PDB Short entry for 2ZIW HEADER HYDROLASE 25-FEB-08 2ZIW TITLE CRYSTAL STRUCTURE OF THE MUS81-EME1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUS81 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEASE DOMAIN AND C-TERMINAL DOMAIN, UNP COMPND 5 RESIDUES 303-612; COMPND 6 SYNONYM: DNA STRUCTURE SPECIFIC ENDONUCLEASE MUS81; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CROSSOVER JUNCTION ENDONUCLEASE EME1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: NUCLEASE-LIKE DOMAIN AND C-TERMINAL DOMAIN, UNP COMPND 12 RESIDUES 246-570; COMPND 13 SYNONYM: HMMS4, DNA REPAIR PROTEIN EME1; COMPND 14 EC: 3.1.22.-; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: MUS81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF DUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: EME1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET DUET KEYWDS HELIX-HAIRPIN-HELIX, ALTERNATIVE SPLICING, DNA DAMAGE, DNA KEYWDS 2 RECOMBINATION, DNA REPAIR, ENDONUCLEASE, HYDROLASE, KEYWDS 3 MAGNESIUM, METAL-BINDING, NUCLEASE, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 4 POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR J.H.CHANG,J.J.KIM,J.M.CHOI,J.H.LEE,Y.CHO REVDAT 2 24-FEB-09 2ZIW 1 VERSN REVDAT 1 29-APR-08 2ZIW 0 JRNL AUTH J.H.CHANG,J.J.KIM,J.M.CHOI,J.H.LEE,Y.CHO JRNL TITL CRYSTAL STRUCTURE OF THE MUS81-EME1 COMPLEX JRNL REF GENES DEV. V. 22 1093 2008 JRNL REFN ISSN 0890-9369 JRNL PMID 18413719 JRNL DOI 10.1101/GAD.1618708 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 123437.290 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 21599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5164 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 302 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3869 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.44000 REMARK 3 B22 (A**2) : 2.44000 REMARK 3 B33 (A**2) : -4.88000 REMARK 3 B12 (A**2) : 7.84000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.88 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.180 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.650 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.560 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 21.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZIW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-08. REMARK 100 THE RCSB ID CODE IS RCSB028028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21868 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.12000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 52.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.27500 REMARK 200 R SYM FOR SHELL (I) : 0.26700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-ACETATE, 2.3M AMMONIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, HANGING DROP, PH 5.0, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.44200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.88400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 112.88400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.44200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 302 REMARK 465 SER A 303 REMARK 465 GLU A 304 REMARK 465 THR A 305 REMARK 465 GLY A 306 REMARK 465 ARG A 307 REMARK 465 THR A 308 REMARK 465 ALA A 309 REMARK 465 MSE A 310 REMARK 465 GLY A 311 REMARK 465 THR A 331 REMARK 465 GLY A 332 REMARK 465 GLY A 333 REMARK 465 SER A 334 REMARK 465 SER A 335 REMARK 465 VAL A 336 REMARK 465 ARG A 337 REMARK 465 LYS A 338 REMARK 465 SER A 432 REMARK 465 ALA A 433 REMARK 465 ALA A 434 REMARK 465 ALA A 435 REMARK 465 HIS A 436 REMARK 465 ARG A 491 REMARK 465 SER A 492 REMARK 465 ARG A 493 REMARK 465 GLU A 494 REMARK 465 LEU A 495 REMARK 465 GLU A 496 REMARK 465 GLY A 497 REMARK 465 ASP A 498 REMARK 465 GLY A 499 REMARK 465 GLU A 500 REMARK 465 ALA A 501 REMARK 465 GLU A 502 REMARK 465 SER A 503 REMARK 465 GLU A 504 REMARK 465 LYS A 505 REMARK 465 MSE A 506 REMARK 465 VAL A 507 REMARK 465 MSE B 230 REMARK 465 GLY B 231 REMARK 465 SER B 232 REMARK 465 SER B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 SER B 240 REMARK 465 GLN B 241 REMARK 465 ASP B 242 REMARK 465 PRO B 243 REMARK 465 ASN B 244 REMARK 465 SER B 245 REMARK 465 GLU B 246 REMARK 465 GLU B 247 REMARK 465 CYS B 248 REMARK 465 LEU B 249 REMARK 465 ARG B 295 REMARK 465 ARG B 296 REMARK 465 ALA B 297 REMARK 465 GLY B 298 REMARK 465 PRO B 299 REMARK 465 SER B 300 REMARK 465 GLU B 301 REMARK 465 ASP B 302 REMARK 465 ARG B 303 REMARK 465 GLU B 304 REMARK 465 ASP B 305 REMARK 465 TRP B 306 REMARK 465 ALA B 320 REMARK 465 PHE B 321 REMARK 465 VAL B 322 REMARK 465 SER B 323 REMARK 465 MSE B 324 REMARK 465 ILE B 325 REMARK 465 ASP B 326 REMARK 465 ASN B 327 REMARK 465 GLY B 328 REMARK 465 LYS B 329 REMARK 465 GLN B 330 REMARK 465 GLY B 331 REMARK 465 SER B 332 REMARK 465 LEU B 333 REMARK 465 ASP B 334 REMARK 465 SER B 335 REMARK 465 THR B 336 REMARK 465 MSE B 337 REMARK 465 LYS B 338 REMARK 465 GLY B 339 REMARK 465 LYS B 340 REMARK 465 GLU B 341 REMARK 465 THR B 342 REMARK 465 LEU B 343 REMARK 465 GLN B 344 REMARK 465 GLY B 345 REMARK 465 PHE B 346 REMARK 465 VAL B 347 REMARK 465 THR B 348 REMARK 465 ALA B 358 REMARK 465 LEU B 359 REMARK 465 CYS B 369 REMARK 465 PHE B 370 REMARK 465 SER B 371 REMARK 465 ALA B 372 REMARK 465 GLN B 373 REMARK 465 ASN B 374 REMARK 465 PRO B 375 REMARK 465 PRO B 376 REMARK 465 ARG B 377 REMARK 465 ARG B 378 REMARK 465 GLY B 379 REMARK 465 LYS B 380 REMARK 465 GLN B 381 REMARK 465 GLY B 382 REMARK 465 ALA B 383 REMARK 465 ASN B 384 REMARK 465 LYS B 385 REMARK 465 GLN B 386 REMARK 465 THR B 387 REMARK 465 LYS B 388 REMARK 465 LYS B 389 REMARK 465 GLN B 390 REMARK 465 GLN B 391 REMARK 465 GLN B 392 REMARK 465 ARG B 393 REMARK 465 GLN B 394 REMARK 465 PRO B 395 REMARK 465 GLU B 396 REMARK 465 ALA B 397 REMARK 465 SER B 398 REMARK 465 ILE B 399 REMARK 465 GLY B 400 REMARK 465 SER B 401 REMARK 465 MSE B 402 REMARK 465 VAL B 403 REMARK 465 PHE B 448 REMARK 465 LYS B 449 REMARK 465 LYS B 450 REMARK 465 GLY B 535 REMARK 465 GLU B 536 REMARK 465 GLY B 537 REMARK 465 VAL B 538 REMARK 465 THR B 539 REMARK 465 SER B 540 REMARK 465 THR B 541 REMARK 465 SER B 542 REMARK 465 ARG B 543 REMARK 465 SER B 568 REMARK 465 ALA B 569 REMARK 465 ASP B 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 349 CG OD1 OD2 REMARK 470 ILE B 350 CG1 CG2 CD1 REMARK 470 THR B 351 OG1 CG2 REMARK 470 LYS B 353 CG CD CE NZ REMARK 470 THR B 354 OG1 CG2 REMARK 470 LYS B 357 CG CD CE NZ REMARK 470 SER B 360 OG REMARK 470 LEU B 361 CG CD1 CD2 REMARK 470 VAL B 362 CG1 CG2 REMARK 470 ILE B 363 CG1 CG2 CD1 REMARK 470 VAL B 364 CG1 CG2 REMARK 470 ASP B 365 CG OD1 OD2 REMARK 470 GLN B 366 CG CD OE1 NE2 REMARK 470 GLU B 367 CG CD OE1 OE2 REMARK 470 LYS B 368 CG CD CE NZ REMARK 470 SER B 404 OG REMARK 470 ARG B 405 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 406 CG1 CG2 REMARK 470 GLU B 409 CG CD OE1 OE2 REMARK 470 ASP B 414 CG OD1 OD2 REMARK 470 LEU B 415 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 309 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 314 84.87 61.62 REMARK 500 PRO A 316 171.23 -33.32 REMARK 500 ASP A 326 -156.77 -87.92 REMARK 500 LEU A 327 46.05 -75.58 REMARK 500 LEU A 341 -48.26 -14.09 REMARK 500 SER A 349 71.67 59.36 REMARK 500 ARG A 355 -163.28 -107.83 REMARK 500 PHE A 362 117.34 75.78 REMARK 500 ALA A 366 78.01 -107.17 REMARK 500 ASP A 388 -16.03 -45.51 REMARK 500 GLU A 429 -88.11 70.54 REMARK 500 CYS A 430 159.48 87.20 REMARK 500 ILE A 439 111.83 52.68 REMARK 500 LEU A 482 5.16 113.08 REMARK 500 TYR A 483 -25.20 -140.84 REMARK 500 GLN A 484 -43.76 -21.52 REMARK 500 THR A 487 -81.19 -37.44 REMARK 500 LEU A 488 -179.57 113.02 REMARK 500 PHE A 489 -165.50 -169.16 REMARK 500 SER A 513 78.54 -104.50 REMARK 500 SER A 573 163.57 102.09 REMARK 500 LYS A 579 -22.58 58.36 REMARK 500 LEU A 589 -152.76 61.63 REMARK 500 LYS A 590 48.10 -176.09 REMARK 500 ARG A 608 -56.26 82.27 REMARK 500 CYS B 278 170.22 67.13 REMARK 500 CYS B 280 85.50 53.10 REMARK 500 GLU B 308 -172.68 -45.56 REMARK 500 THR B 311 -126.71 -85.31 REMARK 500 VAL B 312 144.16 59.91 REMARK 500 LEU B 313 112.41 -167.87 REMARK 500 LEU B 361 67.49 94.11 REMARK 500 ARG B 405 16.21 -55.29 REMARK 500 GLU B 420 30.82 -94.08 REMARK 500 ALA B 423 58.92 -166.55 REMARK 500 GLN B 427 74.61 -159.43 REMARK 500 SER B 428 -15.36 -172.30 REMARK 500 TRP B 429 -44.63 75.71 REMARK 500 ARG B 452 -84.28 -82.22 REMARK 500 PRO B 505 13.83 -62.51 REMARK 500 ARG B 533 -125.05 109.96 REMARK 500 ILE B 545 -61.43 94.07 REMARK 500 THR B 559 141.24 -174.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZIU RELATED DB: PDB REMARK 900 RELATED ID: 2ZIV RELATED DB: PDB REMARK 900 RELATED ID: 2ZIX RELATED DB: PDB DBREF 2ZIW A 303 612 UNP Q6GML8 Q6GML8_DANRE 303 612 DBREF 2ZIW B 246 570 UNP Q96AY2 EME1_HUMAN 246 570 SEQADV 2ZIW MSE A 302 UNP Q6GML8 INITIATING METHIONINE SEQADV 2ZIW MSE B 230 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW GLY B 231 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW SER B 232 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW SER B 233 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW HIS B 234 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW HIS B 235 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW HIS B 236 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW HIS B 237 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW HIS B 238 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW HIS B 239 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW SER B 240 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW GLN B 241 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW ASP B 242 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW PRO B 243 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW ASN B 244 UNP Q96AY2 EXPRESSION TAG SEQADV 2ZIW SER B 245 UNP Q96AY2 EXPRESSION TAG SEQRES 1 A 311 MSE SER GLU THR GLY ARG THR ALA MSE GLY TRP HIS LEU SEQRES 2 A 311 SER PRO GLY SER TYR ASP ILE VAL LEU CYS VAL ASP LEU SEQRES 3 A 311 CYS GLU THR THR GLY GLY SER SER VAL ARG LYS GLN GLU SEQRES 4 A 311 LEU VAL LYS GLU LEU GLN ARG ASN SER VAL THR PHE ASP SEQRES 5 A 311 VAL ARG LYS LEU ASN VAL GLY ASP PHE LEU TRP VAL ALA SEQRES 6 A 311 ARG GLU ARG VAL THR PRO VAL PRO GLY GLN LEU ARG PRO SEQRES 7 A 311 PRO VAL GLY LYS GLU LEU VAL LEU ASP TYR ILE ILE GLU SEQRES 8 A 311 ARG LYS ARG MSE ASP ASP LEU CYS GLY SER ILE ILE ASP SEQRES 9 A 311 GLY ARG PHE ARG GLU GLN LYS PHE ARG LEU LYS ARG CYS SEQRES 10 A 311 GLY LEU ARG LYS PRO ILE TYR LEU VAL GLU GLU CYS GLY SEQRES 11 A 311 SER ALA ALA ALA HIS LEU SER ILE PRO GLU SER THR LEU SEQRES 12 A 311 GLN GLN ALA ILE VAL ASN THR GLN VAL VAL ASP GLY PHE SEQRES 13 A 311 PHE VAL LYS ARG VAL GLN ASP ALA LYS GLU SER ALA ALA SEQRES 14 A 311 TYR LEU THR ILE MSE THR ARG TYR LEU GLN LYS LEU TYR SEQRES 15 A 311 GLN ASN CYS THR LEU PHE CYS ARG SER ARG GLU LEU GLU SEQRES 16 A 311 GLY ASP GLY GLU ALA GLU SER GLU LYS MSE VAL ALA ASN SEQRES 17 A 311 LEU SER CYS SER LEU MSE ALA PHE THR GLU PHE ASN TYR SEQRES 18 A 311 GLY ALA ILE LYS ASN LYS CYS GLN THR VAL ARG GLU VAL SEQRES 19 A 311 PHE ALA ARG GLN LEU MSE GLN ILE SER GLY VAL SER GLY SEQRES 20 A 311 ASP LYS ALA ALA ALA VAL LEU GLU HIS TYR SER THR VAL SEQRES 21 A 311 SER SER LEU LEU GLN ALA TYR ASP LYS CYS SER SER GLU SEQRES 22 A 311 THR GLU LYS GLU LYS LEU LEU SER SER VAL LYS TYR GLY SEQRES 23 A 311 LYS LEU LYS ARG ASN LEU GLY PRO ALA LEU SER ARG THR SEQRES 24 A 311 ILE TYR GLN LEU TYR CYS THR ARG GLY PRO LEU SER SEQRES 1 B 341 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 341 PRO ASN SER GLU GLU CYS LEU LYS HIS ILE ILE VAL VAL SEQRES 3 B 341 LEU ASP PRO VAL LEU LEU GLN MSE GLU GLY GLY GLY GLN SEQRES 4 B 341 LEU LEU GLY ALA LEU GLN THR MSE GLU CYS ARG CYS VAL SEQRES 5 B 341 ILE GLU ALA GLN ALA VAL PRO CYS SER VAL THR TRP ARG SEQRES 6 B 341 ARG ARG ALA GLY PRO SER GLU ASP ARG GLU ASP TRP VAL SEQRES 7 B 341 GLU GLU PRO THR VAL LEU VAL LEU LEU ARG ALA GLU ALA SEQRES 8 B 341 PHE VAL SER MSE ILE ASP ASN GLY LYS GLN GLY SER LEU SEQRES 9 B 341 ASP SER THR MSE LYS GLY LYS GLU THR LEU GLN GLY PHE SEQRES 10 B 341 VAL THR ASP ILE THR ALA LYS THR ALA GLY LYS ALA LEU SEQRES 11 B 341 SER LEU VAL ILE VAL ASP GLN GLU LYS CYS PHE SER ALA SEQRES 12 B 341 GLN ASN PRO PRO ARG ARG GLY LYS GLN GLY ALA ASN LYS SEQRES 13 B 341 GLN THR LYS LYS GLN GLN GLN ARG GLN PRO GLU ALA SER SEQRES 14 B 341 ILE GLY SER MSE VAL SER ARG VAL ASP ALA GLU GLU ALA SEQRES 15 B 341 LEU VAL ASP LEU GLN LEU HIS THR GLU ALA GLN ALA GLN SEQRES 16 B 341 ILE VAL GLN SER TRP LYS GLU LEU ALA ASP PHE THR CYS SEQRES 17 B 341 ALA PHE THR LYS ALA VAL ALA GLU ALA PRO PHE LYS LYS SEQRES 18 B 341 LEU ARG ASP GLU THR THR PHE SER PHE CYS LEU GLU SER SEQRES 19 B 341 ASP TRP ALA GLY GLY VAL LYS VAL ASP LEU ALA GLY ARG SEQRES 20 B 341 GLY LEU ALA LEU VAL TRP ARG ARG GLN ILE GLN GLN LEU SEQRES 21 B 341 ASN ARG VAL SER LEU GLU MSE ALA SER ALA VAL VAL ASN SEQRES 22 B 341 ALA TYR PRO SER PRO GLN LEU LEU VAL GLN ALA TYR GLN SEQRES 23 B 341 GLN CYS PHE SER ASP LYS GLU ARG GLN ASN LEU LEU ALA SEQRES 24 B 341 ASP ILE GLN VAL ARG ARG GLY GLU GLY VAL THR SER THR SEQRES 25 B 341 SER ARG ARG ILE GLY PRO GLU LEU SER ARG ARG ILE TYR SEQRES 26 B 341 LEU GLN MSE THR THR LEU GLN PRO HIS LEU SER LEU ASP SEQRES 27 B 341 SER ALA ASP MODRES 2ZIW MSE A 396 MET SELENOMETHIONINE MODRES 2ZIW MSE A 475 MET SELENOMETHIONINE MODRES 2ZIW MSE A 515 MET SELENOMETHIONINE MODRES 2ZIW MSE A 541 MET SELENOMETHIONINE MODRES 2ZIW MSE B 263 MET SELENOMETHIONINE MODRES 2ZIW MSE B 276 MET SELENOMETHIONINE MODRES 2ZIW MSE B 496 MET SELENOMETHIONINE MODRES 2ZIW MSE B 557 MET SELENOMETHIONINE HET MSE A 396 8 HET MSE A 475 8 HET MSE A 515 8 HET MSE A 541 8 HET MSE B 263 8 HET MSE B 276 8 HET MSE B 496 8 HET MSE B 557 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) HELIX 1 1 GLN A 339 ARG A 347 1 9 HELIX 2 2 MSE A 396 ASP A 405 1 10 HELIX 3 3 ARG A 407 LYS A 416 1 10 HELIX 4 4 PRO A 440 VAL A 454 1 15 HELIX 5 5 ASP A 464 LYS A 481 1 18 HELIX 6 6 PHE A 517 CYS A 529 1 13 HELIX 7 7 THR A 531 MSE A 541 1 11 HELIX 8 8 SER A 547 TYR A 558 1 12 HELIX 9 9 THR A 560 LYS A 570 1 11 HELIX 10 10 SER A 573 GLU A 578 1 6 HELIX 11 11 LEU A 593 CYS A 606 1 14 HELIX 12 12 ASP B 257 GLN B 262 1 6 HELIX 13 13 GLY B 265 MSE B 276 1 12 HELIX 14 14 ASP B 349 GLY B 356 1 8 HELIX 15 15 ARG B 405 LEU B 417 1 13 HELIX 16 16 TRP B 429 ALA B 444 1 16 HELIX 17 17 THR B 455 LEU B 461 1 7 HELIX 18 18 GLY B 477 GLN B 487 1 11 HELIX 19 19 SER B 493 TYR B 504 1 12 HELIX 20 20 SER B 506 GLN B 515 1 10 HELIX 21 21 SER B 519 GLN B 524 1 6 HELIX 22 22 PRO B 547 THR B 558 1 12 SHEET 1 A 6 PHE A 352 VAL A 354 0 SHEET 2 A 6 ASP A 320 VAL A 325 1 N LEU A 323 O ASP A 353 SHEET 3 A 6 LEU A 363 ARG A 367 -1 O VAL A 365 N VAL A 322 SHEET 4 A 6 GLU A 384 ARG A 395 -1 O LEU A 385 N ALA A 366 SHEET 5 A 6 LYS A 422 GLU A 428 1 O LEU A 426 N GLU A 392 SHEET 6 A 6 PHE A 458 ARG A 461 1 O PHE A 458 N TYR A 425 SHEET 1 B 5 PHE A 352 VAL A 354 0 SHEET 2 B 5 ASP A 320 VAL A 325 1 N LEU A 323 O ASP A 353 SHEET 3 B 5 LEU A 363 ARG A 367 -1 O VAL A 365 N VAL A 322 SHEET 4 B 5 GLU A 384 ARG A 395 -1 O LEU A 385 N ALA A 366 SHEET 5 B 5 MSE A 515 ALA A 516 -1 O MSE A 515 N VAL A 386 SHEET 1 C 3 SER B 290 VAL B 291 0 SHEET 2 C 3 LEU B 313 LEU B 315 -1 O VAL B 314 N VAL B 291 SHEET 3 C 3 VAL B 362 VAL B 364 1 O ILE B 363 N LEU B 313 SHEET 1 D 2 GLN B 366 GLU B 367 0 SHEET 2 D 2 ILE B 425 VAL B 426 1 O VAL B 426 N GLN B 366 LINK C ARG A 395 N MSE A 396 1555 1555 1.32 LINK C MSE A 396 N ASP A 397 1555 1555 1.33 LINK C ILE A 474 N MSE A 475 1555 1555 1.33 LINK C MSE A 475 N THR A 476 1555 1555 1.34 LINK C LEU A 514 N MSE A 515 1555 1555 1.34 LINK C MSE A 515 N ALA A 516 1555 1555 1.33 LINK C LEU A 540 N MSE A 541 1555 1555 1.33 LINK C MSE A 541 N GLN A 542 1555 1555 1.33 LINK C GLN B 262 N MSE B 263 1555 1555 1.33 LINK C MSE B 263 N GLU B 264 1555 1555 1.33 LINK C THR B 275 N MSE B 276 1555 1555 1.33 LINK C MSE B 276 N GLU B 277 1555 1555 1.33 LINK C GLU B 495 N MSE B 496 1555 1555 1.33 LINK C MSE B 496 N ALA B 497 1555 1555 1.33 LINK C GLN B 556 N MSE B 557 1555 1555 1.32 LINK C MSE B 557 N THR B 558 1555 1555 1.33 CISPEP 1 ALA B 446 PRO B 447 0 -0.08 CRYST1 88.963 88.963 169.326 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011241 0.006490 0.000000 0.00000 SCALE2 0.000000 0.012980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005906 0.00000