PDB Short entry for 2Z4S HEADER DNA BINDING PROTEIN 25-JUN-07 2Z4S TITLE CRYSTAL STRUCTURE OF DOMAIN III FROM THE THERMOTOGA MARITIMA TITLE 2 REPLICATION INITIATION PROTEIN DNAA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: DNAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MC1061; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD18 KEYWDS AAA+ ATPASE, DOMAIN III (ATPASE DOMAIN), ATP-BINDING, CYTOPLASM, DNA KEYWDS 2 REPLICATION, DNA-BINDING, NUCLEOTIDE-BINDING, DNA BINDING PROTEIN, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR N.FUJIKAWA,S.OZAKI,W.KAGAWA,S.-Y.PARK,T.KATAYAMA,H.KURUMIZAKA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 01-NOV-23 2Z4S 1 REMARK REVDAT 3 24-FEB-09 2Z4S 1 VERSN REVDAT 2 08-APR-08 2Z4S 1 JRNL REVDAT 1 19-FEB-08 2Z4S 0 JRNL AUTH S.OZAKI,H.KAWAKAMI,K.NAKAMURA,N.FUJIKAWA,W.KAGAWA,S.-Y.PARK, JRNL AUTH 2 S.YOKOYAMA,H.KURUMIZAKA,T.KATAYAMA JRNL TITL A COMMON MECHANISM FOR THE ATP-DNAA-DEPENDENT FORMATION OF JRNL TITL 2 OPEN COMPLEXES AT THE REPLICATION ORIGIN JRNL REF J.BIOL.CHEM. V. 283 8351 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18216012 JRNL DOI 10.1074/JBC.M708684200 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 10290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1057 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.56 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.78 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.360 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.966 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000027520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1L8Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M LITHIUM SULFATE, 0.05M MAGNESIUM REMARK 280 SULFATE, 0.05M NA-HEPES PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 110.90850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.03305 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 18.53400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 110.90850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 64.03305 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 18.53400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 110.90850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 64.03305 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 18.53400 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 110.90850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 64.03305 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 18.53400 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 110.90850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 64.03305 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 18.53400 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 110.90850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 64.03305 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 18.53400 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 128.06610 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 37.06800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 128.06610 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 37.06800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 128.06610 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 37.06800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 128.06610 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 37.06800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 128.06610 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 37.06800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 128.06610 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 37.06800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 ILE A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 ILE A 9 REMARK 465 LYS A 10 REMARK 465 THR A 11 REMARK 465 ARG A 12 REMARK 465 VAL A 13 REMARK 465 ASN A 14 REMARK 465 ARG A 15 REMARK 465 LYS A 16 REMARK 465 SER A 17 REMARK 465 TRP A 18 REMARK 465 GLU A 19 REMARK 465 LEU A 20 REMARK 465 TRP A 21 REMARK 465 PHE A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 PHE A 25 REMARK 465 ASP A 26 REMARK 465 VAL A 27 REMARK 465 LYS A 28 REMARK 465 SER A 29 REMARK 465 ILE A 30 REMARK 465 GLU A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 33 REMARK 465 LYS A 34 REMARK 465 VAL A 35 REMARK 465 VAL A 36 REMARK 465 PHE A 37 REMARK 465 SER A 38 REMARK 465 VAL A 39 REMARK 465 GLY A 40 REMARK 465 ASN A 41 REMARK 465 LEU A 42 REMARK 465 PHE A 43 REMARK 465 ILE A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 TRP A 47 REMARK 465 LEU A 48 REMARK 465 GLU A 49 REMARK 465 LYS A 50 REMARK 465 LYS A 51 REMARK 465 TYR A 52 REMARK 465 TYR A 53 REMARK 465 SER A 54 REMARK 465 VAL A 55 REMARK 465 LEU A 56 REMARK 465 SER A 57 REMARK 465 LYS A 58 REMARK 465 ALA A 59 REMARK 465 VAL A 60 REMARK 465 LYS A 61 REMARK 465 VAL A 62 REMARK 465 VAL A 63 REMARK 465 LEU A 64 REMARK 465 GLY A 65 REMARK 465 ASN A 66 REMARK 465 ASP A 67 REMARK 465 ALA A 68 REMARK 465 THR A 69 REMARK 465 PHE A 70 REMARK 465 GLU A 71 REMARK 465 ILE A 72 REMARK 465 THR A 73 REMARK 465 TYR A 74 REMARK 465 GLU A 75 REMARK 465 ALA A 76 REMARK 465 PHE A 77 REMARK 465 GLU A 78 REMARK 465 PRO A 79 REMARK 465 HIS A 80 REMARK 465 SER A 81 REMARK 465 SER A 82 REMARK 465 TYR A 83 REMARK 465 SER A 84 REMARK 465 GLU A 85 REMARK 465 PRO A 86 REMARK 465 LEU A 87 REMARK 465 VAL A 88 REMARK 465 LYS A 89 REMARK 465 LYS A 90 REMARK 465 ARG A 91 REMARK 465 ALA A 92 REMARK 465 VAL A 93 REMARK 465 LEU A 94 REMARK 465 LEU A 95 REMARK 465 ASN A 336 REMARK 465 ARG A 337 REMARK 465 VAL A 338 REMARK 465 LYS A 339 REMARK 465 ALA A 340 REMARK 465 MET A 341 REMARK 465 ASP A 342 REMARK 465 PRO A 343 REMARK 465 ILE A 344 REMARK 465 ASP A 345 REMARK 465 GLU A 346 REMARK 465 LEU A 347 REMARK 465 ILE A 348 REMARK 465 GLU A 349 REMARK 465 ILE A 350 REMARK 465 VAL A 351 REMARK 465 ALA A 352 REMARK 465 LYS A 353 REMARK 465 VAL A 354 REMARK 465 THR A 355 REMARK 465 GLY A 356 REMARK 465 VAL A 357 REMARK 465 PRO A 358 REMARK 465 ARG A 359 REMARK 465 GLU A 360 REMARK 465 GLU A 361 REMARK 465 ILE A 362 REMARK 465 LEU A 363 REMARK 465 SER A 364 REMARK 465 ASN A 365 REMARK 465 SER A 366 REMARK 465 ARG A 367 REMARK 465 ASN A 368 REMARK 465 VAL A 369 REMARK 465 LYS A 370 REMARK 465 ALA A 371 REMARK 465 LEU A 372 REMARK 465 THR A 373 REMARK 465 ALA A 374 REMARK 465 ARG A 375 REMARK 465 ARG A 376 REMARK 465 ILE A 377 REMARK 465 GLY A 378 REMARK 465 MET A 379 REMARK 465 TYR A 380 REMARK 465 VAL A 381 REMARK 465 ALA A 382 REMARK 465 LYS A 383 REMARK 465 ASN A 384 REMARK 465 TYR A 385 REMARK 465 LEU A 386 REMARK 465 LYS A 387 REMARK 465 SER A 388 REMARK 465 SER A 389 REMARK 465 LEU A 390 REMARK 465 ARG A 391 REMARK 465 THR A 392 REMARK 465 ILE A 393 REMARK 465 ALA A 394 REMARK 465 GLU A 395 REMARK 465 LYS A 396 REMARK 465 PHE A 397 REMARK 465 ASN A 398 REMARK 465 ARG A 399 REMARK 465 SER A 400 REMARK 465 HIS A 401 REMARK 465 PRO A 402 REMARK 465 VAL A 403 REMARK 465 VAL A 404 REMARK 465 VAL A 405 REMARK 465 ASP A 406 REMARK 465 SER A 407 REMARK 465 VAL A 408 REMARK 465 LYS A 409 REMARK 465 LYS A 410 REMARK 465 VAL A 411 REMARK 465 LYS A 412 REMARK 465 ASP A 413 REMARK 465 SER A 414 REMARK 465 LEU A 415 REMARK 465 LEU A 416 REMARK 465 LYS A 417 REMARK 465 GLY A 418 REMARK 465 ASN A 419 REMARK 465 LYS A 420 REMARK 465 GLN A 421 REMARK 465 LEU A 422 REMARK 465 LYS A 423 REMARK 465 ALA A 424 REMARK 465 LEU A 425 REMARK 465 ILE A 426 REMARK 465 ASP A 427 REMARK 465 GLU A 428 REMARK 465 VAL A 429 REMARK 465 ILE A 430 REMARK 465 GLY A 431 REMARK 465 GLU A 432 REMARK 465 ILE A 433 REMARK 465 SER A 434 REMARK 465 ARG A 435 REMARK 465 ARG A 436 REMARK 465 ALA A 437 REMARK 465 LEU A 438 REMARK 465 SER A 439 REMARK 465 GLY A 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 97 63.19 -100.49 REMARK 500 ASP A 160 49.98 -83.02 REMARK 500 LYS A 180 -75.17 -59.79 REMARK 500 GLU A 181 -5.57 -54.75 REMARK 500 LYS A 183 81.36 -151.94 REMARK 500 ARG A 192 -93.10 -138.08 REMARK 500 LYS A 193 -58.65 -20.10 REMARK 500 LYS A 194 45.73 -99.13 REMARK 500 ASP A 202 85.19 29.32 REMARK 500 LYS A 209 55.54 -66.33 REMARK 500 MET A 254 18.41 -65.16 REMARK 500 HIS A 280 18.03 55.47 REMARK 500 GLU A 285 22.09 -55.03 REMARK 500 VAL A 295 76.65 -108.46 REMARK 500 ASP A 297 -98.12 -65.95 REMARK 500 GLU A 314 -77.30 -77.72 REMARK 500 THR A 315 -83.50 -47.74 REMARK 500 THR A 316 88.49 -48.03 REMARK 500 GLU A 319 -165.38 -74.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 144 OG1 REMARK 620 2 ADP A 501 O3B 75.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z4R RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A DIFFERENT SPACE GROUP REMARK 900 RELATED ID: TRT001000473.2 RELATED DB: TARGETDB DBREF 2Z4S A 1 440 UNP P46798 DNAA_THEMA 1 440 SEQRES 1 A 440 MET LYS GLU ARG ILE LEU GLN GLU ILE LYS THR ARG VAL SEQRES 2 A 440 ASN ARG LYS SER TRP GLU LEU TRP PHE SER SER PHE ASP SEQRES 3 A 440 VAL LYS SER ILE GLU GLY ASN LYS VAL VAL PHE SER VAL SEQRES 4 A 440 GLY ASN LEU PHE ILE LYS GLU TRP LEU GLU LYS LYS TYR SEQRES 5 A 440 TYR SER VAL LEU SER LYS ALA VAL LYS VAL VAL LEU GLY SEQRES 6 A 440 ASN ASP ALA THR PHE GLU ILE THR TYR GLU ALA PHE GLU SEQRES 7 A 440 PRO HIS SER SER TYR SER GLU PRO LEU VAL LYS LYS ARG SEQRES 8 A 440 ALA VAL LEU LEU THR PRO LEU ASN PRO ASP TYR THR PHE SEQRES 9 A 440 GLU ASN PHE VAL VAL GLY PRO GLY ASN SER PHE ALA TYR SEQRES 10 A 440 HIS ALA ALA LEU GLU VAL ALA LYS HIS PRO GLY ARG TYR SEQRES 11 A 440 ASN PRO LEU PHE ILE TYR GLY GLY VAL GLY LEU GLY LYS SEQRES 12 A 440 THR HIS LEU LEU GLN SER ILE GLY ASN TYR VAL VAL GLN SEQRES 13 A 440 ASN GLU PRO ASP LEU ARG VAL MET TYR ILE THR SER GLU SEQRES 14 A 440 LYS PHE LEU ASN ASP LEU VAL ASP SER MET LYS GLU GLY SEQRES 15 A 440 LYS LEU ASN GLU PHE ARG GLU LYS TYR ARG LYS LYS VAL SEQRES 16 A 440 ASP ILE LEU LEU ILE ASP ASP VAL GLN PHE LEU ILE GLY SEQRES 17 A 440 LYS THR GLY VAL GLN THR GLU LEU PHE HIS THR PHE ASN SEQRES 18 A 440 GLU LEU HIS ASP SER GLY LYS GLN ILE VAL ILE CYS SER SEQRES 19 A 440 ASP ARG GLU PRO GLN LYS LEU SER GLU PHE GLN ASP ARG SEQRES 20 A 440 LEU VAL SER ARG PHE GLN MET GLY LEU VAL ALA LYS LEU SEQRES 21 A 440 GLU PRO PRO ASP GLU GLU THR ARG LYS SER ILE ALA ARG SEQRES 22 A 440 LYS MET LEU GLU ILE GLU HIS GLY GLU LEU PRO GLU GLU SEQRES 23 A 440 VAL LEU ASN PHE VAL ALA GLU ASN VAL ASP ASP ASN LEU SEQRES 24 A 440 ARG ARG LEU ARG GLY ALA ILE ILE LYS LEU LEU VAL TYR SEQRES 25 A 440 LYS GLU THR THR GLY LYS GLU VAL ASP LEU LYS GLU ALA SEQRES 26 A 440 ILE LEU LEU LEU LYS ASP PHE ILE LYS PRO ASN ARG VAL SEQRES 27 A 440 LYS ALA MET ASP PRO ILE ASP GLU LEU ILE GLU ILE VAL SEQRES 28 A 440 ALA LYS VAL THR GLY VAL PRO ARG GLU GLU ILE LEU SER SEQRES 29 A 440 ASN SER ARG ASN VAL LYS ALA LEU THR ALA ARG ARG ILE SEQRES 30 A 440 GLY MET TYR VAL ALA LYS ASN TYR LEU LYS SER SER LEU SEQRES 31 A 440 ARG THR ILE ALA GLU LYS PHE ASN ARG SER HIS PRO VAL SEQRES 32 A 440 VAL VAL ASP SER VAL LYS LYS VAL LYS ASP SER LEU LEU SEQRES 33 A 440 LYS GLY ASN LYS GLN LEU LYS ALA LEU ILE ASP GLU VAL SEQRES 34 A 440 ILE GLY GLU ILE SER ARG ARG ALA LEU SER GLY HET MG A 500 1 HET ADP A 501 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 HELIX 1 1 THR A 103 PHE A 107 5 5 HELIX 2 2 ASN A 113 HIS A 126 1 14 HELIX 3 3 GLY A 142 GLU A 158 1 17 HELIX 4 4 SER A 168 GLU A 181 1 14 HELIX 5 5 LYS A 183 ARG A 192 1 10 HELIX 6 6 ASP A 202 ILE A 207 5 6 HELIX 7 7 LYS A 209 ASP A 225 1 17 HELIX 8 8 GLU A 237 LEU A 241 5 5 HELIX 9 9 GLN A 245 MET A 254 1 10 HELIX 10 10 ASP A 264 HIS A 280 1 17 HELIX 11 11 GLU A 286 VAL A 295 1 10 HELIX 12 12 ASN A 298 THR A 316 1 19 HELIX 13 13 ASP A 321 LEU A 329 1 9 SHEET 1 A 4 LEU A 133 TYR A 136 0 SHEET 2 A 4 GLN A 229 SER A 234 1 O ILE A 232 N LEU A 133 SHEET 3 A 4 ILE A 197 ASP A 201 1 N ILE A 200 O VAL A 231 SHEET 4 A 4 VAL A 163 THR A 167 1 N MET A 164 O LEU A 199 LINK OG1 THR A 144 MG MG A 500 1555 1555 2.43 LINK MG MG A 500 O3B ADP A 501 1555 1555 2.48 CISPEP 1 ASN A 131 PRO A 132 0 0.11 SITE 1 AC1 4 THR A 144 ASP A 201 ASP A 202 ADP A 501 SITE 1 AC2 16 TYR A 102 ASN A 106 PHE A 107 VAL A 108 SITE 2 AC2 16 ASN A 113 GLY A 138 VAL A 139 GLY A 140 SITE 3 AC2 16 LEU A 141 GLY A 142 LYS A 143 THR A 144 SITE 4 AC2 16 HIS A 145 ILE A 271 LEU A 299 MG A 500 CRYST1 221.817 221.817 55.602 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004508 0.002603 0.000000 0.00000 SCALE2 0.000000 0.005206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017985 0.00000