PDB Short entry for 2ZJ4 HEADER TRANSFERASE 29-FEB-08 2ZJ4 TITLE ISOMERASE DOMAIN OF HUMAN GLUCOSE:FRUCTOSE-6-PHOSPHATE TITLE 2 AMIDOTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE COMPND 3 [ISOMERIZING] 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SIS(SUGAR ISOMERASE) DOMAINS, UNP RESIDUES 332-699; COMPND 6 SYNONYM: GLUTAMINE:FRUCTOSE 6 PHOSPHATE AMIDOTRANSFERASE 1, COMPND 7 HEXOSEPHOSPHATE AMINOTRANSFERASE 1, D-FRUCTOSE-6-PHOSPHATE COMPND 8 AMIDOTRANSFERASE 1, GFAT 1, GFAT1; COMPND 9 EC: 2.6.1.16; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23 KEYWDS GLUCOSAMINE-6-PHOSPHATE SYNTHASE, ALDOSE/KETOSE ISOMERASE, ROSSMANN- KEYWDS 2 LIKE FOLD, TRANSFERASE, ALTERNATIVE SPLICING, AMINOTRANSFERASE, KEYWDS 3 GLUTAMINE AMIDOTRANSFERASE, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKAISHI,M.BANDO,K.KONDO,H.TSUGE REVDAT 2 01-NOV-23 2ZJ4 1 REMARK SEQADV REVDAT 1 13-JAN-09 2ZJ4 0 JRNL AUTH Y.NAKAISHI,M.BANDO,H.SHIMIZU,K.WATANABE,F.GOTO,H.TSUGE, JRNL AUTH 2 K.KONDO,M.KOMATSU JRNL TITL STRUCTURAL ANALYSIS OF HUMAN GLUTAMINE:FRUCTOSE-6-PHOSPHATE JRNL TITL 2 AMIDOTRANSFERASE, A KEY REGULATOR IN TYPE 2 DIABETES JRNL REF FEBS LETT. V. 583 163 2009 JRNL REFN ISSN 0014-5793 JRNL PMID 19059404 JRNL DOI 10.1016/J.FEBSLET.2008.11.041 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 21357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1144 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.1460 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2920 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2003 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3937 ; 1.778 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4906 ; 1.454 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 6.404 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;32.790 ;23.871 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;15.697 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.724 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3173 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 562 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 584 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1997 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1380 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1404 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.289 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2368 ; 1.437 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 742 ; 0.238 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2940 ; 1.612 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1246 ; 3.106 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 997 ; 4.334 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000028036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22501 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ZJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% ISOPORPANOL, 0.04M TRIS, 0.08M REMARK 280 AMMONIUM ACETATE, 12% GLYCEROL 10-FOLD EXCESS OF 2-DEOXY-2- REMARK 280 AMINOGLUCITOL-6-PHOSPHATE, PH 8.50, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.46350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.46350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.66150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.46350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.33075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.46350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 207.99225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.46350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 207.99225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.46350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.33075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 39.46350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 39.46350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 138.66150 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 39.46350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 39.46350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 138.66150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 39.46350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 207.99225 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 39.46350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 69.33075 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 39.46350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 69.33075 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 39.46350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 207.99225 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 39.46350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 39.46350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 138.66150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 78.92700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 78.92700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 883 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 887 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 929 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 GLN A 313 REMARK 465 GLN A 314 REMARK 465 ILE A 315 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 722 O HOH A 844 2.08 REMARK 500 O HOH A 877 O HOH A 922 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 396 CG MET A 396 SD 0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 502 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 502 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 594 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 663 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 319 -25.38 108.30 REMARK 500 ARG A 342 -50.53 -129.43 REMARK 500 SER A 420 117.54 -161.55 REMARK 500 THR A 474 -82.58 -132.69 REMARK 500 ASP A 595 -164.96 -127.48 REMARK 500 GLN A 612 4.82 80.74 REMARK 500 VAL A 679 -78.63 -112.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 547 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGP A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZJ3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ALPHA-D-GLUCOSE-6-PHOSPHATE DBREF 2ZJ4 A 313 680 UNP Q06210 GFPT1_HUMAN 332 699 SEQADV 2ZJ4 MET A 306 UNP Q06210 EXPRESSION TAG SEQADV 2ZJ4 HIS A 307 UNP Q06210 EXPRESSION TAG SEQADV 2ZJ4 HIS A 308 UNP Q06210 EXPRESSION TAG SEQADV 2ZJ4 HIS A 309 UNP Q06210 EXPRESSION TAG SEQADV 2ZJ4 HIS A 310 UNP Q06210 EXPRESSION TAG SEQADV 2ZJ4 HIS A 311 UNP Q06210 EXPRESSION TAG SEQADV 2ZJ4 HIS A 312 UNP Q06210 EXPRESSION TAG SEQRES 1 A 375 MET HIS HIS HIS HIS HIS HIS GLN GLN ILE MET LYS GLY SEQRES 2 A 375 ASN PHE SER SER PHE MET GLN LYS GLU ILE PHE GLU GLN SEQRES 3 A 375 PRO GLU SER VAL VAL ASN THR MET ARG GLY ARG VAL ASN SEQRES 4 A 375 PHE ASP ASP TYR THR VAL ASN LEU GLY GLY LEU LYS ASP SEQRES 5 A 375 HIS ILE LYS GLU ILE GLN ARG CYS ARG ARG LEU ILE LEU SEQRES 6 A 375 ILE ALA CYS GLY THR SER TYR HIS ALA GLY VAL ALA THR SEQRES 7 A 375 ARG GLN VAL LEU GLU GLU LEU THR GLU LEU PRO VAL MET SEQRES 8 A 375 VAL GLU LEU ALA SER ASP PHE LEU ASP ARG ASN THR PRO SEQRES 9 A 375 VAL PHE ARG ASP ASP VAL CYS PHE PHE LEU SER GLN SER SEQRES 10 A 375 GLY GLU THR ALA ASP THR LEU MET GLY LEU ARG TYR CYS SEQRES 11 A 375 LYS GLU ARG GLY ALA LEU THR VAL GLY ILE THR ASN THR SEQRES 12 A 375 VAL GLY SER SER ILE SER ARG GLU THR ASP CYS GLY VAL SEQRES 13 A 375 HIS ILE ASN ALA GLY PRO GLU ILE GLY VAL ALA SER THR SEQRES 14 A 375 LYS ALA TYR THR SER GLN PHE VAL SER LEU VAL MET PHE SEQRES 15 A 375 ALA LEU MET MET CYS ASP ASP ARG ILE SER MET GLN GLU SEQRES 16 A 375 ARG ARG LYS GLU ILE MET LEU GLY LEU LYS ARG LEU PRO SEQRES 17 A 375 ASP LEU ILE LYS GLU VAL LEU SER MET ASP ASP GLU ILE SEQRES 18 A 375 GLN LYS LEU ALA THR GLU LEU TYR HIS GLN LYS SER VAL SEQRES 19 A 375 LEU ILE MET GLY ARG GLY TYR HIS TYR ALA THR CYS LEU SEQRES 20 A 375 GLU GLY ALA LEU LYS ILE LYS GLU ILE THR TYR MET HIS SEQRES 21 A 375 SER GLU GLY ILE LEU ALA GLY GLU LEU LYS HIS GLY PRO SEQRES 22 A 375 LEU ALA LEU VAL ASP LYS LEU MET PRO VAL ILE MET ILE SEQRES 23 A 375 ILE MET ARG ASP HIS THR TYR ALA LYS CYS GLN ASN ALA SEQRES 24 A 375 LEU GLN GLN VAL VAL ALA ARG GLN GLY ARG PRO VAL VAL SEQRES 25 A 375 ILE CYS ASP LYS GLU ASP THR GLU THR ILE LYS ASN THR SEQRES 26 A 375 LYS ARG THR ILE LYS VAL PRO HIS SER VAL ASP CYS LEU SEQRES 27 A 375 GLN GLY ILE LEU SER VAL ILE PRO LEU GLN LEU LEU ALA SEQRES 28 A 375 PHE HIS LEU ALA VAL LEU ARG GLY TYR ASP VAL ASP PHE SEQRES 29 A 375 PRO ARG ASN LEU ALA LYS SER VAL THR VAL GLU HET AGP A 1 16 HETNAM AGP 2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE FORMUL 2 AGP C6 H16 N O8 P FORMUL 3 HOH *267(H2 O) HELIX 1 1 SER A 322 GLU A 330 1 9 HELIX 2 2 GLU A 330 ARG A 340 1 11 HELIX 3 3 LEU A 352 LYS A 356 5 5 HELIX 4 4 HIS A 358 CYS A 365 1 8 HELIX 5 5 CYS A 373 GLU A 392 1 20 HELIX 6 6 ALA A 400 ARG A 406 1 7 HELIX 7 7 THR A 425 ARG A 438 1 14 HELIX 8 8 SER A 451 THR A 457 1 7 HELIX 9 9 THR A 474 CYS A 492 1 19 HELIX 10 10 ARG A 495 SER A 497 5 3 HELIX 11 11 MET A 498 SER A 521 1 24 HELIX 12 12 MET A 522 TYR A 534 1 13 HELIX 13 13 ARG A 544 TYR A 546 5 3 HELIX 14 14 HIS A 547 TYR A 563 1 17 HELIX 15 15 GLY A 572 VAL A 582 5 11 HELIX 16 16 THR A 597 ARG A 611 1 15 HELIX 17 17 ASP A 623 THR A 630 1 8 HELIX 18 18 LEU A 643 VAL A 649 1 7 HELIX 19 19 VAL A 649 GLY A 664 1 16 SHEET 1 A 2 VAL A 343 ASN A 344 0 SHEET 2 A 2 THR A 349 VAL A 350 -1 O THR A 349 N ASN A 344 SHEET 1 B 5 VAL A 395 LEU A 399 0 SHEET 2 B 5 ARG A 367 ALA A 372 1 N LEU A 370 O MET A 396 SHEET 3 B 5 ASP A 414 SER A 420 1 O PHE A 417 N ILE A 371 SHEET 4 B 5 LEU A 441 THR A 446 1 O ILE A 445 N PHE A 418 SHEET 5 B 5 CYS A 459 HIS A 462 1 O VAL A 461 N GLY A 444 SHEET 1 C 5 HIS A 565 LEU A 570 0 SHEET 2 C 5 SER A 538 GLY A 543 1 N ILE A 541 O ILE A 569 SHEET 3 C 5 VAL A 588 ILE A 591 1 O ILE A 589 N MET A 542 SHEET 4 C 5 VAL A 616 ASP A 620 1 O ILE A 618 N MET A 590 SHEET 5 C 5 THR A 633 VAL A 636 1 O VAL A 636 N CYS A 619 SITE 1 AC1 19 GLY A 374 THR A 375 SER A 376 SER A 420 SITE 2 AC1 19 GLN A 421 SER A 422 THR A 425 VAL A 471 SITE 3 AC1 19 ALA A 472 SER A 473 LYS A 557 GLU A 560 SITE 4 AC1 19 HIS A 576 HOH A 685 HOH A 692 HOH A 696 SITE 5 AC1 19 HOH A 700 HOH A 702 HOH A 728 CRYST1 78.927 78.927 277.323 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003606 0.00000