PDB Short entry for 2YRZ HEADER CELL ADHESION 03-APR-07 2YRZ TITLE SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE III DOMAIN OF HUMAN TITLE 2 INTEGRIN BETA-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3; COMPND 5 SYNONYM: GP150, CD104 ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGB4; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050322-10; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS GP150, CD104 ANTIGEN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ABE,A.SASAGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YRZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YRZ 1 VERSN REVDAT 1 08-APR-08 2YRZ 0 JRNL AUTH H.ABE,A.SASAGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE III DOMAIN OF JRNL TITL 2 HUMAN INTEGRIN BETA-4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YRZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027059. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.21MM SAMPLE U-15N,13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 8 166.02 -42.97 REMARK 500 1 HIS A 9 43.56 -97.73 REMARK 500 1 SER A 11 -34.40 -134.02 REMARK 500 1 LEU A 13 152.42 -44.96 REMARK 500 1 ARG A 23 159.90 -43.36 REMARK 500 1 GLU A 40 104.42 -45.77 REMARK 500 1 CYS A 43 116.07 -165.97 REMARK 500 1 PRO A 68 3.03 -69.72 REMARK 500 1 GLN A 95 -28.47 -39.01 REMARK 500 1 SER A 113 42.63 -108.70 REMARK 500 1 PRO A 115 -179.11 -69.73 REMARK 500 2 SER A 3 42.20 38.20 REMARK 500 2 ASP A 10 59.55 -111.92 REMARK 500 2 SER A 11 -71.24 -71.23 REMARK 500 2 ARG A 12 44.83 -81.49 REMARK 500 2 ASP A 19 174.25 -52.84 REMARK 500 2 THR A 22 172.92 -56.13 REMARK 500 2 ARG A 23 160.85 -44.43 REMARK 500 2 GLU A 40 105.97 -48.61 REMARK 500 2 PRO A 68 3.75 -69.76 REMARK 500 2 PRO A 115 2.50 -69.71 REMARK 500 2 SER A 116 132.97 -34.50 REMARK 500 2 SER A 117 138.99 -39.90 REMARK 500 3 SER A 3 116.79 -35.34 REMARK 500 3 SER A 6 44.28 34.39 REMARK 500 3 ARG A 23 154.97 -49.92 REMARK 500 3 GLU A 40 107.45 -52.10 REMARK 500 3 CYS A 43 114.97 -172.46 REMARK 500 3 PRO A 68 2.92 -69.73 REMARK 500 3 THR A 73 33.89 -95.94 REMARK 500 4 THR A 20 126.35 -37.79 REMARK 500 4 THR A 22 177.14 -48.67 REMARK 500 4 GLU A 40 106.96 -46.94 REMARK 500 4 LEU A 56 118.82 -39.87 REMARK 500 4 PRO A 68 3.35 -69.78 REMARK 500 4 THR A 73 35.97 -98.43 REMARK 500 5 SER A 2 98.89 -51.47 REMARK 500 5 SER A 5 43.81 -100.63 REMARK 500 5 SER A 11 149.86 -38.63 REMARK 500 5 ARG A 12 149.07 -37.08 REMARK 500 5 LEU A 13 35.22 -86.77 REMARK 500 5 ASP A 19 170.30 -57.92 REMARK 500 5 ARG A 23 155.80 -41.36 REMARK 500 5 GLU A 40 106.38 -49.54 REMARK 500 5 CYS A 43 111.52 -162.38 REMARK 500 5 PRO A 68 3.13 -69.74 REMARK 500 5 THR A 73 32.81 -97.46 REMARK 500 5 SER A 113 42.36 -94.71 REMARK 500 5 PRO A 115 88.09 -69.70 REMARK 500 6 ASP A 19 175.64 -51.45 REMARK 500 REMARK 500 THIS ENTRY HAS 178 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002002365.1 RELATED DB: TARGETDB DBREF 2YRZ A 8 112 UNP P16144 ITB4_HUMAN 1518 1622 SEQADV 2YRZ GLY A 1 UNP P16144 EXPRESSION TAG SEQADV 2YRZ SER A 2 UNP P16144 EXPRESSION TAG SEQADV 2YRZ SER A 3 UNP P16144 EXPRESSION TAG SEQADV 2YRZ GLY A 4 UNP P16144 EXPRESSION TAG SEQADV 2YRZ SER A 5 UNP P16144 EXPRESSION TAG SEQADV 2YRZ SER A 6 UNP P16144 EXPRESSION TAG SEQADV 2YRZ GLY A 7 UNP P16144 EXPRESSION TAG SEQADV 2YRZ SER A 113 UNP P16144 EXPRESSION TAG SEQADV 2YRZ GLY A 114 UNP P16144 EXPRESSION TAG SEQADV 2YRZ PRO A 115 UNP P16144 EXPRESSION TAG SEQADV 2YRZ SER A 116 UNP P16144 EXPRESSION TAG SEQADV 2YRZ SER A 117 UNP P16144 EXPRESSION TAG SEQADV 2YRZ GLY A 118 UNP P16144 EXPRESSION TAG SEQRES 1 A 118 GLY SER SER GLY SER SER GLY SER HIS ASP SER ARG LEU SEQRES 2 A 118 THR ALA GLY VAL PRO ASP THR PRO THR ARG LEU VAL PHE SEQRES 3 A 118 SER ALA LEU GLY PRO THR SER LEU ARG VAL SER TRP GLN SEQRES 4 A 118 GLU PRO ARG CYS GLU ARG PRO LEU GLN GLY TYR SER VAL SEQRES 5 A 118 GLU TYR GLN LEU LEU ASN GLY GLY GLU LEU HIS ARG LEU SEQRES 6 A 118 ASN ILE PRO ASN PRO ALA GLN THR SER VAL VAL VAL GLU SEQRES 7 A 118 ASP LEU LEU PRO ASN HIS SER TYR VAL PHE ARG VAL ARG SEQRES 8 A 118 ALA GLN SER GLN GLU GLY TRP GLY ARG GLU ARG GLU GLY SEQRES 9 A 118 VAL ILE THR ILE GLU SER GLN VAL SER GLY PRO SER SER SEQRES 10 A 118 GLY SHEET 1 A 3 VAL A 25 PHE A 26 0 SHEET 2 A 3 SER A 33 SER A 37 -1 O SER A 37 N VAL A 25 SHEET 3 A 3 SER A 74 GLU A 78 -1 O VAL A 75 N VAL A 36 SHEET 1 B 4 LEU A 62 ILE A 67 0 SHEET 2 B 4 LEU A 47 GLN A 55 -1 N VAL A 52 O LEU A 65 SHEET 3 B 4 SER A 85 SER A 94 -1 O ARG A 89 N GLU A 53 SHEET 4 B 4 TRP A 98 THR A 107 -1 O GLY A 104 N PHE A 88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000