PDB Short entry for 2ZOT HEADER CELL ADHESION 07-JUN-08 2ZOT TITLE CRYSTAL STRUCTURE OF HUMAN F-SPONDIN REELER DOMAIN (FRAGMENT 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPONDIN-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: REELER DOMAIN; COMPND 5 SYNONYM: F-SPONDIN, VASCULAR SMOOTH MUSCLE CELL GROWTH-PROMOTING COMPND 6 FACTOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPON1, KIAA0762, VSGP; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T CELL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1/MYC-HIS(+) VECTOR KEYWDS BETA-SANDWICH, EXTRACELLULAR PROTEIN, CELL ADHESION, EXTRACELLULAR KEYWDS 2 MATRIX, GLYCOPROTEIN, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR M.NAGAE,T.NOGI,J.TAKAGI REVDAT 6 21-DEC-16 2ZOT 1 TITLE REVDAT 5 22-FEB-12 2ZOT 1 JRNL REVDAT 4 13-JUL-11 2ZOT 1 VERSN REVDAT 3 24-FEB-09 2ZOT 1 VERSN REVDAT 2 18-NOV-08 2ZOT 1 JRNL TITLE REVDAT 1 14-OCT-08 2ZOT 0 JRNL AUTH M.NAGAE,K.NISHIKAWA,N.YASUI,M.YAMASAKI,T.NOGI,J.TAKAGI JRNL TITL STRUCTURE OF THE F-SPONDIN REELER DOMAIN REVEALS A UNIQUE JRNL TITL 2 BETA-SANDWICH FOLD WITH A DEFORMABLE DISULFIDE-BONDED LOOP JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 1138 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 19020352 JRNL DOI 10.1107/S0907444908028308 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 15792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1198 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : 1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.457 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.398 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.470 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.835 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4511 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6099 ; 1.163 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 553 ; 6.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;34.507 ;22.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 754 ;18.305 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;15.637 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 667 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3440 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1853 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3068 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 132 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2860 ; 0.314 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4507 ; 0.561 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1842 ; 0.760 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1592 ; 1.282 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6532 -6.9966 0.9912 REMARK 3 T TENSOR REMARK 3 T11: -0.1965 T22: 0.0198 REMARK 3 T33: -0.1565 T12: -0.0984 REMARK 3 T13: -0.0093 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 4.4262 L22: 8.1597 REMARK 3 L33: 4.8413 L12: 2.5203 REMARK 3 L13: -2.4386 L23: -4.8940 REMARK 3 S TENSOR REMARK 3 S11: -0.4477 S12: 0.5951 S13: -0.2704 REMARK 3 S21: -0.6217 S22: 0.3760 S23: -0.1422 REMARK 3 S31: 0.5045 S32: -0.2575 S33: 0.0718 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 183 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0244 9.7281 -1.6898 REMARK 3 T TENSOR REMARK 3 T11: -0.2811 T22: 0.1271 REMARK 3 T33: -0.0797 T12: -0.1108 REMARK 3 T13: -0.0581 T23: 0.2765 REMARK 3 L TENSOR REMARK 3 L11: 6.9900 L22: 4.8482 REMARK 3 L33: 4.3058 L12: 3.3523 REMARK 3 L13: -2.0704 L23: -2.7658 REMARK 3 S TENSOR REMARK 3 S11: 0.4836 S12: -0.9167 S13: -0.5488 REMARK 3 S21: 0.3900 S22: -0.6716 S23: -0.5721 REMARK 3 S31: -0.1692 S32: 0.3657 S33: 0.1881 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 44 C 184 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8964 39.4044 27.2469 REMARK 3 T TENSOR REMARK 3 T11: -0.0427 T22: -0.2176 REMARK 3 T33: -0.1921 T12: -0.1051 REMARK 3 T13: -0.0007 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 7.7925 L22: 5.4133 REMARK 3 L33: 5.0789 L12: 2.4765 REMARK 3 L13: -4.8010 L23: -2.4938 REMARK 3 S TENSOR REMARK 3 S11: 0.4067 S12: -0.7314 S13: -0.1056 REMARK 3 S21: 0.6210 S22: -0.4916 S23: -0.2301 REMARK 3 S31: -0.2996 S32: 0.5593 S33: 0.0849 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 38 D 183 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0679 11.8923 29.8287 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: -0.2619 REMARK 3 T33: -0.1480 T12: -0.1406 REMARK 3 T13: 0.2609 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 5.0275 L22: 8.5152 REMARK 3 L33: 3.4981 L12: 2.3688 REMARK 3 L13: -2.0923 L23: -1.7918 REMARK 3 S TENSOR REMARK 3 S11: -0.6726 S12: 0.3594 S13: -0.5251 REMARK 3 S21: -0.8564 S22: 0.5575 S23: -0.6415 REMARK 3 S31: 0.4246 S32: -0.1260 S33: 0.1151 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-08. REMARK 100 THE RCSB ID CODE IS RCSB028237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-06; 21-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 90; 90 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A; BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 1.07225 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16670 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.038 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M BIS-TRIS(PH 5.5), 0.4M AMMONIUM REMARK 280 ACETATE, 25% POLYETHYLENE GLYCOL(PEG) 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.42850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.14275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.71425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 PHE A 29 REMARK 465 SER A 30 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 THR A 33 REMARK 465 LEU A 34 REMARK 465 ASP A 35 REMARK 465 LYS A 36 REMARK 465 VAL A 37 REMARK 465 PRO A 38 REMARK 465 LYS A 39 REMARK 465 SER A 40 REMARK 465 GLU A 41 REMARK 465 GLY A 42 REMARK 465 TYR A 43 REMARK 465 GLY A 104 REMARK 465 ASP A 105 REMARK 465 LYS A 106 REMARK 465 ASP A 185 REMARK 465 SER A 186 REMARK 465 THR A 187 REMARK 465 PHE A 188 REMARK 465 ASP A 189 REMARK 465 GLY A 190 REMARK 465 VAL A 191 REMARK 465 THR A 192 REMARK 465 ASP A 193 REMARK 465 LYS A 194 REMARK 465 PRO A 195 REMARK 465 ILE A 196 REMARK 465 LEU A 197 REMARK 465 ASP A 198 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 PHE B 29 REMARK 465 SER B 30 REMARK 465 ASP B 31 REMARK 465 GLU B 32 REMARK 465 THR B 33 REMARK 465 LEU B 34 REMARK 465 ASP B 35 REMARK 465 LYS B 36 REMARK 465 VAL B 37 REMARK 465 THR B 53 REMARK 465 ARG B 54 REMARK 465 ARG B 55 REMARK 465 GLU B 56 REMARK 465 GLN B 184 REMARK 465 ASP B 185 REMARK 465 SER B 186 REMARK 465 THR B 187 REMARK 465 PHE B 188 REMARK 465 ASP B 189 REMARK 465 GLY B 190 REMARK 465 VAL B 191 REMARK 465 THR B 192 REMARK 465 ASP B 193 REMARK 465 LYS B 194 REMARK 465 PRO B 195 REMARK 465 ILE B 196 REMARK 465 LEU B 197 REMARK 465 ASP B 198 REMARK 465 GLY C 27 REMARK 465 SER C 28 REMARK 465 PHE C 29 REMARK 465 SER C 30 REMARK 465 ASP C 31 REMARK 465 GLU C 32 REMARK 465 THR C 33 REMARK 465 LEU C 34 REMARK 465 ASP C 35 REMARK 465 LYS C 36 REMARK 465 VAL C 37 REMARK 465 PRO C 38 REMARK 465 LYS C 39 REMARK 465 SER C 40 REMARK 465 GLU C 41 REMARK 465 GLY C 42 REMARK 465 TYR C 43 REMARK 465 ALA C 50 REMARK 465 ASP C 185 REMARK 465 SER C 186 REMARK 465 THR C 187 REMARK 465 PHE C 188 REMARK 465 ASP C 189 REMARK 465 GLY C 190 REMARK 465 VAL C 191 REMARK 465 THR C 192 REMARK 465 ASP C 193 REMARK 465 LYS C 194 REMARK 465 PRO C 195 REMARK 465 ILE C 196 REMARK 465 LEU C 197 REMARK 465 ASP C 198 REMARK 465 GLY D 27 REMARK 465 SER D 28 REMARK 465 PHE D 29 REMARK 465 SER D 30 REMARK 465 ASP D 31 REMARK 465 GLU D 32 REMARK 465 THR D 33 REMARK 465 LEU D 34 REMARK 465 ASP D 35 REMARK 465 LYS D 36 REMARK 465 VAL D 37 REMARK 465 GLY D 52 REMARK 465 THR D 53 REMARK 465 ARG D 54 REMARK 465 ARG D 55 REMARK 465 GLU D 56 REMARK 465 GLN D 184 REMARK 465 ASP D 185 REMARK 465 SER D 186 REMARK 465 THR D 187 REMARK 465 PHE D 188 REMARK 465 ASP D 189 REMARK 465 GLY D 190 REMARK 465 VAL D 191 REMARK 465 THR D 192 REMARK 465 ASP D 193 REMARK 465 LYS D 194 REMARK 465 PRO D 195 REMARK 465 ILE D 196 REMARK 465 LEU D 197 REMARK 465 ASP D 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 GLN A 184 O CG CD OE1 NE2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 TYR B 43 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 183 O CG CD OE1 OE2 REMARK 470 ASP C 105 CG OD1 OD2 REMARK 470 LYS C 106 CG CD CE NZ REMARK 470 GLU C 107 CG CD OE1 OE2 REMARK 470 GLU C 183 CG CD OE1 OE2 REMARK 470 GLN C 184 O CG CD OE1 NE2 REMARK 470 LYS D 39 CG CD CE NZ REMARK 470 GLU D 41 CG CD OE1 OE2 REMARK 470 TYR D 43 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 183 O CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 50 -4.85 -148.65 REMARK 500 PRO A 86 147.02 -13.03 REMARK 500 PRO A 87 54.39 -4.05 REMARK 500 ASN A 101 -30.28 77.40 REMARK 500 GLU A 108 46.45 -102.49 REMARK 500 ASP A 109 53.71 -113.03 REMARK 500 PRO A 137 20.93 -78.87 REMARK 500 GLN A 165 -67.16 -95.37 REMARK 500 LYS A 166 -95.16 -108.92 REMARK 500 CYS B 44 44.25 -144.28 REMARK 500 SER B 45 30.45 -73.27 REMARK 500 ARG B 46 38.24 -141.69 REMARK 500 ALA B 50 -151.44 66.54 REMARK 500 GLN B 51 -151.69 -113.98 REMARK 500 TYR B 58 73.73 -110.21 REMARK 500 ASP B 68 73.88 44.81 REMARK 500 ASP B 70 -33.32 -136.02 REMARK 500 ALA B 85 142.89 -38.53 REMARK 500 PRO B 86 -63.16 -14.69 REMARK 500 ARG B 91 -73.78 -103.76 REMARK 500 GLU B 100 124.04 -34.43 REMARK 500 ASP B 109 -20.79 -170.52 REMARK 500 GLU B 119 -34.43 73.44 REMARK 500 PRO B 137 33.67 -77.90 REMARK 500 LEU B 177 24.32 -78.38 REMARK 500 ILE C 47 46.11 -86.04 REMARK 500 ASP C 68 70.35 45.05 REMARK 500 PRO C 86 -58.97 -19.34 REMARK 500 ASN C 101 -7.36 64.11 REMARK 500 ASP C 109 29.07 -75.45 REMARK 500 LYS C 166 -132.31 68.78 REMARK 500 TYR D 43 -134.85 -85.63 REMARK 500 CYS D 44 31.48 -74.07 REMARK 500 SER D 45 34.69 -73.76 REMARK 500 ASP D 70 -53.60 -140.61 REMARK 500 ALA D 84 68.35 -117.73 REMARK 500 PRO D 87 45.83 -70.06 REMARK 500 ARG D 91 -65.00 -104.37 REMARK 500 ARG D 99 -171.83 -69.02 REMARK 500 ASN D 101 71.62 -157.06 REMARK 500 CYS D 128 86.08 -153.93 REMARK 500 PRO D 137 30.14 -74.83 REMARK 500 PRO D 151 -160.80 -72.51 REMARK 500 ALA D 152 107.59 -33.40 REMARK 500 CYS D 182 -163.14 -129.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZOU RELATED DB: PDB DBREF 2ZOT A 29 198 UNP Q9HCB6 SPON1_HUMAN 29 198 DBREF 2ZOT B 29 198 UNP Q9HCB6 SPON1_HUMAN 29 198 DBREF 2ZOT C 29 198 UNP Q9HCB6 SPON1_HUMAN 29 198 DBREF 2ZOT D 29 198 UNP Q9HCB6 SPON1_HUMAN 29 198 SEQADV 2ZOT GLY A 27 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOT SER A 28 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOT GLY B 27 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOT SER B 28 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOT GLY C 27 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOT SER C 28 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOT GLY D 27 UNP Q9HCB6 EXPRESSION TAG SEQADV 2ZOT SER D 28 UNP Q9HCB6 EXPRESSION TAG SEQRES 1 A 172 GLY SER PHE SER ASP GLU THR LEU ASP LYS VAL PRO LYS SEQRES 2 A 172 SER GLU GLY TYR CYS SER ARG ILE LEU ARG ALA GLN GLY SEQRES 3 A 172 THR ARG ARG GLU GLY TYR THR GLU PHE SER LEU ARG VAL SEQRES 4 A 172 GLU GLY ASP PRO ASP PHE TYR LYS PRO GLY THR SER TYR SEQRES 5 A 172 ARG VAL THR LEU SER ALA ALA PRO PRO SER TYR PHE ARG SEQRES 6 A 172 GLY PHE THR LEU ILE ALA LEU ARG GLU ASN ARG GLU GLY SEQRES 7 A 172 ASP LYS GLU GLU ASP HIS ALA GLY THR PHE GLN ILE ILE SEQRES 8 A 172 ASP GLU GLU GLU THR GLN PHE MET SER ASN CYS PRO VAL SEQRES 9 A 172 ALA VAL THR GLU SER THR PRO ARG ARG ARG THR ARG ILE SEQRES 10 A 172 GLN VAL PHE TRP ILE ALA PRO PRO ALA GLY THR GLY CYS SEQRES 11 A 172 VAL ILE LEU LYS ALA SER ILE VAL GLN LYS ARG ILE ILE SEQRES 12 A 172 TYR PHE GLN ASP GLU GLY SER LEU THR LYS LYS LEU CYS SEQRES 13 A 172 GLU GLN ASP SER THR PHE ASP GLY VAL THR ASP LYS PRO SEQRES 14 A 172 ILE LEU ASP SEQRES 1 B 172 GLY SER PHE SER ASP GLU THR LEU ASP LYS VAL PRO LYS SEQRES 2 B 172 SER GLU GLY TYR CYS SER ARG ILE LEU ARG ALA GLN GLY SEQRES 3 B 172 THR ARG ARG GLU GLY TYR THR GLU PHE SER LEU ARG VAL SEQRES 4 B 172 GLU GLY ASP PRO ASP PHE TYR LYS PRO GLY THR SER TYR SEQRES 5 B 172 ARG VAL THR LEU SER ALA ALA PRO PRO SER TYR PHE ARG SEQRES 6 B 172 GLY PHE THR LEU ILE ALA LEU ARG GLU ASN ARG GLU GLY SEQRES 7 B 172 ASP LYS GLU GLU ASP HIS ALA GLY THR PHE GLN ILE ILE SEQRES 8 B 172 ASP GLU GLU GLU THR GLN PHE MET SER ASN CYS PRO VAL SEQRES 9 B 172 ALA VAL THR GLU SER THR PRO ARG ARG ARG THR ARG ILE SEQRES 10 B 172 GLN VAL PHE TRP ILE ALA PRO PRO ALA GLY THR GLY CYS SEQRES 11 B 172 VAL ILE LEU LYS ALA SER ILE VAL GLN LYS ARG ILE ILE SEQRES 12 B 172 TYR PHE GLN ASP GLU GLY SER LEU THR LYS LYS LEU CYS SEQRES 13 B 172 GLU GLN ASP SER THR PHE ASP GLY VAL THR ASP LYS PRO SEQRES 14 B 172 ILE LEU ASP SEQRES 1 C 172 GLY SER PHE SER ASP GLU THR LEU ASP LYS VAL PRO LYS SEQRES 2 C 172 SER GLU GLY TYR CYS SER ARG ILE LEU ARG ALA GLN GLY SEQRES 3 C 172 THR ARG ARG GLU GLY TYR THR GLU PHE SER LEU ARG VAL SEQRES 4 C 172 GLU GLY ASP PRO ASP PHE TYR LYS PRO GLY THR SER TYR SEQRES 5 C 172 ARG VAL THR LEU SER ALA ALA PRO PRO SER TYR PHE ARG SEQRES 6 C 172 GLY PHE THR LEU ILE ALA LEU ARG GLU ASN ARG GLU GLY SEQRES 7 C 172 ASP LYS GLU GLU ASP HIS ALA GLY THR PHE GLN ILE ILE SEQRES 8 C 172 ASP GLU GLU GLU THR GLN PHE MET SER ASN CYS PRO VAL SEQRES 9 C 172 ALA VAL THR GLU SER THR PRO ARG ARG ARG THR ARG ILE SEQRES 10 C 172 GLN VAL PHE TRP ILE ALA PRO PRO ALA GLY THR GLY CYS SEQRES 11 C 172 VAL ILE LEU LYS ALA SER ILE VAL GLN LYS ARG ILE ILE SEQRES 12 C 172 TYR PHE GLN ASP GLU GLY SER LEU THR LYS LYS LEU CYS SEQRES 13 C 172 GLU GLN ASP SER THR PHE ASP GLY VAL THR ASP LYS PRO SEQRES 14 C 172 ILE LEU ASP SEQRES 1 D 172 GLY SER PHE SER ASP GLU THR LEU ASP LYS VAL PRO LYS SEQRES 2 D 172 SER GLU GLY TYR CYS SER ARG ILE LEU ARG ALA GLN GLY SEQRES 3 D 172 THR ARG ARG GLU GLY TYR THR GLU PHE SER LEU ARG VAL SEQRES 4 D 172 GLU GLY ASP PRO ASP PHE TYR LYS PRO GLY THR SER TYR SEQRES 5 D 172 ARG VAL THR LEU SER ALA ALA PRO PRO SER TYR PHE ARG SEQRES 6 D 172 GLY PHE THR LEU ILE ALA LEU ARG GLU ASN ARG GLU GLY SEQRES 7 D 172 ASP LYS GLU GLU ASP HIS ALA GLY THR PHE GLN ILE ILE SEQRES 8 D 172 ASP GLU GLU GLU THR GLN PHE MET SER ASN CYS PRO VAL SEQRES 9 D 172 ALA VAL THR GLU SER THR PRO ARG ARG ARG THR ARG ILE SEQRES 10 D 172 GLN VAL PHE TRP ILE ALA PRO PRO ALA GLY THR GLY CYS SEQRES 11 D 172 VAL ILE LEU LYS ALA SER ILE VAL GLN LYS ARG ILE ILE SEQRES 12 D 172 TYR PHE GLN ASP GLU GLY SER LEU THR LYS LYS LEU CYS SEQRES 13 D 172 GLU GLN ASP SER THR PHE ASP GLY VAL THR ASP LYS PRO SEQRES 14 D 172 ILE LEU ASP SHEET 1 A 6 GLY A 52 ARG A 54 0 SHEET 2 A 6 ILE A 169 PHE A 171 1 O ILE A 169 N THR A 53 SHEET 3 A 6 VAL A 157 VAL A 164 -1 N ILE A 163 O TYR A 170 SHEET 4 A 6 GLY A 92 ARG A 99 -1 N LEU A 98 O ILE A 158 SHEET 5 A 6 VAL A 132 GLU A 134 -1 O VAL A 132 N LEU A 95 SHEET 6 A 6 THR A 122 PHE A 124 -1 N GLN A 123 O THR A 133 SHEET 1 B 4 GLY A 52 ARG A 54 0 SHEET 2 B 4 ILE A 169 PHE A 171 1 O ILE A 169 N THR A 53 SHEET 3 B 4 VAL A 157 VAL A 164 -1 N ILE A 163 O TYR A 170 SHEET 4 B 4 THR A 178 LEU A 181 -1 O LEU A 181 N VAL A 157 SHEET 1 C 4 PHE A 61 VAL A 65 0 SHEET 2 C 4 SER A 77 ALA A 84 -1 O SER A 83 N SER A 62 SHEET 3 C 4 ARG A 142 ILE A 148 -1 O VAL A 145 N VAL A 80 SHEET 4 C 4 THR A 113 GLN A 115 -1 N THR A 113 O ILE A 148 SHEET 1 D 2 ILE B 47 LEU B 48 0 SHEET 2 D 2 ILE B 169 TYR B 170 1 O ILE B 169 N LEU B 48 SHEET 1 E 4 PHE B 61 VAL B 65 0 SHEET 2 E 4 SER B 77 ALA B 84 -1 O THR B 81 N ARG B 64 SHEET 3 E 4 ARG B 142 ILE B 148 -1 O VAL B 145 N VAL B 80 SHEET 4 E 4 THR B 113 ILE B 116 -1 N THR B 113 O ILE B 148 SHEET 1 F 5 THR B 122 PHE B 124 0 SHEET 2 F 5 VAL B 132 GLU B 134 -1 O THR B 133 N GLN B 123 SHEET 3 F 5 THR B 94 ARG B 99 -1 N LEU B 95 O VAL B 132 SHEET 4 F 5 VAL B 157 SER B 162 -1 O ILE B 158 N LEU B 98 SHEET 5 F 5 THR B 178 LEU B 181 -1 O LEU B 181 N VAL B 157 SHEET 1 G 6 THR C 53 ARG C 54 0 SHEET 2 G 6 ILE C 168 PHE C 171 1 O ILE C 169 N THR C 53 SHEET 3 G 6 CYS C 156 GLN C 165 -1 N ILE C 163 O TYR C 170 SHEET 4 G 6 GLY C 92 ARG C 99 -1 N LEU C 98 O ILE C 158 SHEET 5 G 6 VAL C 132 GLU C 134 -1 O VAL C 132 N LEU C 95 SHEET 6 G 6 THR C 122 PHE C 124 -1 N GLN C 123 O THR C 133 SHEET 1 H 4 THR C 53 ARG C 54 0 SHEET 2 H 4 ILE C 168 PHE C 171 1 O ILE C 169 N THR C 53 SHEET 3 H 4 CYS C 156 GLN C 165 -1 N ILE C 163 O TYR C 170 SHEET 4 H 4 THR C 178 CYS C 182 -1 O LEU C 181 N VAL C 157 SHEET 1 I 4 PHE C 61 VAL C 65 0 SHEET 2 I 4 SER C 77 ALA C 84 -1 O THR C 81 N ARG C 64 SHEET 3 I 4 ARG C 142 ILE C 148 -1 O VAL C 145 N VAL C 80 SHEET 4 I 4 THR C 113 GLN C 115 -1 N THR C 113 O ILE C 148 SHEET 1 J 2 ILE D 47 ARG D 49 0 SHEET 2 J 2 ILE D 169 PHE D 171 1 O ILE D 169 N LEU D 48 SHEET 1 K 4 PHE D 61 VAL D 65 0 SHEET 2 K 4 SER D 77 ALA D 84 -1 O SER D 83 N SER D 62 SHEET 3 K 4 ARG D 142 ILE D 148 -1 O VAL D 145 N VAL D 80 SHEET 4 K 4 THR D 113 ILE D 116 -1 N THR D 113 O ILE D 148 SHEET 1 L 5 THR D 122 MET D 125 0 SHEET 2 L 5 CYS D 128 GLU D 134 -1 O THR D 133 N GLN D 123 SHEET 3 L 5 THR D 94 LEU D 98 -1 N LEU D 95 O VAL D 132 SHEET 4 L 5 VAL D 157 SER D 162 -1 O LYS D 160 N ILE D 96 SHEET 5 L 5 THR D 178 LEU D 181 -1 O LYS D 179 N LEU D 159 SSBOND 1 CYS A 44 CYS A 128 1555 1555 2.05 SSBOND 2 CYS A 156 CYS A 182 1555 1555 2.04 SSBOND 3 CYS B 44 CYS B 128 1555 1555 2.04 SSBOND 4 CYS B 156 CYS B 182 1555 1555 2.03 SSBOND 5 CYS C 44 CYS C 128 1555 1555 2.03 SSBOND 6 CYS C 156 CYS C 182 1555 1555 2.04 SSBOND 7 CYS D 44 CYS D 128 1555 1555 2.03 SSBOND 8 CYS D 156 CYS D 182 1555 1555 2.03 CRYST1 57.579 57.579 190.857 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017367 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005240 0.00000