PDB Short entry for 2YUX HEADER CELL ADHESION 06-APR-07 2YUX TITLE SOLUTION STRUCTURE OF 3RD FIBRONECTIN TYPE THREE DOMAIN OF SLOW TYPE TITLE 2 MYOSIN-BINDING PROTEIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-BINDING PROTEIN C, SLOW-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN III DOMAIN; COMPND 5 SYNONYM: SLOW MYBP-C, C-PROTEIN, SKELETAL MUSCLE SLOW ISOFORM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYBPC1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060417-14; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS FIBRONECTIN III DOMAIN, MYOSIN-BINDING PROTEIN C, SLOW-TYPE, KEYWDS 2 STRUCTURAL GENOMICS., NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.N.NIRAULA,N.TOCHIO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YUX 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YUX 1 VERSN REVDAT 1 08-APR-08 2YUX 0 JRNL AUTH T.N.NIRAULA,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF 3RD FIBRONECTIN TYPE THREE DOMAIN OF JRNL TITL 2 SLOW TYPE MYOSIN-BINDING PROTEIN C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YUX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027165. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM SAMPLE U-15N, 13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 100 O ASP A 102 1.46 REMARK 500 H LYS A 25 O THR A 37 1.49 REMARK 500 HG1 THR A 53 OE1 GLU A 69 1.52 REMARK 500 O LYS A 25 H THR A 37 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 120.88 -177.86 REMARK 500 1 ASP A 16 159.52 175.15 REMARK 500 1 ASP A 28 -179.20 172.83 REMARK 500 1 ASP A 43 -71.76 -87.49 REMARK 500 1 ASP A 44 58.84 39.66 REMARK 500 1 ASN A 46 -65.44 178.51 REMARK 500 1 ILE A 49 95.24 -47.04 REMARK 500 1 THR A 66 114.76 -39.96 REMARK 500 1 HIS A 72 -70.24 -130.23 REMARK 500 1 ARG A 73 173.62 -57.12 REMARK 500 1 ASN A 95 -56.86 168.53 REMARK 500 1 MET A 96 -42.40 -161.68 REMARK 500 1 ALA A 113 148.13 -175.51 REMARK 500 2 SER A 9 137.35 -177.50 REMARK 500 2 ILE A 12 84.35 38.32 REMARK 500 2 ILE A 15 179.08 -50.91 REMARK 500 2 ASP A 16 174.99 81.36 REMARK 500 2 ASP A 28 170.99 170.94 REMARK 500 2 SER A 61 14.98 -141.58 REMARK 500 2 PHE A 65 -83.70 -140.24 REMARK 500 2 HIS A 72 -62.93 -126.45 REMARK 500 2 ARG A 73 170.37 -45.46 REMARK 500 2 ASN A 95 -164.91 177.97 REMARK 500 2 CYS A 97 -73.53 -159.46 REMARK 500 2 ASP A 115 126.84 -170.17 REMARK 500 2 ILE A 118 130.73 61.96 REMARK 500 3 SER A 2 92.95 48.23 REMARK 500 3 SER A 5 -58.97 -135.15 REMARK 500 3 ALA A 8 90.10 -175.08 REMARK 500 3 SER A 9 -54.60 177.88 REMARK 500 3 ILE A 12 83.65 -69.35 REMARK 500 3 ASP A 16 162.17 168.51 REMARK 500 3 ARG A 17 170.19 -45.27 REMARK 500 3 ASP A 28 175.90 174.33 REMARK 500 3 GLU A 32 40.48 -95.51 REMARK 500 3 ASP A 44 103.17 -165.96 REMARK 500 3 ALA A 47 91.01 75.34 REMARK 500 3 SER A 61 22.69 -150.87 REMARK 500 3 PHE A 65 -83.90 -132.62 REMARK 500 3 THR A 66 138.79 170.78 REMARK 500 3 ASN A 95 175.21 168.10 REMARK 500 3 CYS A 97 -77.73 -75.61 REMARK 500 3 ASP A 115 115.84 -160.29 REMARK 500 3 ILE A 118 131.97 69.42 REMARK 500 4 SER A 2 169.17 55.38 REMARK 500 4 SER A 3 -59.68 -139.50 REMARK 500 4 ASP A 11 154.40 62.49 REMARK 500 4 ILE A 12 85.55 38.39 REMARK 500 4 ASP A 16 164.38 172.44 REMARK 500 4 ASP A 28 176.54 172.79 REMARK 500 REMARK 500 THIS ENTRY HAS 368 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000567.7 RELATED DB: TARGETDB DBREF 2YUX A 8 120 UNP Q00872 MYPC1_HUMAN 922 1034 SEQADV 2YUX GLY A 1 UNP Q00872 EXPRESSION TAG SEQADV 2YUX SER A 2 UNP Q00872 EXPRESSION TAG SEQADV 2YUX SER A 3 UNP Q00872 EXPRESSION TAG SEQADV 2YUX GLY A 4 UNP Q00872 EXPRESSION TAG SEQADV 2YUX SER A 5 UNP Q00872 EXPRESSION TAG SEQADV 2YUX SER A 6 UNP Q00872 EXPRESSION TAG SEQADV 2YUX GLY A 7 UNP Q00872 EXPRESSION TAG SEQRES 1 A 120 GLY SER SER GLY SER SER GLY ALA SER ILE ASP ILE GLN SEQRES 2 A 120 ILE ILE ASP ARG PRO GLY PRO PRO GLN ILE VAL LYS ILE SEQRES 3 A 120 GLU ASP VAL TRP GLY GLU ASN VAL ALA LEU THR TRP THR SEQRES 4 A 120 PRO PRO LYS ASP ASP GLY ASN ALA ALA ILE THR GLY TYR SEQRES 5 A 120 THR ILE GLN LYS ALA ASP LYS LYS SER MET GLU TRP PHE SEQRES 6 A 120 THR VAL ILE GLU HIS TYR HIS ARG THR SER ALA THR ILE SEQRES 7 A 120 THR GLU LEU VAL ILE GLY ASN GLU TYR TYR PHE ARG VAL SEQRES 8 A 120 PHE SER GLU ASN MET CYS GLY LEU SER GLU ASP ALA THR SEQRES 9 A 120 MET THR LYS GLU SER ALA VAL ILE ALA ARG ASP GLY LYS SEQRES 10 A 120 ILE TYR LYS SHEET 1 A 3 VAL A 24 TRP A 30 0 SHEET 2 A 3 ASN A 33 TRP A 38 -1 O THR A 37 N LYS A 25 SHEET 3 A 3 THR A 77 ILE A 78 -1 O ILE A 78 N VAL A 34 SHEET 1 B 4 PHE A 65 ILE A 68 0 SHEET 2 B 4 ILE A 54 ASP A 58 -1 N ILE A 54 O VAL A 67 SHEET 3 B 4 ASN A 85 VAL A 91 -1 O TYR A 88 N ALA A 57 SHEET 4 B 4 THR A 104 MET A 105 -1 O THR A 104 N VAL A 91 SHEET 1 C 4 PHE A 65 ILE A 68 0 SHEET 2 C 4 ILE A 54 ASP A 58 -1 N ILE A 54 O VAL A 67 SHEET 3 C 4 ASN A 85 VAL A 91 -1 O TYR A 88 N ALA A 57 SHEET 4 C 4 ALA A 110 ILE A 112 -1 O ILE A 112 N ASN A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000