PDB Short entry for 2Z5D HEADER LIGASE 06-JUL-07 2Z5D TITLE HUMAN UBIQUITIN-CONJUGATING ENZYME E2 H COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 H; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-179; COMPND 5 SYNONYM: UBIQUITIN-PROTEIN LIGASE H, UBIQUITIN CARRIER PROTEIN H, COMPND 6 UBCH2, E2-20K; COMPND 7 EC: 6.3.2.19; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2H; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC KEYWDS UBIQUITIN, UBIQUITIN-CONJUGATING ENZYME, UBE2H, SGC, LIGASE, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM EXPDTA X-RAY DIFFRACTION AUTHOR A.BOCHKAREV,H.CUI,J.R.WALKER,E.M.NEWMAN,F.MACKENZIE,K.P.BATTAILE, AUTHOR 2 M.SUNDSTROM,C.ARROWSMITH,A.EDWARDS,S.DHE-PAGANON,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 5 13-MAR-24 2Z5D 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 2Z5D 1 REMARK REVDAT 3 05-DEC-12 2Z5D 1 JRNL VERSN REVDAT 2 24-FEB-09 2Z5D 1 VERSN REVDAT 1 09-OCT-07 2Z5D 0 SPRSDE 09-OCT-07 2Z5D 1YH6 JRNL AUTH Y.SHENG,J.H.HONG,R.DOHERTY,T.SRIKUMAR,J.SHLOUSH, JRNL AUTH 2 G.V.AVVAKUMOV,J.R.WALKER,S.XUE,D.NECULAI,J.W.WAN,S.K.KIM, JRNL AUTH 3 C.H.ARROWSMITH,B.RAUGHT,S.DHE-PAGANON JRNL TITL A HUMAN UBIQUITIN CONJUGATING ENZYME (E2)-HECT E3 LIGASE JRNL TITL 2 STRUCTURE-FUNCTION SCREEN. JRNL REF MOL.CELL PROTEOMICS V. 11 329 2012 JRNL REFN ISSN 1535-9476 JRNL PMID 22496338 JRNL DOI 10.1074/MCP.O111.013706 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 21485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1162 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1531 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.513 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2513 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3412 ; 1.483 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 6.422 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;33.858 ;24.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;15.703 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.442 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1914 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1156 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1701 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 159 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.181 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.207 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1518 ; 0.888 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2471 ; 1.740 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1033 ; 3.035 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 941 ; 4.998 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : SI(111) DOUBLE CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 65.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.26900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2N NACL, 0.1M BIS REMARK 280 -TRIS, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.47950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.27900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.93050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.27900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.47950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.93050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1035 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 MET A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLU A 175 REMARK 465 GLN A 176 REMARK 465 GLU A 177 REMARK 465 GLU A 178 REMARK 465 GLY A 179 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 MET B 20 REMARK 465 SER B 21 REMARK 465 SER B 22 REMARK 465 PRO B 23 REMARK 465 SER B 24 REMARK 465 GLN B 176 REMARK 465 GLU B 177 REMARK 465 GLU B 178 REMARK 465 GLY B 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 212 O HOH B 181 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 148 CG - SD - CE ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 47 -109.15 -95.28 REMARK 500 SER A 126 -57.45 -127.43 REMARK 500 LEU B 47 -115.61 -97.40 REMARK 500 SER B 126 -62.65 -121.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 180 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 38 O REMARK 620 2 SER B 40 O 95.0 REMARK 620 3 HIS B 42 O 142.1 96.1 REMARK 620 4 HOH B 214 O 88.6 170.2 86.5 REMARK 620 5 HOH B 216 O 101.7 86.3 115.1 84.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 180 REMARK 999 REMARK 999 SEQUENCE REMARK 999 VAL16 IS MUTATED TO ILE16 AS RESULT OF AN UNINTENTIONAL REMARK 999 PCR-GENERATED MUTATION DBREF 2Z5D A 20 179 UNP P62256 UBE2H_HUMAN 1 160 DBREF 2Z5D B 20 179 UNP P62256 UBE2H_HUMAN 1 160 SEQADV 2Z5D MET A 1 UNP P62256 EXPRESSION TAG SEQADV 2Z5D GLY A 2 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER A 3 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER A 4 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS A 5 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS A 6 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS A 7 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS A 8 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS A 9 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS A 10 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER A 11 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER A 12 UNP P62256 EXPRESSION TAG SEQADV 2Z5D GLY A 13 UNP P62256 EXPRESSION TAG SEQADV 2Z5D LEU A 14 UNP P62256 EXPRESSION TAG SEQADV 2Z5D VAL A 15 UNP P62256 EXPRESSION TAG SEQADV 2Z5D PRO A 16 UNP P62256 EXPRESSION TAG SEQADV 2Z5D ARG A 17 UNP P62256 EXPRESSION TAG SEQADV 2Z5D GLY A 18 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER A 19 UNP P62256 EXPRESSION TAG SEQADV 2Z5D ILE A 35 UNP P62256 VAL 16 SEE REMARK 999 SEQADV 2Z5D MET B 1 UNP P62256 EXPRESSION TAG SEQADV 2Z5D GLY B 2 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER B 3 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER B 4 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS B 5 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS B 6 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS B 7 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS B 8 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS B 9 UNP P62256 EXPRESSION TAG SEQADV 2Z5D HIS B 10 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER B 11 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER B 12 UNP P62256 EXPRESSION TAG SEQADV 2Z5D GLY B 13 UNP P62256 EXPRESSION TAG SEQADV 2Z5D LEU B 14 UNP P62256 EXPRESSION TAG SEQADV 2Z5D VAL B 15 UNP P62256 EXPRESSION TAG SEQADV 2Z5D PRO B 16 UNP P62256 EXPRESSION TAG SEQADV 2Z5D ARG B 17 UNP P62256 EXPRESSION TAG SEQADV 2Z5D GLY B 18 UNP P62256 EXPRESSION TAG SEQADV 2Z5D SER B 19 UNP P62256 EXPRESSION TAG SEQADV 2Z5D ILE B 35 UNP P62256 VAL 16 SEE REMARK 999 SEQRES 1 A 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 179 LEU VAL PRO ARG GLY SER MET SER SER PRO SER PRO GLY SEQRES 3 A 179 LYS ARG ARG MET ASP THR ASP VAL ILE LYS LEU ILE GLU SEQRES 4 A 179 SER LYS HIS GLU VAL THR ILE LEU GLY GLY LEU ASN GLU SEQRES 5 A 179 PHE VAL VAL LYS PHE TYR GLY PRO GLN GLY THR PRO TYR SEQRES 6 A 179 GLU GLY GLY VAL TRP LYS VAL ARG VAL ASP LEU PRO ASP SEQRES 7 A 179 LYS TYR PRO PHE LYS SER PRO SER ILE GLY PHE MET ASN SEQRES 8 A 179 LYS ILE PHE HIS PRO ASN ILE ASP GLU ALA SER GLY THR SEQRES 9 A 179 VAL CYS LEU ASP VAL ILE ASN GLN THR TRP THR ALA LEU SEQRES 10 A 179 TYR ASP LEU THR ASN ILE PHE GLU SER PHE LEU PRO GLN SEQRES 11 A 179 LEU LEU ALA TYR PRO ASN PRO ILE ASP PRO LEU ASN GLY SEQRES 12 A 179 ASP ALA ALA ALA MET TYR LEU HIS ARG PRO GLU GLU TYR SEQRES 13 A 179 LYS GLN LYS ILE LYS GLU TYR ILE GLN LYS TYR ALA THR SEQRES 14 A 179 GLU GLU ALA LEU LYS GLU GLN GLU GLU GLY SEQRES 1 B 179 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 179 LEU VAL PRO ARG GLY SER MET SER SER PRO SER PRO GLY SEQRES 3 B 179 LYS ARG ARG MET ASP THR ASP VAL ILE LYS LEU ILE GLU SEQRES 4 B 179 SER LYS HIS GLU VAL THR ILE LEU GLY GLY LEU ASN GLU SEQRES 5 B 179 PHE VAL VAL LYS PHE TYR GLY PRO GLN GLY THR PRO TYR SEQRES 6 B 179 GLU GLY GLY VAL TRP LYS VAL ARG VAL ASP LEU PRO ASP SEQRES 7 B 179 LYS TYR PRO PHE LYS SER PRO SER ILE GLY PHE MET ASN SEQRES 8 B 179 LYS ILE PHE HIS PRO ASN ILE ASP GLU ALA SER GLY THR SEQRES 9 B 179 VAL CYS LEU ASP VAL ILE ASN GLN THR TRP THR ALA LEU SEQRES 10 B 179 TYR ASP LEU THR ASN ILE PHE GLU SER PHE LEU PRO GLN SEQRES 11 B 179 LEU LEU ALA TYR PRO ASN PRO ILE ASP PRO LEU ASN GLY SEQRES 12 B 179 ASP ALA ALA ALA MET TYR LEU HIS ARG PRO GLU GLU TYR SEQRES 13 B 179 LYS GLN LYS ILE LYS GLU TYR ILE GLN LYS TYR ALA THR SEQRES 14 B 179 GLU GLU ALA LEU LYS GLU GLN GLU GLU GLY HET NA B 180 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *190(H2 O) HELIX 1 1 SER A 24 SER A 40 1 17 HELIX 2 2 CYS A 106 TRP A 114 1 9 HELIX 3 3 THR A 121 SER A 126 1 6 HELIX 4 4 SER A 126 TYR A 134 1 9 HELIX 5 5 ASN A 142 ARG A 152 1 11 HELIX 6 6 ARG A 152 ALA A 168 1 17 HELIX 7 7 THR A 169 LYS A 174 1 6 HELIX 8 8 PRO B 25 SER B 40 1 16 HELIX 9 9 CYS B 106 TRP B 114 1 9 HELIX 10 10 ASP B 119 SER B 126 1 8 HELIX 11 11 SER B 126 TYR B 134 1 9 HELIX 12 12 ASN B 142 ARG B 152 1 11 HELIX 13 13 ARG B 152 ALA B 168 1 17 HELIX 14 14 THR B 169 GLU B 175 1 7 SHEET 1 A 4 VAL A 44 GLY A 49 0 SHEET 2 A 4 GLU A 52 TYR A 58 -1 O VAL A 54 N THR A 45 SHEET 3 A 4 VAL A 69 ASP A 75 -1 O VAL A 74 N PHE A 53 SHEET 4 A 4 SER A 86 PHE A 89 -1 O GLY A 88 N ARG A 73 SHEET 1 B 4 VAL B 44 GLY B 49 0 SHEET 2 B 4 GLU B 52 TYR B 58 -1 O GLU B 52 N LEU B 47 SHEET 3 B 4 VAL B 69 ASP B 75 -1 O VAL B 74 N PHE B 53 SHEET 4 B 4 SER B 86 PHE B 89 -1 O GLY B 88 N ARG B 73 LINK O ILE B 38 NA NA B 180 1555 1555 2.16 LINK O SER B 40 NA NA B 180 1555 1555 2.42 LINK O HIS B 42 NA NA B 180 1555 1555 2.35 LINK NA NA B 180 O HOH B 214 1555 1555 2.52 LINK NA NA B 180 O HOH B 216 1555 1555 2.43 CISPEP 1 TYR A 80 PRO A 81 0 -3.18 CISPEP 2 TYR B 80 PRO B 81 0 -2.26 SITE 1 AC1 6 LEU B 37 ILE B 38 SER B 40 HIS B 42 SITE 2 AC1 6 HOH B 214 HOH B 216 CRYST1 42.959 85.861 102.558 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009751 0.00000