PDB Short entry for 2ZXX HEADER CELL CYCLE/REPLICATION 08-JAN-09 2ZXX TITLE CRYSTAL STRUCTURE OF CDT1/GEMININ COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEMININ; COMPND 3 CHAIN: A, B, D, E; COMPND 4 FRAGMENT: GEMININ COILED-COIL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA REPLICATION FACTOR CDT1; COMPND 8 CHAIN: C, F; COMPND 9 FRAGMENT: RESIDUES 172-368; COMPND 10 SYNONYM: DOUBLE PARKED HOMOLOG, DUP, RETROVIRAL INSERTION COMPND 11 SITE 2 PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GEMININ, GMNN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A, PACYC-DUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: CDT1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-28A, PACYC-DUET KEYWDS COILED-COIL, CELL CYCLE, COILED COIL, DNA REPLICATION KEYWDS 2 INHIBITOR, PHOSPHOPROTEIN, DNA REPLICATION, DNA-BINDING, KEYWDS 3 NUCLEUS, PROTO-ONCOGENE, UBL CONJUGATION, CELL KEYWDS 4 CYCLE/REPLICATION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHO,C.LEE,B.S.HONG,J.M.CHOI REVDAT 1 17-FEB-09 2ZXX 0 SPRSDE 17-FEB-09 2ZXX 1WLQ JRNL AUTH C.LEE,B.S.HONG,J.M.CHOI,Y.KIM,S.WATANABE,Y.ISHIMI, JRNL AUTH 2 T.ENOMOTO,S.TADA,Y.KIM,Y.CHO JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF THE REPLICATION JRNL TITL 2 LICENSING FACTOR CDT1 BY GEMININ JRNL REF NATURE V. 430 913 2004 JRNL REFN ISSN 0028-0836 JRNL PMID 15286659 JRNL DOI 10.1038/NATURE02813 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 26561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5467 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : 4.54000 REMARK 3 B33 (A**2) : -2.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.738 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.365 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.297 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.674 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5566 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7495 ; 1.528 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 652 ; 6.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;38.826 ;24.430 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1078 ;22.916 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;22.492 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 809 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4214 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2849 ; 0.283 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3824 ; 0.330 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 239 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 99 ; 0.255 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3400 ; 0.944 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5378 ; 1.448 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2401 ; 2.064 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2117 ; 3.522 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2ZXX COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-09. REMARK 100 THE RCSB ID CODE IS RCSB028564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.787 REMARK 200 RESOLUTION RANGE LOW (A) : 112.509 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.88450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.16700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.88450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.16700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 79 REMARK 465 GLN A 80 REMARK 465 GLU A 81 REMARK 465 ALA A 82 REMARK 465 PHE A 83 REMARK 465 ASP A 84 REMARK 465 LEU A 85 REMARK 465 ILE A 86 REMARK 465 SER A 87 REMARK 465 ASN B 157 REMARK 465 THR C 172 REMARK 465 GLU C 173 REMARK 465 GLN C 174 REMARK 465 PRO C 175 REMARK 465 CYS C 176 REMARK 465 VAL C 177 REMARK 465 GLU C 178 REMARK 465 ALA C 292 REMARK 465 GLY C 293 REMARK 465 THR C 366 REMARK 465 GLU C 367 REMARK 465 LYS C 368 REMARK 465 THR D 79 REMARK 465 GLN D 80 REMARK 465 GLU D 81 REMARK 465 ALA D 82 REMARK 465 PHE D 83 REMARK 465 ASP D 84 REMARK 465 LEU D 85 REMARK 465 ILE D 86 REMARK 465 SER D 87 REMARK 465 LYS D 88 REMARK 465 GLU D 89 REMARK 465 ASN D 90 REMARK 465 PRO D 91 REMARK 465 SER D 92 REMARK 465 ASN E 157 REMARK 465 THR F 172 REMARK 465 GLU F 173 REMARK 465 GLN F 174 REMARK 465 PRO F 175 REMARK 465 CYS F 176 REMARK 465 VAL F 177 REMARK 465 GLU F 178 REMARK 465 ALA F 292 REMARK 465 GLY F 293 REMARK 465 GLY F 294 REMARK 465 THR F 366 REMARK 465 GLU F 367 REMARK 465 LYS F 368 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 89 -18.18 58.59 REMARK 500 GLN A 94 30.06 -85.03 REMARK 500 ARG A 130 -73.58 -55.63 REMARK 500 GLU A 134 -54.89 -23.81 REMARK 500 LEU A 155 7.85 -69.01 REMARK 500 GLU B 81 103.56 -26.90 REMARK 500 ASP B 84 -15.97 -42.67 REMARK 500 ILE B 86 -6.02 -140.50 REMARK 500 LYS B 88 49.98 -94.26 REMARK 500 LEU B 155 62.02 -67.97 REMARK 500 ALA C 180 103.60 91.45 REMARK 500 PRO C 192 -179.86 -67.36 REMARK 500 LEU C 197 43.08 76.71 REMARK 500 ASN C 267 21.35 -144.45 REMARK 500 VAL C 268 144.47 -38.82 REMARK 500 LEU C 288 -116.45 -120.57 REMARK 500 GLN C 290 -122.46 166.44 REMARK 500 ALA C 295 -164.25 -113.45 REMARK 500 GLN C 297 119.78 86.58 REMARK 500 ASN C 348 89.10 75.81 REMARK 500 ASP C 350 29.02 -75.13 REMARK 500 LYS D 133 -70.02 -61.34 REMARK 500 ASP D 137 -7.54 -56.91 REMARK 500 ALA D 139 -35.07 -38.37 REMARK 500 GLU E 81 91.76 -23.31 REMARK 500 LYS E 88 -71.40 -57.89 REMARK 500 GLU E 89 -166.34 -101.24 REMARK 500 LYS E 133 -75.69 -66.31 REMARK 500 GLU E 134 -24.50 -32.83 REMARK 500 ALA F 180 110.25 81.67 REMARK 500 LEU F 197 42.74 82.70 REMARK 500 ARG F 211 5.20 -66.25 REMARK 500 LYS F 233 -56.45 -26.09 REMARK 500 ARG F 247 -42.82 -24.15 REMARK 500 SER F 278 7.15 -66.03 REMARK 500 GLN F 290 -147.18 -79.29 REMARK 500 LYS F 319 -46.92 -29.10 REMARK 500 ASN F 330 -79.81 -26.20 REMARK 500 LEU F 340 167.83 -44.95 REMARK 500 THR F 341 -18.06 -159.31 REMARK 500 ASN F 348 58.13 88.51 REMARK 500 GLU F 351 -86.52 -77.14 REMARK 500 VAL F 352 141.06 22.65 REMARK 500 PRO F 363 150.16 -49.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN C 330 PRO C 331 143.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 2ZXX A 79 157 UNP O88513 GEMI_MOUSE 79 157 DBREF 2ZXX B 79 157 UNP O88513 GEMI_MOUSE 79 157 DBREF 2ZXX C 172 368 UNP Q8R4E9 CDT1_MOUSE 172 368 DBREF 2ZXX D 79 157 UNP O88513 GEMI_MOUSE 79 157 DBREF 2ZXX E 79 157 UNP O88513 GEMI_MOUSE 79 157 DBREF 2ZXX F 172 368 UNP Q8R4E9 CDT1_MOUSE 172 368 SEQRES 1 A 79 THR GLN GLU ALA PHE ASP LEU ILE SER LYS GLU ASN PRO SEQRES 2 A 79 SER SER GLN TYR TRP LYS GLU VAL ALA GLU GLN ARG ARG SEQRES 3 A 79 LYS ALA LEU TYR GLU ALA LEU LYS GLU ASN GLU LYS LEU SEQRES 4 A 79 HIS LYS GLU ILE GLU GLN LYS ASP SER GLU ILE ALA ARG SEQRES 5 A 79 LEU ARG LYS GLU ASN LYS ASP LEU ALA GLU VAL ALA GLU SEQRES 6 A 79 HIS VAL GLN TYR MSE ALA GLU VAL ILE GLU ARG LEU SER SEQRES 7 A 79 ASN SEQRES 1 B 79 THR GLN GLU ALA PHE ASP LEU ILE SER LYS GLU ASN PRO SEQRES 2 B 79 SER SER GLN TYR TRP LYS GLU VAL ALA GLU GLN ARG ARG SEQRES 3 B 79 LYS ALA LEU TYR GLU ALA LEU LYS GLU ASN GLU LYS LEU SEQRES 4 B 79 HIS LYS GLU ILE GLU GLN LYS ASP SER GLU ILE ALA ARG SEQRES 5 B 79 LEU ARG LYS GLU ASN LYS ASP LEU ALA GLU VAL ALA GLU SEQRES 6 B 79 HIS VAL GLN TYR MSE ALA GLU VAL ILE GLU ARG LEU SER SEQRES 7 B 79 ASN SEQRES 1 C 197 THR GLU GLN PRO CYS VAL GLU LYS ALA PRO ALA TYR GLN SEQRES 2 C 197 ARG PHE HIS ALA LEU ALA GLN PRO GLY LEU PRO GLY LEU SEQRES 3 C 197 VAL LEU PRO TYR LYS TYR GLN VAL LEU VAL GLU MSE PHE SEQRES 4 C 197 ARG SER MSE ASP THR ILE VAL SER MSE LEU HIS ASN ARG SEQRES 5 C 197 SER GLU THR VAL THR PHE ALA LYS VAL LYS GLN GLY VAL SEQRES 6 C 197 GLN GLU MSE MSE ARG LYS ARG PHE GLU GLU ARG ASN VAL SEQRES 7 C 197 GLY GLN ILE LYS THR VAL TYR PRO THR SER TYR ARG PHE SEQRES 8 C 197 ARG GLN GLU CYS ASN VAL PRO THR PHE LYS ASP SER ILE SEQRES 9 C 197 LYS ARG SER ASP TYR GLN LEU THR ILE GLU PRO LEU LEU SEQRES 10 C 197 GLY GLN GLU ALA GLY GLY ALA THR GLN LEU THR ALA THR SEQRES 11 C 197 CYS LEU LEU GLN ARG ARG GLN VAL PHE ARG GLN ASN LEU SEQRES 12 C 197 VAL GLU ARG VAL LYS GLU GLN HIS LYS VAL PHE LEU ALA SEQRES 13 C 197 SER LEU ASN PRO PRO MSE ALA VAL PRO ASP ASP GLN LEU SEQRES 14 C 197 THR ARG TRP HIS PRO ARG PHE ASN VAL ASP GLU VAL PRO SEQRES 15 C 197 ASP ILE GLU PRO ALA GLU LEU PRO GLN PRO PRO VAL THR SEQRES 16 C 197 GLU LYS SEQRES 1 D 79 THR GLN GLU ALA PHE ASP LEU ILE SER LYS GLU ASN PRO SEQRES 2 D 79 SER SER GLN TYR TRP LYS GLU VAL ALA GLU GLN ARG ARG SEQRES 3 D 79 LYS ALA LEU TYR GLU ALA LEU LYS GLU ASN GLU LYS LEU SEQRES 4 D 79 HIS LYS GLU ILE GLU GLN LYS ASP SER GLU ILE ALA ARG SEQRES 5 D 79 LEU ARG LYS GLU ASN LYS ASP LEU ALA GLU VAL ALA GLU SEQRES 6 D 79 HIS VAL GLN TYR MSE ALA GLU VAL ILE GLU ARG LEU SER SEQRES 7 D 79 ASN SEQRES 1 E 79 THR GLN GLU ALA PHE ASP LEU ILE SER LYS GLU ASN PRO SEQRES 2 E 79 SER SER GLN TYR TRP LYS GLU VAL ALA GLU GLN ARG ARG SEQRES 3 E 79 LYS ALA LEU TYR GLU ALA LEU LYS GLU ASN GLU LYS LEU SEQRES 4 E 79 HIS LYS GLU ILE GLU GLN LYS ASP SER GLU ILE ALA ARG SEQRES 5 E 79 LEU ARG LYS GLU ASN LYS ASP LEU ALA GLU VAL ALA GLU SEQRES 6 E 79 HIS VAL GLN TYR MSE ALA GLU VAL ILE GLU ARG LEU SER SEQRES 7 E 79 ASN SEQRES 1 F 197 THR GLU GLN PRO CYS VAL GLU LYS ALA PRO ALA TYR GLN SEQRES 2 F 197 ARG PHE HIS ALA LEU ALA GLN PRO GLY LEU PRO GLY LEU SEQRES 3 F 197 VAL LEU PRO TYR LYS TYR GLN VAL LEU VAL GLU MSE PHE SEQRES 4 F 197 ARG SER MSE ASP THR ILE VAL SER MSE LEU HIS ASN ARG SEQRES 5 F 197 SER GLU THR VAL THR PHE ALA LYS VAL LYS GLN GLY VAL SEQRES 6 F 197 GLN GLU MSE MSE ARG LYS ARG PHE GLU GLU ARG ASN VAL SEQRES 7 F 197 GLY GLN ILE LYS THR VAL TYR PRO THR SER TYR ARG PHE SEQRES 8 F 197 ARG GLN GLU CYS ASN VAL PRO THR PHE LYS ASP SER ILE SEQRES 9 F 197 LYS ARG SER ASP TYR GLN LEU THR ILE GLU PRO LEU LEU SEQRES 10 F 197 GLY GLN GLU ALA GLY GLY ALA THR GLN LEU THR ALA THR SEQRES 11 F 197 CYS LEU LEU GLN ARG ARG GLN VAL PHE ARG GLN ASN LEU SEQRES 12 F 197 VAL GLU ARG VAL LYS GLU GLN HIS LYS VAL PHE LEU ALA SEQRES 13 F 197 SER LEU ASN PRO PRO MSE ALA VAL PRO ASP ASP GLN LEU SEQRES 14 F 197 THR ARG TRP HIS PRO ARG PHE ASN VAL ASP GLU VAL PRO SEQRES 15 F 197 ASP ILE GLU PRO ALA GLU LEU PRO GLN PRO PRO VAL THR SEQRES 16 F 197 GLU LYS MODRES 2ZXX MSE A 148 MET SELENOMETHIONINE MODRES 2ZXX MSE B 148 MET SELENOMETHIONINE MODRES 2ZXX MSE C 209 MET SELENOMETHIONINE MODRES 2ZXX MSE C 213 MET SELENOMETHIONINE MODRES 2ZXX MSE C 219 MET SELENOMETHIONINE MODRES 2ZXX MSE C 239 MET SELENOMETHIONINE MODRES 2ZXX MSE C 240 MET SELENOMETHIONINE MODRES 2ZXX MSE C 333 MET SELENOMETHIONINE MODRES 2ZXX MSE D 148 MET SELENOMETHIONINE MODRES 2ZXX MSE E 148 MET SELENOMETHIONINE MODRES 2ZXX MSE F 209 MET SELENOMETHIONINE MODRES 2ZXX MSE F 213 MET SELENOMETHIONINE MODRES 2ZXX MSE F 219 MET SELENOMETHIONINE MODRES 2ZXX MSE F 239 MET SELENOMETHIONINE MODRES 2ZXX MSE F 240 MET SELENOMETHIONINE MODRES 2ZXX MSE F 333 MET SELENOMETHIONINE HET MSE A 148 8 HET MSE B 148 8 HET MSE C 209 8 HET MSE C 213 8 HET MSE C 219 8 HET MSE C 239 8 HET MSE C 240 8 HET MSE C 333 8 HET MSE D 148 8 HET MSE E 148 8 HET MSE F 209 8 HET MSE F 213 8 HET MSE F 219 8 HET MSE F 239 8 HET MSE F 240 8 HET MSE F 333 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 7 HOH *9(H2 O) HELIX 1 1 GLN A 94 ASP A 137 1 44 HELIX 2 2 LEU A 138 LEU A 155 1 18 HELIX 3 3 SER B 92 LEU B 155 1 64 HELIX 4 4 PRO C 181 PHE C 186 1 6 HELIX 5 5 HIS C 187 GLN C 191 5 5 HELIX 6 6 PRO C 200 ARG C 223 1 24 HELIX 7 7 THR C 228 ARG C 241 1 14 HELIX 8 8 GLU C 245 TYR C 256 1 12 HELIX 9 9 LYS C 276 SER C 278 5 3 HELIX 10 10 THR C 299 ALA C 327 1 29 HELIX 11 11 PRO C 336 LEU C 340 5 5 HELIX 12 12 ASN C 348 VAL C 352 5 5 HELIX 13 13 GLN D 94 ASP D 137 1 44 HELIX 14 14 LEU D 138 ARG D 154 1 17 HELIX 15 15 GLU E 81 SER E 87 1 7 HELIX 16 16 SER E 92 LEU E 155 1 64 HELIX 17 17 PRO F 181 PHE F 186 1 6 HELIX 18 18 PHE F 186 GLN F 191 1 6 HELIX 19 19 PRO F 200 ARG F 223 1 24 HELIX 20 20 THR F 228 ARG F 241 1 14 HELIX 21 21 GLU F 245 TYR F 256 1 12 HELIX 22 22 LYS F 276 SER F 278 5 3 HELIX 23 23 THR F 299 LEU F 329 1 31 SHEET 1 A 2 TYR C 260 CYS C 266 0 SHEET 2 A 2 TYR C 280 PRO C 286 -1 O THR C 283 N ARG C 263 SHEET 1 B 2 TYR F 260 CYS F 266 0 SHEET 2 B 2 TYR F 280 PRO F 286 -1 O GLU F 285 N ARG F 261 LINK C TYR A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N ALA A 149 1555 1555 1.34 LINK C TYR B 147 N MSE B 148 1555 1555 1.32 LINK C MSE B 148 N ALA B 149 1555 1555 1.33 LINK C GLU C 208 N MSE C 209 1555 1555 1.33 LINK C MSE C 209 N PHE C 210 1555 1555 1.33 LINK C SER C 212 N MSE C 213 1555 1555 1.32 LINK C MSE C 213 N ASP C 214 1555 1555 1.33 LINK C SER C 218 N MSE C 219 1555 1555 1.33 LINK C MSE C 219 N LEU C 220 1555 1555 1.32 LINK C GLU C 238 N MSE C 239 1555 1555 1.33 LINK C MSE C 239 N MSE C 240 1555 1555 1.33 LINK C MSE C 240 N ARG C 241 1555 1555 1.33 LINK C PRO C 332 N MSE C 333 1555 1555 1.32 LINK C MSE C 333 N ALA C 334 1555 1555 1.33 LINK C TYR D 147 N MSE D 148 1555 1555 1.32 LINK C MSE D 148 N ALA D 149 1555 1555 1.33 LINK C TYR E 147 N MSE E 148 1555 1555 1.32 LINK C MSE E 148 N ALA E 149 1555 1555 1.33 LINK C GLU F 208 N MSE F 209 1555 1555 1.32 LINK C MSE F 209 N PHE F 210 1555 1555 1.33 LINK C SER F 212 N MSE F 213 1555 1555 1.33 LINK C MSE F 213 N ASP F 214 1555 1555 1.33 LINK C SER F 218 N MSE F 219 1555 1555 1.32 LINK C MSE F 219 N LEU F 220 1555 1555 1.33 LINK C GLU F 238 N MSE F 239 1555 1555 1.33 LINK C MSE F 239 N MSE F 240 1555 1555 1.32 LINK C MSE F 240 N ARG F 241 1555 1555 1.34 LINK C PRO F 332 N MSE F 333 1555 1555 1.34 LINK C MSE F 333 N ALA F 334 1555 1555 1.33 CRYST1 113.769 94.334 115.572 90.00 103.66 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008790 0.000000 0.002136 0.00000 SCALE2 0.000000 0.010601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008904 0.00000