PDB Short entry for 2ZT6 HEADER LIGASE 19-SEP-08 2ZT6 TITLE CRYSTAL STRUCTURE OF HUMAN GLYCYL-TRNA SYNTHETASE (GLYRS) IN COMPLEX TITLE 2 WITH AMPCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 55-739; COMPND 5 SYNONYM: GLYCINE-TRNA LIGASE, GLYRS; COMPND 6 EC: 6.1.1.14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GARS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS LIGASE, AP4A, GLYCINE, ATP, GLY-AMP, TRNA, AMINOACYL-TRNA SYNTHETASE, KEYWDS 2 ATP-BINDING, CHARCOT-MARIE-TOOTH DISEASE, DISEASE MUTATION, KEYWDS 3 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTEIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR R.T.GUO,X.L.YANG,P.SCHIMMEL REVDAT 2 01-NOV-23 2ZT6 1 REMARK SEQADV REVDAT 1 25-AUG-09 2ZT6 0 JRNL AUTH R.T.GUO,Y.E.CHONG,M.GUO,X.L.YANG JRNL TITL CRYSTAL STRUCTURES AND BIOCHEMICAL ANALYSES SUGGEST UNIQUE JRNL TITL 2 MECHANISM AND ROLE FOR HUMAN GLYRS IN AP4A HOMEOSTASIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 18960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 50.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 57 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : 0.62 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000028394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19674 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2PME REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM TRIS-HCL, 150MM NACL, 10MM MGCL2, REMARK 280 3.8-4.0M SODIUM FORMATE, PH7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.90950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.90950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.30400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.43100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.30400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.43100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.90950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.30400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.43100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.90950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.30400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.43100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 133.81900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 ARG A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 465 ASP A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 ARG A 25 REMARK 465 LYS A 26 REMARK 465 LEU A 27 REMARK 465 LYS A 28 REMARK 465 GLU A 29 REMARK 465 ASP A 30 REMARK 465 LYS A 31 REMARK 465 ALA A 32 REMARK 465 PRO A 33 REMARK 465 GLN A 34 REMARK 465 VAL A 35 REMARK 465 ASP A 36 REMARK 465 VAL A 37 REMARK 465 ASP A 38 REMARK 465 LYS A 39 REMARK 465 ALA A 40 REMARK 465 VAL A 41 REMARK 465 ALA A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 LYS A 45 REMARK 465 ALA A 46 REMARK 465 ARG A 47 REMARK 465 LYS A 48 REMARK 465 ARG A 49 REMARK 465 VAL A 50 REMARK 465 LEU A 51 REMARK 465 GLU A 52 REMARK 465 ALA A 53 REMARK 465 LYS A 54 REMARK 465 GLU A 55 REMARK 465 LEU A 56 REMARK 465 ALA A 57 REMARK 465 LEU A 58 REMARK 465 GLN A 59 REMARK 465 PRO A 60 REMARK 465 LYS A 61 REMARK 465 ASP A 62 REMARK 465 ASP A 63 REMARK 465 LEU A 432 REMARK 465 LYS A 433 REMARK 465 GLU A 434 REMARK 465 PRO A 435 REMARK 465 LYS A 436 REMARK 465 THR A 437 REMARK 465 VAL A 438 REMARK 465 ASN A 439 REMARK 465 VAL A 440 REMARK 465 VAL A 441 REMARK 465 GLN A 442 REMARK 465 PHE A 443 REMARK 465 GLU A 444 REMARK 465 PRO A 445 REMARK 465 SER A 446 REMARK 465 LYS A 447 REMARK 465 GLY A 448 REMARK 465 ALA A 449 REMARK 465 ILE A 450 REMARK 465 GLY A 451 REMARK 465 LYS A 452 REMARK 465 ALA A 453 REMARK 465 TYR A 454 REMARK 465 LYS A 455 REMARK 465 LYS A 456 REMARK 465 ASP A 457 REMARK 465 ALA A 458 REMARK 465 LYS A 459 REMARK 465 LEU A 460 REMARK 465 VAL A 461 REMARK 465 MET A 462 REMARK 465 GLU A 463 REMARK 465 TYR A 464 REMARK 465 LEU A 465 REMARK 465 ALA A 466 REMARK 465 ILE A 467 REMARK 465 CYS A 468 REMARK 465 ASP A 469 REMARK 465 GLU A 470 REMARK 465 CYS A 471 REMARK 465 TYR A 472 REMARK 465 ILE A 473 REMARK 465 THR A 474 REMARK 465 GLU A 475 REMARK 465 MET A 476 REMARK 465 GLU A 477 REMARK 465 MET A 478 REMARK 465 LEU A 479 REMARK 465 LEU A 480 REMARK 465 ASN A 481 REMARK 465 GLU A 482 REMARK 465 LYS A 483 REMARK 465 GLY A 484 REMARK 465 GLU A 485 REMARK 465 PHE A 486 REMARK 465 THR A 487 REMARK 465 ILE A 488 REMARK 465 GLU A 489 REMARK 465 THR A 490 REMARK 465 GLU A 491 REMARK 465 GLY A 492 REMARK 465 LYS A 493 REMARK 465 THR A 494 REMARK 465 PHE A 495 REMARK 465 GLN A 496 REMARK 465 LEU A 497 REMARK 465 THR A 498 REMARK 465 LYS A 499 REMARK 465 ASP A 500 REMARK 465 MET A 501 REMARK 465 ILE A 502 REMARK 465 ASN A 503 REMARK 465 VAL A 504 REMARK 465 LYS A 505 REMARK 465 ARG A 506 REMARK 465 PHE A 507 REMARK 465 GLN A 508 REMARK 465 LYS A 509 REMARK 465 THR A 510 REMARK 465 LEU A 511 REMARK 465 GLY A 674 REMARK 465 GLN A 675 REMARK 465 GLU A 676 REMARK 465 THR A 677 REMARK 465 GLY A 678 REMARK 465 LYS A 679 REMARK 465 LYS A 680 REMARK 465 GLU A 681 REMARK 465 THR A 682 REMARK 465 ILE A 683 REMARK 465 GLU A 684 REMARK 465 GLU A 685 REMARK 465 LEU A 686 REMARK 465 GLU A 687 REMARK 465 HIS A 688 REMARK 465 HIS A 689 REMARK 465 HIS A 690 REMARK 465 HIS A 691 REMARK 465 HIS A 692 REMARK 465 HIS A 693 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 86 8.33 -66.91 REMARK 500 PHE A 115 -72.64 -120.90 REMARK 500 LYS A 153 -87.90 -68.79 REMARK 500 GLN A 191 22.06 -160.22 REMARK 500 GLN A 197 -71.78 -3.29 REMARK 500 SER A 211 128.06 -38.89 REMARK 500 THR A 214 42.77 38.63 REMARK 500 ARG A 243 122.19 -38.68 REMARK 500 LYS A 255 -73.81 -52.27 REMARK 500 GLN A 262 -3.97 68.66 REMARK 500 ASN A 278 71.95 -64.19 REMARK 500 ILE A 280 -70.88 -63.25 REMARK 500 ARG A 283 34.07 -147.52 REMARK 500 LYS A 306 64.51 -64.12 REMARK 500 PRO A 309 0.93 -59.01 REMARK 500 SER A 323 164.72 -45.39 REMARK 500 GLU A 343 -70.86 -54.73 REMARK 500 GLN A 344 -9.59 -54.38 REMARK 500 ASN A 348 -88.77 -23.96 REMARK 500 ASN A 349 -165.84 -104.03 REMARK 500 ASP A 371 2.75 -66.26 REMARK 500 ASP A 409 47.76 -148.15 REMARK 500 ARG A 410 79.15 -62.12 REMARK 500 SER A 411 160.96 -45.52 REMARK 500 CYS A 412 -44.49 3.87 REMARK 500 TYR A 413 -82.78 -5.08 REMARK 500 GLU A 543 84.95 -68.31 REMARK 500 GLN A 571 13.88 -67.79 REMARK 500 SER A 596 149.31 -38.05 REMARK 500 PHE A 614 -156.40 -132.18 REMARK 500 ASP A 619 -169.14 -105.92 REMARK 500 MET A 638 -1.29 67.99 REMARK 500 ILE A 645 -14.14 -48.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC A 699 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PME RELATED DB: PDB REMARK 900 THE SAMPLE PROTEIN (APO FORM) REMARK 900 RELATED ID: 2PMF RELATED DB: PDB REMARK 900 G526R MUTANT REMARK 900 RELATED ID: 2ZT5 RELATED DB: PDB REMARK 900 RELATED ID: 2ZT7 RELATED DB: PDB REMARK 900 RELATED ID: 2ZT8 RELATED DB: PDB DBREF 2ZT6 A 1 685 UNP P41250 SYG_HUMAN 55 739 SEQADV 2ZT6 LEU A 686 UNP P41250 EXPRESSION TAG SEQADV 2ZT6 GLU A 687 UNP P41250 EXPRESSION TAG SEQADV 2ZT6 HIS A 688 UNP P41250 EXPRESSION TAG SEQADV 2ZT6 HIS A 689 UNP P41250 EXPRESSION TAG SEQADV 2ZT6 HIS A 690 UNP P41250 EXPRESSION TAG SEQADV 2ZT6 HIS A 691 UNP P41250 EXPRESSION TAG SEQADV 2ZT6 HIS A 692 UNP P41250 EXPRESSION TAG SEQADV 2ZT6 HIS A 693 UNP P41250 EXPRESSION TAG SEQRES 1 A 693 MET ASP GLY ALA GLY ALA GLU GLU VAL LEU ALA PRO LEU SEQRES 2 A 693 ARG LEU ALA VAL ARG GLN GLN GLY ASP LEU VAL ARG LYS SEQRES 3 A 693 LEU LYS GLU ASP LYS ALA PRO GLN VAL ASP VAL ASP LYS SEQRES 4 A 693 ALA VAL ALA GLU LEU LYS ALA ARG LYS ARG VAL LEU GLU SEQRES 5 A 693 ALA LYS GLU LEU ALA LEU GLN PRO LYS ASP ASP ILE VAL SEQRES 6 A 693 ASP ARG ALA LYS MET GLU ASP THR LEU LYS ARG ARG PHE SEQRES 7 A 693 PHE TYR ASP GLN ALA PHE ALA ILE TYR GLY GLY VAL SER SEQRES 8 A 693 GLY LEU TYR ASP PHE GLY PRO VAL GLY CYS ALA LEU LYS SEQRES 9 A 693 ASN ASN ILE ILE GLN THR TRP ARG GLN HIS PHE ILE GLN SEQRES 10 A 693 GLU GLU GLN ILE LEU GLU ILE ASP CYS THR MET LEU THR SEQRES 11 A 693 PRO GLU PRO VAL LEU LYS THR SER GLY HIS VAL ASP LYS SEQRES 12 A 693 PHE ALA ASP PHE MET VAL LYS ASP VAL LYS ASN GLY GLU SEQRES 13 A 693 CYS PHE ARG ALA ASP HIS LEU LEU LYS ALA HIS LEU GLN SEQRES 14 A 693 LYS LEU MET SER ASP LYS LYS CYS SER VAL GLU LYS LYS SEQRES 15 A 693 SER GLU MET GLU SER VAL LEU ALA GLN LEU ASP ASN TYR SEQRES 16 A 693 GLY GLN GLN GLU LEU ALA ASP LEU PHE VAL ASN TYR ASN SEQRES 17 A 693 VAL LYS SER PRO ILE THR GLY ASN ASP LEU SER PRO PRO SEQRES 18 A 693 VAL SER PHE ASN LEU MET PHE LYS THR PHE ILE GLY PRO SEQRES 19 A 693 GLY GLY ASN MET PRO GLY TYR LEU ARG PRO GLU THR ALA SEQRES 20 A 693 GLN GLY ILE PHE LEU ASN PHE LYS ARG LEU LEU GLU PHE SEQRES 21 A 693 ASN GLN GLY LYS LEU PRO PHE ALA ALA ALA GLN ILE GLY SEQRES 22 A 693 ASN SER PHE ARG ASN GLU ILE SER PRO ARG SER GLY LEU SEQRES 23 A 693 ILE ARG VAL ARG GLU PHE THR MET ALA GLU ILE GLU HIS SEQRES 24 A 693 PHE VAL ASP PRO SER GLU LYS ASP HIS PRO LYS PHE GLN SEQRES 25 A 693 ASN VAL ALA ASP LEU HIS LEU TYR LEU TYR SER ALA LYS SEQRES 26 A 693 ALA GLN VAL SER GLY GLN SER ALA ARG LYS MET ARG LEU SEQRES 27 A 693 GLY ASP ALA VAL GLU GLN GLY VAL ILE ASN ASN THR VAL SEQRES 28 A 693 LEU GLY TYR PHE ILE GLY ARG ILE TYR LEU TYR LEU THR SEQRES 29 A 693 LYS VAL GLY ILE SER PRO ASP LYS LEU ARG PHE ARG GLN SEQRES 30 A 693 HIS MET GLU ASN GLU MET ALA HIS TYR ALA CYS ASP CYS SEQRES 31 A 693 TRP ASP ALA GLU SER LYS THR SER TYR GLY TRP ILE GLU SEQRES 32 A 693 ILE VAL GLY CYS ALA ASP ARG SER CYS TYR ASP LEU SER SEQRES 33 A 693 CYS HIS ALA ARG ALA THR LYS VAL PRO LEU VAL ALA GLU SEQRES 34 A 693 LYS PRO LEU LYS GLU PRO LYS THR VAL ASN VAL VAL GLN SEQRES 35 A 693 PHE GLU PRO SER LYS GLY ALA ILE GLY LYS ALA TYR LYS SEQRES 36 A 693 LYS ASP ALA LYS LEU VAL MET GLU TYR LEU ALA ILE CYS SEQRES 37 A 693 ASP GLU CYS TYR ILE THR GLU MET GLU MET LEU LEU ASN SEQRES 38 A 693 GLU LYS GLY GLU PHE THR ILE GLU THR GLU GLY LYS THR SEQRES 39 A 693 PHE GLN LEU THR LYS ASP MET ILE ASN VAL LYS ARG PHE SEQRES 40 A 693 GLN LYS THR LEU TYR VAL GLU GLU VAL VAL PRO ASN VAL SEQRES 41 A 693 ILE GLU PRO SER PHE GLY LEU GLY ARG ILE MET TYR THR SEQRES 42 A 693 VAL PHE GLU HIS THR PHE HIS VAL ARG GLU GLY ASP GLU SEQRES 43 A 693 GLN ARG THR PHE PHE SER PHE PRO ALA VAL VAL ALA PRO SEQRES 44 A 693 PHE LYS CYS SER VAL LEU PRO LEU SER GLN ASN GLN GLU SEQRES 45 A 693 PHE MET PRO PHE VAL LYS GLU LEU SER GLU ALA LEU THR SEQRES 46 A 693 ARG HIS GLY VAL SER HIS LYS VAL ASP ASP SER SER GLY SEQRES 47 A 693 SER ILE GLY ARG ARG TYR ALA ARG THR ASP GLU ILE GLY SEQRES 48 A 693 VAL ALA PHE GLY VAL THR ILE ASP PHE ASP THR VAL ASN SEQRES 49 A 693 LYS THR PRO HIS THR ALA THR LEU ARG ASP ARG ASP SER SEQRES 50 A 693 MET ARG GLN ILE ARG ALA GLU ILE SER GLU LEU PRO SER SEQRES 51 A 693 ILE VAL GLN ASP LEU ALA ASN GLY ASN ILE THR TRP ALA SEQRES 52 A 693 ASP VAL GLU ALA ARG TYR PRO LEU PHE GLU GLY GLN GLU SEQRES 53 A 693 THR GLY LYS LYS GLU THR ILE GLU GLU LEU GLU HIS HIS SEQRES 54 A 693 HIS HIS HIS HIS HET APC A 699 31 HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 2 APC C11 H18 N5 O12 P3 FORMUL 3 HOH *114(H2 O) HELIX 1 1 ASP A 66 ARG A 77 1 12 HELIX 2 2 PHE A 84 GLY A 88 5 5 HELIX 3 3 GLY A 97 PHE A 115 1 19 HELIX 4 4 PHE A 115 GLN A 120 1 6 HELIX 5 5 GLU A 132 SER A 138 1 7 HELIX 6 6 GLY A 139 PHE A 144 1 6 HELIX 7 7 ALA A 160 ASP A 174 1 15 HELIX 8 8 SER A 178 ALA A 190 1 13 HELIX 9 9 GLN A 191 TYR A 195 5 5 HELIX 10 10 GLY A 196 TYR A 207 1 12 HELIX 11 11 THR A 246 LEU A 252 1 7 HELIX 12 12 ASN A 253 ASN A 261 1 9 HELIX 13 13 SER A 284 ARG A 288 5 5 HELIX 14 14 LYS A 310 ALA A 315 5 6 HELIX 15 15 SER A 323 SER A 329 1 7 HELIX 16 16 LEU A 338 GLN A 344 1 7 HELIX 17 17 THR A 350 GLY A 367 1 18 HELIX 18 18 SER A 369 ASP A 371 5 3 HELIX 19 19 CYS A 412 LYS A 423 1 12 HELIX 20 20 LEU A 527 THR A 538 1 12 HELIX 21 21 PHE A 573 HIS A 587 1 15 HELIX 22 22 SER A 599 ILE A 610 1 12 HELIX 23 23 ASP A 619 ASN A 624 1 6 HELIX 24 24 GLU A 647 ASN A 657 1 11 HELIX 25 25 THR A 661 TYR A 669 1 9 SHEET 1 A 2 ASP A 81 GLN A 82 0 SHEET 2 A 2 TYR A 94 ASP A 95 -1 O ASP A 95 N ASP A 81 SHEET 1 B 9 LEU A 122 GLU A 123 0 SHEET 2 B 9 PHE A 267 PHE A 276 1 O ALA A 270 N LEU A 122 SHEET 3 B 9 GLU A 291 VAL A 301 -1 O GLU A 298 N ALA A 269 SHEET 4 B 9 PRO A 523 GLY A 526 -1 O PRO A 523 N ILE A 297 SHEET 5 B 9 GLY A 400 ALA A 408 -1 N GLY A 406 O SER A 524 SHEET 6 B 9 CYS A 390 THR A 397 -1 N TRP A 391 O CYS A 407 SHEET 7 B 9 LEU A 373 GLN A 377 -1 N ARG A 374 O GLU A 394 SHEET 8 B 9 HIS A 318 TYR A 322 1 N TYR A 322 O PHE A 375 SHEET 9 B 9 ARG A 334 ARG A 337 -1 O ARG A 334 N LEU A 321 SHEET 1 C 4 LEU A 122 GLU A 123 0 SHEET 2 C 4 PHE A 267 PHE A 276 1 O ALA A 270 N LEU A 122 SHEET 3 C 4 GLU A 291 VAL A 301 -1 O GLU A 298 N ALA A 269 SHEET 4 C 4 ASN A 519 ILE A 521 -1 O ASN A 519 N VAL A 301 SHEET 1 D 3 LEU A 129 PRO A 131 0 SHEET 2 D 3 PRO A 239 LEU A 242 -1 O TYR A 241 N THR A 130 SHEET 3 D 3 PHE A 228 PHE A 231 -1 N THR A 230 O GLY A 240 SHEET 1 E 3 CYS A 157 ARG A 159 0 SHEET 2 E 3 ALA A 145 LYS A 150 -1 N VAL A 149 O PHE A 158 SHEET 3 E 3 VAL A 222 ASN A 225 -1 O VAL A 222 N MET A 148 SHEET 1 F 2 ALA A 428 LYS A 430 0 SHEET 2 F 2 GLU A 514 VAL A 516 -1 O GLU A 514 N LYS A 430 SHEET 1 G 2 PHE A 539 VAL A 541 0 SHEET 2 G 2 THR A 549 PHE A 551 -1 O PHE A 550 N HIS A 540 SHEET 1 H 5 HIS A 591 VAL A 593 0 SHEET 2 H 5 CYS A 562 PRO A 566 1 N VAL A 564 O LYS A 592 SHEET 3 H 5 VAL A 616 ILE A 618 1 O VAL A 616 N LEU A 565 SHEET 4 H 5 THR A 629 ARG A 633 -1 O THR A 631 N THR A 617 SHEET 5 H 5 GLN A 640 GLU A 644 -1 O ILE A 641 N LEU A 632 CISPEP 1 LEU A 265 PRO A 266 0 0.02 CISPEP 2 THR A 626 PRO A 627 0 0.05 SITE 1 AC1 15 ARG A 159 ARG A 277 GLU A 279 ILE A 287 SITE 2 AC1 15 ARG A 288 VAL A 289 PHE A 292 MET A 294 SITE 3 AC1 15 GLU A 403 ILE A 404 SER A 524 GLY A 526 SITE 4 AC1 15 ARG A 529 HOH A 782 HOH A 800 CRYST1 116.608 138.862 133.819 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008576 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007473 0.00000