PDB Short entry for 2YRY
HEADER    SIGNALING PROTEIN                       03-APR-07   2YRY              
TITLE     SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN HOMOLOGY            
TITLE    2 DOMAIN-CONTAINING FAMILY A MEMBER 6 FROM HUMAN                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A             
COMPND   3 MEMBER 6;                                                            
COMPND   4 CHAIN: A;                                                            
COMPND   5 FRAGMENT: PH DOMAIN;                                                 
COMPND   6 SYNONYM: PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN 3,              
COMPND   7 PEPP-3;                                                              
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: PLEKHA6;                                                       
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P060515-01;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    PH DOMAIN, PEPP-3, STRUCTURAL GENOMICS, NPPSFA, NATIONAL              
KEYWDS   2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES,               
KEYWDS   3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI,               
KEYWDS   4 SIGNALING PROTEIN                                                    
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,                   
AUTHOR   2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE           
AUTHOR   3 (RSGI)                                                               
REVDAT   2   24-FEB-09 2YRY    1       VERSN                                    
REVDAT   1   09-OCT-07 2YRY    0                                                
JRNL        AUTH   H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,          
JRNL        AUTH 2 S.YOKOYAMA                                                   
JRNL        TITL   SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN            
JRNL        TITL 2 HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 6 FROM            
JRNL        TITL 3 HUMAN                                                        
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 2.0.17                                         
REMARK   3   AUTHORS     : GUNTERT, P.                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2YRY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-07.                  
REMARK 100 THE RCSB ID CODE IS RCSB027058.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 296                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.21MM PH DOMAIN U-15N,13C;        
REMARK 210                                   20MM D-TRIS-HCL; 100MM NACL;       
REMARK 210                                   1MM D-DTT; 0.02% NAN3; 90%         
REMARK 210                                   H2O, 10% D2O                       
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_NOESY, 3D_        
REMARK 210                                   15N-SEPARATED_NOESY                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR 3.5, NMRPIPE               
REMARK 210                                   20031121, NMRVIEW 5.0.4,           
REMARK 210                                   KUJIRA 0.9820, CYANA 2.0.17        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS,TARGET        
REMARK 210                                   FUNCTION                           
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LYS A   9      143.01   -173.92                                   
REMARK 500  1 ARG A  49       29.07     45.64                                   
REMARK 500  1 ALA A  74      138.55   -171.65                                   
REMARK 500  1 PRO A  78        0.28    -69.78                                   
REMARK 500  1 VAL A  95      -65.81   -100.34                                   
REMARK 500  1 ARG A  96     -178.42   -172.14                                   
REMARK 500  1 ARG A 120      144.45    -38.51                                   
REMARK 500  2 ARG A  49       25.57     46.07                                   
REMARK 500  2 GLU A  57       41.14    -83.37                                   
REMARK 500  2 PRO A  67       96.81    -69.77                                   
REMARK 500  2 VAL A  76     -176.68    -57.41                                   
REMARK 500  3 LYS A  37       97.78    -66.91                                   
REMARK 500  3 ARG A  49       29.14     46.83                                   
REMARK 500  3 VAL A  73      149.20    -36.56                                   
REMARK 500  3 ALA A  74      127.16   -175.02                                   
REMARK 500  3 PRO A  78        2.68    -69.71                                   
REMARK 500  3 ASN A  81       38.89    -86.26                                   
REMARK 500  3 ALA A  93       93.07    -33.40                                   
REMARK 500  3 VAL A  95      -75.14   -121.28                                   
REMARK 500  3 ARG A  96     -174.98   -171.83                                   
REMARK 500  3 ARG A 120      158.51    -39.17                                   
REMARK 500  4 HIS A  12      -56.79   -120.86                                   
REMARK 500  4 ALA A  32      -74.95    -70.41                                   
REMARK 500  4 LYS A  37       54.09     32.73                                   
REMARK 500  4 ARG A  49       27.96     45.70                                   
REMARK 500  4 VAL A  76      153.82    -46.54                                   
REMARK 500  4 PRO A  78        2.14    -69.79                                   
REMARK 500  4 VAL A  95      -70.30   -108.88                                   
REMARK 500  4 ARG A 120      129.42    -34.55                                   
REMARK 500  5 ARG A  10      146.02    -35.54                                   
REMARK 500  5 ASN A  19       41.16    -97.55                                   
REMARK 500  5 ALA A  74      130.68   -170.99                                   
REMARK 500  5 ALA A  75      167.62    -43.73                                   
REMARK 500  5 PRO A  78        0.41    -69.72                                   
REMARK 500  5 ASN A  81       48.47    -88.18                                   
REMARK 500  5 VAL A  95      -74.13    -91.93                                   
REMARK 500  6 SER A  11      116.93   -167.05                                   
REMARK 500  6 ARG A  49       27.40     45.73                                   
REMARK 500  6 LEU A  69       -9.90    -58.93                                   
REMARK 500  6 ARG A  72       76.04   -116.00                                   
REMARK 500  6 ASN A  81       47.37    -83.89                                   
REMARK 500  6 ARG A  84      178.87    -50.05                                   
REMARK 500  6 ALA A  93       49.74     74.77                                   
REMARK 500  6 ARG A 120      159.24    -41.15                                   
REMARK 500  7 GLN A  38      133.06   -174.26                                   
REMARK 500  7 ALA A  74      133.15   -174.76                                   
REMARK 500  7 ALA A  75      164.00    -42.31                                   
REMARK 500  7 PRO A  78        1.54    -69.74                                   
REMARK 500  7 ARG A  84     -178.02    -63.33                                   
REMARK 500  7 LYS A  85      -60.50   -127.04                                   
REMARK 500  7 VAL A  95      -64.00    -99.93                                   
REMARK 500  7 ARG A  96     -175.76   -174.13                                   
REMARK 500  8 ARG A  49       26.26     46.09                                   
REMARK 500  8 GLU A  57       38.06    -83.00                                   
REMARK 500  8 ALA A  75      158.52    -47.03                                   
REMARK 500  8 ASN A  81       55.25    -90.63                                   
REMARK 500  8 ARG A  96     -179.89   -176.87                                   
REMARK 500  8 ARG A 120      162.98    -44.02                                   
REMARK 500  9 VAL A  36      171.06    -48.09                                   
REMARK 500  9 ARG A  49       27.28     45.70                                   
REMARK 500  9 GLU A  57       44.10    -79.76                                   
REMARK 500  9 PRO A  78        3.19    -69.78                                   
REMARK 500  9 ASN A  81       46.45    -85.78                                   
REMARK 500  9 ALA A  93       41.98     73.57                                   
REMARK 500  9 VAL A  95      -65.60   -109.91                                   
REMARK 500  9 ARG A  96     -178.36   -174.64                                   
REMARK 500  9 ARG A 120      151.07    -36.52                                   
REMARK 500 10 SER A   6       56.00    -97.27                                   
REMARK 500 10 GLN A  31      141.92    -35.00                                   
REMARK 500 10 SER A  33      -56.96   -124.77                                   
REMARK 500 10 LYS A  37       98.19    -68.76                                   
REMARK 500 10 ARG A  49       27.92     44.22                                   
REMARK 500 10 PRO A  67       96.47    -69.72                                   
REMARK 500 10 LEU A  69       -9.42    -59.63                                   
REMARK 500 10 ALA A  74      132.35   -171.73                                   
REMARK 500 10 ALA A  75      156.53    -40.95                                   
REMARK 500 10 ASN A  81       35.23    -96.19                                   
REMARK 500 10 SER A  83       33.84    -95.06                                   
REMARK 500 10 LYS A  85      -73.96   -110.53                                   
REMARK 500 10 ALA A  93       92.99    -31.52                                   
REMARK 500 10 VAL A  95      -77.26   -131.58                                   
REMARK 500 11 SER A  13      106.14    -46.08                                   
REMARK 500 11 LYS A  37       83.66    -64.57                                   
REMARK 500 11 LEU A  69      -18.99    -47.81                                   
REMARK 500 11 VAL A  76      177.61    -58.79                                   
REMARK 500 11 ARG A  96     -178.51   -177.55                                   
REMARK 500 11 ARG A 120     -174.63    -57.53                                   
REMARK 500 12 SER A   3      147.65   -171.83                                   
REMARK 500 12 SER A   6      119.85   -163.86                                   
REMARK 500 12 ARG A  10       38.06    -88.36                                   
REMARK 500 12 ALA A  32       46.24    -86.66                                   
REMARK 500 12 VAL A  36      160.16    -43.18                                   
REMARK 500 12 ARG A  49       28.86     46.02                                   
REMARK 500 12 ASN A  81       46.32    -85.14                                   
REMARK 500 12 VAL A  95      -71.44   -104.97                                   
REMARK 500 13 VAL A  36      167.76    -49.80                                   
REMARK 500 13 ARG A  49       28.31     47.17                                   
REMARK 500 13 ALA A  74      128.14   -174.06                                   
REMARK 500 13 ALA A  75      160.27    -41.40                                   
REMARK 500 13 ASN A  81       46.81    -94.07                                   
REMARK 500 13 VAL A  95      -70.67   -109.92                                   
REMARK 500 14 ARG A  10      165.01    -44.23                                   
REMARK 500 14 LYS A  24      132.24   -173.76                                   
REMARK 500 14 GLN A  38      135.28   -170.42                                   
REMARK 500 14 VAL A  73      144.12    -33.69                                   
REMARK 500 14 ALA A  74      129.74   -174.92                                   
REMARK 500 14 ALA A  75      152.73    -39.45                                   
REMARK 500 14 VAL A  76     -176.38    -66.22                                   
REMARK 500 14 ASN A  81       47.29    -84.52                                   
REMARK 500 14 ALA A  93       37.24     70.79                                   
REMARK 500 14 VAL A  95      -63.89   -107.26                                   
REMARK 500 15 SER A   2       42.19     37.76                                   
REMARK 500 15 SER A  13      147.33   -173.38                                   
REMARK 500 15 VAL A  22      109.49    -52.82                                   
REMARK 500 15 GLN A  38      121.50   -174.98                                   
REMARK 500 15 ARG A  49       29.02     44.65                                   
REMARK 500 15 GLU A  57       41.87    -80.88                                   
REMARK 500 15 GLU A  60      -64.01   -106.23                                   
REMARK 500 15 PRO A  67       80.24    -69.72                                   
REMARK 500 15 LEU A  69      -18.14    -49.32                                   
REMARK 500 15 PRO A  78        2.11    -69.72                                   
REMARK 500 15 ASN A  81       38.52    -83.92                                   
REMARK 500 15 SER A  83       40.73    -81.81                                   
REMARK 500 15 LYS A  85      -66.45   -106.68                                   
REMARK 500 15 VAL A  95      -67.42   -103.68                                   
REMARK 500 15 ARG A  96     -177.22   -170.41                                   
REMARK 500 15 ILE A 112      -34.12    -39.84                                   
REMARK 500 16 SER A   5      119.60   -167.55                                   
REMARK 500 16 VAL A  36      149.99    -33.98                                   
REMARK 500 16 ARG A  49       29.79     44.59                                   
REMARK 500 16 LEU A  69      -19.57    -46.80                                   
REMARK 500 16 ALA A  74      136.59   -174.47                                   
REMARK 500 16 ALA A  75      162.70    -40.84                                   
REMARK 500 16 PRO A  78        1.36    -69.70                                   
REMARK 500 16 LYS A  85      -69.24    -96.63                                   
REMARK 500 16 HIS A  92      -75.05   -103.98                                   
REMARK 500 16 ALA A  93      105.00   -175.94                                   
REMARK 500 16 VAL A  95      -57.94   -132.64                                   
REMARK 500 17 ARG A  10       41.62    -85.03                                   
REMARK 500 17 LYS A  37       94.30    -67.85                                   
REMARK 500 17 ARG A  49       28.50     45.92                                   
REMARK 500 17 LYS A  55      -39.43    -38.43                                   
REMARK 500 17 GLU A  57       42.94    -80.75                                   
REMARK 500 17 PRO A  78        1.30    -69.72                                   
REMARK 500 17 ASN A  81       47.54    -90.86                                   
REMARK 500 17 VAL A  95      -69.31   -104.99                                   
REMARK 500 17 ARG A 120      150.04    -37.64                                   
REMARK 500 18 LYS A   9       83.23    -66.80                                   
REMARK 500 18 ARG A  10       42.31     37.17                                   
REMARK 500 18 HIS A  12      -52.49   -121.95                                   
REMARK 500 18 LYS A  37      104.43    -59.39                                   
REMARK 500 18 GLN A  38      132.20   -172.96                                   
REMARK 500 18 ARG A  49       27.45     45.14                                   
REMARK 500 18 GLU A  57       41.52    -81.43                                   
REMARK 500 18 GLU A  60      -64.86   -101.59                                   
REMARK 500 18 ALA A  74      143.83   -175.03                                   
REMARK 500 18 PRO A  78        2.86    -69.78                                   
REMARK 500 18 SER A  83       40.09    -83.68                                   
REMARK 500 18 HIS A  86       52.19     71.36                                   
REMARK 500 18 VAL A  95      -64.48   -107.46                                   
REMARK 500 18 ARG A  96     -179.34   -172.92                                   
REMARK 500 19 TRP A  39      159.11    -45.36                                   
REMARK 500 19 ARG A  49       27.10     45.51                                   
REMARK 500 19 LYS A  55      -37.20    -38.35                                   
REMARK 500 19 VAL A  76      178.48    -48.46                                   
REMARK 500 19 SER A  79       40.46     75.00                                   
REMARK 500 19 VAL A  95      -65.20   -109.74                                   
REMARK 500 19 ARG A  96     -178.30   -175.24                                   
REMARK 500 20 ARG A  49       27.96     45.45                                   
REMARK 500 20 GLU A  59       54.99     32.82                                   
REMARK 500 20 ASN A  81       49.06    -83.15                                   
REMARK 500 20 LYS A  85      -66.96   -109.91                                   
REMARK 500 20 ALA A  93       93.43    -34.97                                   
REMARK 500 20 VAL A  95      -75.06   -127.61                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 650                                                                      
REMARK 650 HELIX                                                                
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED                              
REMARK 700                                                                      
REMARK 700 SHEET                                                                
REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED                              
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSK002000946.2   RELATED DB: TARGETDB                    
DBREF  2YRY A    8   122  UNP    Q9Y2H5   PKHA6_HUMAN     46    160             
SEQADV 2YRY GLY A    1  UNP  Q9Y2H5              EXPRESSION TAG                 
SEQADV 2YRY SER A    2  UNP  Q9Y2H5              EXPRESSION TAG                 
SEQADV 2YRY SER A    3  UNP  Q9Y2H5              EXPRESSION TAG                 
SEQADV 2YRY GLY A    4  UNP  Q9Y2H5              EXPRESSION TAG                 
SEQADV 2YRY SER A    5  UNP  Q9Y2H5              EXPRESSION TAG                 
SEQADV 2YRY SER A    6  UNP  Q9Y2H5              EXPRESSION TAG                 
SEQADV 2YRY GLY A    7  UNP  Q9Y2H5              EXPRESSION TAG                 
SEQRES   1 A  122  GLY SER SER GLY SER SER GLY GLY LYS ARG SER HIS SER          
SEQRES   2 A  122  MET LYS ARG ASN PRO ASN ALA PRO VAL THR LYS ALA GLY          
SEQRES   3 A  122  TRP LEU PHE LYS GLN ALA SER SER GLY VAL LYS GLN TRP          
SEQRES   4 A  122  ASN LYS ARG TRP PHE VAL LEU VAL ASP ARG CYS LEU PHE          
SEQRES   5 A  122  TYR TYR LYS ASP GLU LYS GLU GLU SER ILE LEU GLY SER          
SEQRES   6 A  122  ILE PRO LEU LEU SER PHE ARG VAL ALA ALA VAL GLN PRO          
SEQRES   7 A  122  SER ASP ASN ILE SER ARG LYS HIS THR PHE LYS ALA GLU          
SEQRES   8 A  122  HIS ALA GLY VAL ARG THR TYR PHE PHE SER ALA GLU SER          
SEQRES   9 A  122  PRO GLU GLU GLN GLU ALA TRP ILE GLN ALA MET GLY GLU          
SEQRES  10 A  122  ALA ALA ARG VAL GLN                                          
HELIX    1   1 PRO A  105  ALA A  119  1                                  15    
SHEET    1   A 7 GLY A  64  PRO A  67  0                                        
SHEET    2   A 7 CYS A  50  TYR A  54 -1  N  LEU A  51   O  ILE A  66           
SHEET    3   A 7 TRP A  39  VAL A  47 -1  N  VAL A  45   O  PHE A  52           
SHEET    4   A 7 VAL A  22  GLN A  31 -1  N  LYS A  24   O  LEU A  46           
SHEET    5   A 7 THR A  97  SER A 101 -1  O  SER A 101   N  PHE A  29           
SHEET    6   A 7 THR A  87  GLU A  91 -1  N  PHE A  88   O  PHE A 100           
SHEET    7   A 7 ARG A  72  ALA A  75 -1  N  ALA A  74   O  LYS A  89           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000