500 4 THR A 688 -47.40 -132.00 REMARK 500 4 ILE A 693 -33.70 -133.77 REMARK 500 4 ARG A 709 84.62 -55.96 REMARK 500 4 ASP A 722 48.85 37.52 REMARK 500 4 ASN A 725 36.96 -91.72 REMARK 500 4 VAL A 737 133.47 -35.44 REMARK 500 4 SER A 742 94.69 -62.20 REMARK 500 5 ARG A 602 37.04 -88.27 REMARK 500 5 SER A 618 -26.89 -38.69 REMARK 500 5 ASP A 626 46.21 -92.36 REMARK 500 5 LEU A 642 154.32 -47.05 REMARK 500 5 HIS A 652 72.54 -108.30 REMARK 500 5 LEU A 668 -39.69 -33.94 REMARK 500 5 THR A 688 26.13 46.05 REMARK 500 5 THR A 692 135.74 -33.80 REMARK 500 5 SER A 707 105.03 -169.96 REMARK 500 5 PHE A 711 131.49 -37.24 REMARK 500 5 ASP A 722 41.80 34.39 REMARK 500 5 PRO A 740 2.91 -69.82 REMARK 500 6 THR A 597 119.70 -34.44 REMARK 500 REMARK 500 THIS ENTRY HAS 203 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100981.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS RESIDUE IS BAA76849 IN GENBANK. REMARK 999 SEE REF. 3 IN Q68CZ1 (FTM_HUMAN). DBREF 2YRB A 595 737 UNP Q68CZ1 FTM_HUMAN 595 737 SEQADV 2YRB GLY A 588 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB SER A 589 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB SER A 590 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB GLY A 591 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB SER A 592 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB SER A 593 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB GLY A 594 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB ASP A 595 UNP Q68CZ1 GLY 595 SEE REMARK 999 SEQADV 2YRB SER A 738 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB GLY A 739 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB PRO A 740 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB SER A 741 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB SER A 742 UNP Q68CZ1 EXPRESSION TAG SEQADV 2YRB GLY A 743 UNP Q68CZ1 EXPRESSION TAG SEQRES 1 A 156 GLY SER SER GLY SER SER GLY ASP GLU THR ILE HIS LEU SEQRES 2 A 156 GLU ARG GLY GLU ASN LEU PHE GLU ILE HIS ILE ASN LYS SEQRES 3 A 156 VAL THR PHE SER SER GLU VAL LEU GLN ALA SER GLY ASP SEQRES 4 A 156 LYS GLU PRO VAL THR PHE CYS THR TYR ALA PHE TYR ASP SEQRES 5 A 156 PHE GLU LEU GLN THR THR PRO VAL VAL ARG GLY LEU HIS SEQRES 6 A 156 PRO GLU TYR ASN PHE THR SER GLN TYR LEU VAL HIS VAL SEQRES 7 A 156 ASN ASP LEU PHE LEU GLN TYR ILE GLN LYS ASN THR ILE SEQRES 8 A 156 THR LEU GLU VAL HIS GLN ALA TYR SER THR GLU TYR GLU SEQRES 9 A 156 THR ILE ALA ALA CYS GLN LEU LYS PHE HIS GLU ILE LEU SEQRES 10 A 156 GLU LYS SER GLY ARG ILE PHE CYS THR ALA SER LEU ILE SEQRES 11 A 156 GLY THR LYS GLY ASP ILE PRO ASN PHE GLY THR VAL GLU SEQRES 12 A 156 TYR TRP PHE ARG LEU ARG VAL SER GLY PRO SER SER GLY HELIX 1 1 SER A 617 SER A 624 1 8 HELIX 2 2 ASN A 666 ASN A 676 1 11 HELIX 3 3 HIS A 701 LYS A 706 1 6 SHEET 1 A 4 PHE A 657 VAL A 663 0 SHEET 2 A 4 ASN A 605 VAL A 614 -1 N ILE A 609 O SER A 659 SHEET 3 A 4 GLY A 727 VAL A 737 -1 O GLU A 730 N LYS A 613 SHEET 4 A 4 ILE A 710 LEU A 716 -1 N ALA A 714 O VAL A 729 SHEET 1 B 3 GLN A 643 THR A 644 0 SHEET 2 B 3 VAL A 630 TYR A 635 -1 N TYR A 635 O GLN A 643 SHEET 3 B 3 VAL A 648 ARG A 649 -1 O VAL A 648 N THR A 631 SHEET 1 C 4 GLN A 643 THR A 644 0 SHEET 2 C 4 VAL A 630 TYR A 635 -1 N TYR A 635 O GLN A 643 SHEET 3 C 4 ILE A 678 ALA A 685 -1 O ALA A 685 N VAL A 630 SHEET 4 C 4 TYR A 690 LEU A 698 -1 O LEU A 698 N ILE A 678 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000