PDB Short entry for 2YW8 HEADER METAL BINDING PROTEIN 20-APR-07 2YW8 TITLE CRYSTAL STRUCTURE OF HUMAN RUN AND FYVE DOMAIN-CONTAINING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUN AND FYVE DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 627-708; COMPND 5 SYNONYM: FYVE-FINGER PROTEIN EIP1, ZINC FINGER FYVE DOMAIN-CONTAINING COMPND 6 PROTEIN 12, LA-BINDING PROTEIN 1, RAB4-INTERACTING PROTEIN, MS1309 COMPND 7 PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RUFY1, RABIP4, ZFYVE12; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PK060327-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURE GENOMICS, FYVE DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL BINDING KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,S.KISHISHITA,K.MURAYAMA,C.TAKEMOTO,T.TERADA,M.SHIROUZU,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 25-OCT-23 2YW8 1 REMARK LINK REVDAT 2 24-FEB-09 2YW8 1 VERSN REVDAT 1 22-APR-08 2YW8 0 JRNL AUTH H.WANG,S.KISHISHITA,T.MURAYAMA,C.TAKEMOTO,T.TERADA,L.CHEN, JRNL AUTH 2 Z.Q.FU,J.CHRZAS,B.C.WANG,M.SHIROUZU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF HUMAN RUN AND FYVE DOMAIN-CONTAINING JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 44214.210 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 5593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 314 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 832 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.042 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 31.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000027212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2752 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5650 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 40.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 42.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 12.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VFY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, AMMONIUM SULFATE, PH6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.57500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.57500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 57.57500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 57.57500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 57.57500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 57.57500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 57.57500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 57.57500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 57.57500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 57.57500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 28.78750 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 86.36250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 86.36250 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 28.78750 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 28.78750 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 28.78750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 86.36250 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 86.36250 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 28.78750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 86.36250 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 28.78750 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 86.36250 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 28.78750 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 86.36250 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 86.36250 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 86.36250 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 28.78750 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 86.36250 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 28.78750 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 28.78750 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 28.78750 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 86.36250 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 86.36250 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 28.78750 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 28.78750 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 86.36250 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 86.36250 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 86.36250 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 86.36250 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 28.78750 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 86.36250 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 28.78750 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 86.36250 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 28.78750 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 28.78750 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 28.78750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 LEU A 8 REMARK 465 LYS A 9 REMARK 465 GLY A 10 REMARK 465 HIS A 11 REMARK 465 ALA A 12 REMARK 465 TRP A 13 REMARK 465 LEU A 14 REMARK 465 ARG A 76 REMARK 465 CYS A 77 REMARK 465 SER A 78 REMARK 465 SER A 79 REMARK 465 THR A 80 REMARK 465 ALA A 81 REMARK 465 SER A 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 24 -72.97 -86.68 REMARK 500 PRO A 57 -63.81 -29.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 22 SG REMARK 620 2 CYS A 25 SG 114.5 REMARK 620 3 CYS A 46 SG 116.7 112.7 REMARK 620 4 CYS A 49 SG 109.4 103.4 97.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 CYS A 41 SG 108.4 REMARK 620 3 CYS A 66 SG 103.4 123.8 REMARK 620 4 CYS A 69 SG 103.1 117.8 97.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSG002000371.1 RELATED DB: TARGETDB DBREF 2YW8 A 1 82 UNP Q96T51 RUFY1_HUMAN 627 708 SEQRES 1 A 82 ILE LYS GLU VAL ASN GLN ALA LEU LYS GLY HIS ALA TRP SEQRES 2 A 82 LEU LYS ASP ASP GLU ALA THR HIS CYS ARG GLN CYS GLU SEQRES 3 A 82 LYS GLU PHE SER ILE SER ARG ARG LYS HIS HIS CYS ARG SEQRES 4 A 82 ASN CYS GLY HIS ILE PHE CYS ASN THR CYS SER SER ASN SEQRES 5 A 82 GLU LEU ALA LEU PRO SER TYR PRO LYS PRO VAL ARG VAL SEQRES 6 A 82 CYS ASP SER CYS HIS THR LEU LEU LEU GLN ARG CYS SER SEQRES 7 A 82 SER THR ALA SER HET ZN A 300 1 HET ZN A 301 1 HET SO4 A 303 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *34(H2 O) HELIX 1 1 ASN A 47 SER A 51 5 5 HELIX 2 2 CYS A 66 LEU A 73 1 8 SHEET 1 A 2 HIS A 36 HIS A 37 0 SHEET 2 A 2 ILE A 44 PHE A 45 -1 O PHE A 45 N HIS A 36 SHEET 1 B 2 ASN A 52 LEU A 54 0 SHEET 2 B 2 VAL A 63 VAL A 65 -1 O VAL A 65 N ASN A 52 LINK SG CYS A 22 ZN ZN A 301 1555 1555 2.37 LINK SG CYS A 25 ZN ZN A 301 1555 1555 2.45 LINK SG CYS A 38 ZN ZN A 300 1555 1555 2.49 LINK SG CYS A 41 ZN ZN A 300 1555 1555 2.33 LINK SG CYS A 46 ZN ZN A 301 1555 1555 2.43 LINK SG CYS A 49 ZN ZN A 301 1555 1555 2.41 LINK SG CYS A 66 ZN ZN A 300 1555 1555 2.39 LINK SG CYS A 69 ZN ZN A 300 1555 1555 2.31 SITE 1 AC1 4 CYS A 38 CYS A 41 CYS A 66 CYS A 69 SITE 1 AC2 4 CYS A 22 CYS A 25 CYS A 46 CYS A 49 SITE 1 AC3 4 HIS A 36 HIS A 37 ARG A 39 ARG A 64 CRYST1 115.150 115.150 115.150 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008684 0.00000