PDB Short entry for 3A1A HEADER TRANSFERASE 28-MAR-09 3A1A TITLE CRYSTAL STRUCTURE OF THE DNMT3A ADD DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADD(ATRX-DNMT3-DNMT3L) DOMAIN, RESIDUES 476-614; COMPND 5 SYNONYM: DNMT3A, DNA METHYLTRANSFERASE HSAIIIA, DNA MTASE HSAIIIA, COMPND 6 M.HSAIIIA; COMPND 7 EC: 2.1.1.37; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNMT3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS ZINC-FINGER, ALTERNATIVE PROMOTER USAGE, DNA-BINDING, METAL-BINDING, KEYWDS 2 METHYLTRANSFERASE, NUCLEUS, PHOSPHOPROTEIN, S-ADENOSYL-L-METHIONINE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OTANI,K.ARITA,M.ARIYOSHI,M.SHIRAKAWA REVDAT 3 13-MAR-24 3A1A 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3A1A 1 VERSN REVDAT 1 10-NOV-09 3A1A 0 JRNL AUTH J.OTANI,T.NANKUMO,K.ARITA,S.INAMOTO,M.ARIYOSHI,M.SHIRAKAWA JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF H3K4 METHYLATION STATUS JRNL TITL 2 BY THE DNA METHYLTRANSFERASE 3A ATRX-DNMT3-DNMT3L DOMAIN JRNL REF EMBO REP. V. 10 1235 2009 JRNL REFN ISSN 1469-221X JRNL PMID 19834512 JRNL DOI 10.1038/EMBOR.2009.218 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 6245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 306 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 431 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.360 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.429 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1065 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1432 ; 1.316 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 132 ; 6.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;33.672 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 179 ;16.831 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.497 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 147 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 829 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 453 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 715 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 37 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 675 ; 0.463 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1044 ; 0.825 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 451 ; 1.419 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 388 ; 1.999 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 474 A 478 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1170 -11.8890 -9.7720 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: -0.0279 REMARK 3 T33: -0.0966 T12: -0.1224 REMARK 3 T13: -0.0403 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 45.6780 L22: 70.4567 REMARK 3 L33: 28.1323 L12: 51.6719 REMARK 3 L13: -21.2478 L23: -18.8900 REMARK 3 S TENSOR REMARK 3 S11: -0.2593 S12: 0.9760 S13: 2.2213 REMARK 3 S21: -1.4689 S22: 0.8221 S23: 1.0591 REMARK 3 S31: -1.1515 S32: 1.6617 S33: -0.5628 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 479 A 485 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3820 -11.5190 -3.5660 REMARK 3 T TENSOR REMARK 3 T11: -0.0925 T22: -0.0340 REMARK 3 T33: 0.0675 T12: -0.2326 REMARK 3 T13: -0.0332 T23: 0.0962 REMARK 3 L TENSOR REMARK 3 L11: 16.7445 L22: 14.2136 REMARK 3 L33: 39.3216 L12: -1.2715 REMARK 3 L13: 19.6860 L23: -0.8021 REMARK 3 S TENSOR REMARK 3 S11: -0.3907 S12: 0.6833 S13: 0.3986 REMARK 3 S21: -1.2620 S22: 0.1364 S23: -0.9931 REMARK 3 S31: -0.2946 S32: 2.1059 S33: 0.2542 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 486 A 491 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4240 -6.5340 1.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: -0.1532 REMARK 3 T33: 0.0700 T12: -0.0806 REMARK 3 T13: -0.2384 T23: 0.0706 REMARK 3 L TENSOR REMARK 3 L11: 37.7359 L22: 41.0738 REMARK 3 L33: 20.0360 L12: 7.4609 REMARK 3 L13: -2.1044 L23: -0.1688 REMARK 3 S TENSOR REMARK 3 S11: 0.2192 S12: -0.5604 S13: 0.4215 REMARK 3 S21: 1.2903 S22: -1.0859 S23: -1.4237 REMARK 3 S31: -1.3230 S32: 1.3916 S33: 0.8668 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 492 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9940 -7.1820 -4.5710 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: -0.1593 REMARK 3 T33: 0.0449 T12: -0.1195 REMARK 3 T13: -0.0918 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 3.7674 L22: 8.3233 REMARK 3 L33: 26.1100 L12: -5.1887 REMARK 3 L13: -2.7187 L23: -1.5867 REMARK 3 S TENSOR REMARK 3 S11: -0.3868 S12: 0.1945 S13: 0.6521 REMARK 3 S21: -0.3082 S22: 0.1933 S23: -0.6197 REMARK 3 S31: -2.2577 S32: 0.8329 S33: 0.1936 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 502 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6160 -7.1490 2.4080 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: -0.0474 REMARK 3 T33: 0.3159 T12: 0.0215 REMARK 3 T13: -0.2213 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 22.9289 L22: 26.3051 REMARK 3 L33: 16.9865 L12: 19.3983 REMARK 3 L13: -16.0905 L23: -6.1065 REMARK 3 S TENSOR REMARK 3 S11: -1.1824 S12: -1.2383 S13: 2.7917 REMARK 3 S21: 0.2351 S22: -0.3324 S23: 1.1083 REMARK 3 S31: -1.4829 S32: 0.8932 S33: 1.5148 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 508 A 515 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5120 -10.6430 1.3700 REMARK 3 T TENSOR REMARK 3 T11: -0.0523 T22: -0.0781 REMARK 3 T33: 0.0231 T12: 0.0391 REMARK 3 T13: -0.0371 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.1116 L22: 0.0072 REMARK 3 L33: 10.4382 L12: 0.0284 REMARK 3 L13: -1.0792 L23: -0.2749 REMARK 3 S TENSOR REMARK 3 S11: -0.2143 S12: -0.1504 S13: 0.2973 REMARK 3 S21: -0.2279 S22: 0.3345 S23: 0.1834 REMARK 3 S31: -0.6344 S32: -0.4493 S33: -0.1202 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 516 A 521 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5920 -10.2540 -4.4310 REMARK 3 T TENSOR REMARK 3 T11: -0.0495 T22: -0.1555 REMARK 3 T33: -0.1292 T12: 0.2031 REMARK 3 T13: -0.0690 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 44.4305 L22: 34.0496 REMARK 3 L33: 9.8528 L12: 33.3674 REMARK 3 L13: 10.7563 L23: 9.9674 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.0246 S13: 0.6894 REMARK 3 S21: -0.0186 S22: -0.5273 S23: 0.0600 REMARK 3 S31: -0.4410 S32: -0.9739 S33: 0.5675 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 522 A 526 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2850 -16.5590 -2.2610 REMARK 3 T TENSOR REMARK 3 T11: 0.0058 T22: -0.1328 REMARK 3 T33: -0.0540 T12: -0.0445 REMARK 3 T13: -0.0050 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 9.5553 L22: 46.1639 REMARK 3 L33: 6.6872 L12: -7.4411 REMARK 3 L13: -0.5763 L23: -15.9389 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: 0.1020 S13: 0.3050 REMARK 3 S21: -0.0510 S22: -0.0596 S23: 0.1754 REMARK 3 S31: -1.2471 S32: -0.9355 S33: -0.0096 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 527 A 531 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6320 -28.3380 -5.3970 REMARK 3 T TENSOR REMARK 3 T11: -0.2195 T22: -0.0256 REMARK 3 T33: -0.0938 T12: 0.0912 REMARK 3 T13: -0.0057 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 18.1343 L22: 23.5881 REMARK 3 L33: 7.4448 L12: 6.6494 REMARK 3 L13: -1.7234 L23: 4.9630 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: 0.6343 S13: 0.0630 REMARK 3 S21: -1.3580 S22: 0.1858 S23: 0.2133 REMARK 3 S31: 0.0725 S32: -0.3145 S33: -0.2074 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 532 A 537 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1470 -25.8010 -3.9750 REMARK 3 T TENSOR REMARK 3 T11: -0.2714 T22: -0.0892 REMARK 3 T33: -0.1216 T12: 0.0913 REMARK 3 T13: -0.0046 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 19.2007 L22: 0.5989 REMARK 3 L33: 4.3448 L12: 2.7541 REMARK 3 L13: 0.2322 L23: 0.9742 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: -0.0794 S13: -0.1014 REMARK 3 S21: 0.1533 S22: 0.0790 S23: -0.1964 REMARK 3 S31: -0.0873 S32: -0.2206 S33: -0.1312 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 538 A 547 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2140 -23.6500 -6.8790 REMARK 3 T TENSOR REMARK 3 T11: -0.3756 T22: -0.1180 REMARK 3 T33: -0.1110 T12: 0.0093 REMARK 3 T13: 0.0596 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.9680 L22: 6.9984 REMARK 3 L33: 16.5356 L12: 3.3129 REMARK 3 L13: 5.6564 L23: 1.9552 REMARK 3 S TENSOR REMARK 3 S11: 0.3021 S12: 0.0621 S13: 0.3215 REMARK 3 S21: -0.1603 S22: -0.3344 S23: 0.1151 REMARK 3 S31: -0.0960 S32: 0.3951 S33: 0.0323 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 548 A 555 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7990 -30.4770 4.7740 REMARK 3 T TENSOR REMARK 3 T11: -0.1605 T22: 0.0549 REMARK 3 T33: -0.0710 T12: -0.0423 REMARK 3 T13: 0.0347 T23: 0.0906 REMARK 3 L TENSOR REMARK 3 L11: 30.3516 L22: 22.2521 REMARK 3 L33: 4.9113 L12: -13.7175 REMARK 3 L13: -7.4494 L23: 10.4016 REMARK 3 S TENSOR REMARK 3 S11: -0.8100 S12: -1.6769 S13: -1.4980 REMARK 3 S21: 1.0825 S22: 0.2668 S23: 0.8619 REMARK 3 S31: 1.0835 S32: -0.3184 S33: 0.5432 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 556 A 560 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7930 -24.7110 -2.0920 REMARK 3 T TENSOR REMARK 3 T11: -0.2903 T22: -0.0462 REMARK 3 T33: -0.1573 T12: 0.0740 REMARK 3 T13: -0.0570 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 9.4551 L22: 11.5237 REMARK 3 L33: 14.5997 L12: 7.7649 REMARK 3 L13: -2.6052 L23: 6.3132 REMARK 3 S TENSOR REMARK 3 S11: 0.4981 S12: -0.4029 S13: -0.0453 REMARK 3 S21: 0.3336 S22: -0.7848 S23: 0.1208 REMARK 3 S31: -0.1372 S32: 0.2558 S33: 0.2867 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 561 A 567 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0540 -21.2720 -4.3200 REMARK 3 T TENSOR REMARK 3 T11: -0.2553 T22: -0.1451 REMARK 3 T33: -0.1121 T12: 0.0437 REMARK 3 T13: 0.0122 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 18.7500 L22: 8.5882 REMARK 3 L33: 5.9347 L12: -0.2231 REMARK 3 L13: 5.3093 L23: -4.9125 REMARK 3 S TENSOR REMARK 3 S11: -0.4321 S12: 0.9218 S13: -0.0110 REMARK 3 S21: -0.4502 S22: 0.1049 S23: -0.1270 REMARK 3 S31: 0.0387 S32: 0.8264 S33: 0.3271 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 568 A 575 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8600 -28.6550 -3.2540 REMARK 3 T TENSOR REMARK 3 T11: -0.2857 T22: -0.0478 REMARK 3 T33: 0.0156 T12: 0.1066 REMARK 3 T13: -0.0886 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 42.9717 L22: 15.5909 REMARK 3 L33: 23.9369 L12: 20.2410 REMARK 3 L13: -20.6473 L23: -9.1752 REMARK 3 S TENSOR REMARK 3 S11: -0.9301 S12: 1.2095 S13: -2.8243 REMARK 3 S21: -0.4812 S22: 0.7757 S23: -0.8388 REMARK 3 S31: 1.8286 S32: 0.6452 S33: 0.1544 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 576 A 584 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4010 -29.7330 3.4350 REMARK 3 T TENSOR REMARK 3 T11: -0.0393 T22: 0.0376 REMARK 3 T33: 0.0141 T12: -0.1335 REMARK 3 T13: -0.0997 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 24.5883 L22: 8.2969 REMARK 3 L33: 6.1942 L12: -2.9001 REMARK 3 L13: -6.2475 L23: -2.7551 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: -0.3038 S13: -1.5740 REMARK 3 S21: 0.6297 S22: 0.1243 S23: -0.1768 REMARK 3 S31: 1.5414 S32: -0.6073 S33: -0.0647 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 585 A 594 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0810 -22.9020 9.0370 REMARK 3 T TENSOR REMARK 3 T11: -0.1723 T22: 0.0554 REMARK 3 T33: -0.0810 T12: -0.0030 REMARK 3 T13: -0.1149 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 34.6994 L22: 4.5919 REMARK 3 L33: 6.4519 L12: 10.8738 REMARK 3 L13: -9.3734 L23: -0.7827 REMARK 3 S TENSOR REMARK 3 S11: 0.2640 S12: -1.0494 S13: -0.2207 REMARK 3 S21: 0.5501 S22: 0.2116 S23: 0.1992 REMARK 3 S31: 0.1993 S32: -0.1814 S33: -0.4756 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 595 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3490 -16.0530 9.0950 REMARK 3 T TENSOR REMARK 3 T11: -0.2495 T22: 0.1147 REMARK 3 T33: 0.0271 T12: 0.0438 REMARK 3 T13: -0.0665 T23: -0.1737 REMARK 3 L TENSOR REMARK 3 L11: 7.9024 L22: 14.7635 REMARK 3 L33: 46.4181 L12: -9.9638 REMARK 3 L13: 16.2364 L23: -15.1113 REMARK 3 S TENSOR REMARK 3 S11: -0.5932 S12: -0.9615 S13: 1.0880 REMARK 3 S21: 1.6388 S22: 0.1844 S23: -0.6004 REMARK 3 S31: -1.6432 S32: -1.1137 S33: 0.4088 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 600 A 605 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5400 -14.4270 10.7280 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.2903 REMARK 3 T33: -0.0725 T12: 0.1588 REMARK 3 T13: 0.0345 T23: -0.1123 REMARK 3 L TENSOR REMARK 3 L11: 42.5546 L22: 4.4603 REMARK 3 L33: 23.1366 L12: -12.1821 REMARK 3 L13: -3.7882 L23: 5.7944 REMARK 3 S TENSOR REMARK 3 S11: -1.0290 S12: -0.8646 S13: 0.1735 REMARK 3 S21: 0.8344 S22: 1.3196 S23: 0.5831 REMARK 3 S31: -0.3596 S32: -0.9537 S33: -0.2906 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 606 A 609 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9620 -10.8140 6.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.2125 T22: -0.1128 REMARK 3 T33: 0.1234 T12: 0.2237 REMARK 3 T13: -0.0113 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 28.8279 L22: 71.7392 REMARK 3 L33: 102.8674 L12: -20.5423 REMARK 3 L13: 6.5062 L23: 31.2482 REMARK 3 S TENSOR REMARK 3 S11: 0.8280 S12: 0.4924 S13: 1.3273 REMARK 3 S21: 0.8859 S22: -0.1988 S23: 0.7856 REMARK 3 S31: 2.7132 S32: 0.3025 S33: -0.6292 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000028685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-07; 19-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0; 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A; BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 1.28221, 1.28333, 1.25730, REMARK 200 1.29001 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6551 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.796 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 8000, 0.1M TRIS-HCL, 0.2M REMARK 280 MAGNESIUM SULFATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.31633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.63267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.47450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 115.79083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.15817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.31633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 92.63267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 115.79083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.47450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.15817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 471 REMARK 465 PRO A 472 REMARK 465 LEU A 473 REMARK 465 LYS A 577 REMARK 465 GLU A 578 REMARK 465 ASP A 579 REMARK 465 PRO A 580 REMARK 465 ALA A 610 REMARK 465 ASN A 611 REMARK 465 ASN A 612 REMARK 465 HIS A 613 REMARK 465 ASP A 614 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 596 CZ ARG A 596 NH1 0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 544 -83.93 -112.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 494 SG REMARK 620 2 CYS A 497 SG 111.7 REMARK 620 3 CYS A 514 SG 116.4 111.3 REMARK 620 4 CYS A 517 SG 105.9 110.3 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 537 SG REMARK 620 2 CYS A 540 SG 110.1 REMARK 620 3 CYS A 559 SG 108.9 107.4 REMARK 620 4 CYS A 562 SG 115.3 108.4 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 549 SG REMARK 620 2 CYS A 554 SG 111.7 REMARK 620 3 CYS A 583 SG 110.6 109.6 REMARK 620 4 CYS A 586 SG 101.1 103.1 120.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A1B RELATED DB: PDB REMARK 900 DNMT3A ADD DOMAIN IN COMPLEX WITH HISTONE H3 DBREF 3A1A A 476 614 UNP Q9Y6K1 DNM3A_HUMAN 476 614 SEQADV 3A1A GLY A 471 UNP Q9Y6K1 EXPRESSION TAG SEQADV 3A1A PRO A 472 UNP Q9Y6K1 EXPRESSION TAG SEQADV 3A1A LEU A 473 UNP Q9Y6K1 EXPRESSION TAG SEQADV 3A1A GLY A 474 UNP Q9Y6K1 EXPRESSION TAG SEQADV 3A1A SER A 475 UNP Q9Y6K1 EXPRESSION TAG SEQRES 1 A 144 GLY PRO LEU GLY SER ARG GLU ARG LEU VAL TYR GLU VAL SEQRES 2 A 144 ARG GLN LYS CYS ARG ASN ILE GLU ASP ILE CYS ILE SER SEQRES 3 A 144 CYS GLY SER LEU ASN VAL THR LEU GLU HIS PRO LEU PHE SEQRES 4 A 144 VAL GLY GLY MET CYS GLN ASN CYS LYS ASN CYS PHE LEU SEQRES 5 A 144 GLU CYS ALA TYR GLN TYR ASP ASP ASP GLY TYR GLN SER SEQRES 6 A 144 TYR CYS THR ILE CYS CYS GLY GLY ARG GLU VAL LEU MET SEQRES 7 A 144 CYS GLY ASN ASN ASN CYS CYS ARG CYS PHE CYS VAL GLU SEQRES 8 A 144 CYS VAL ASP LEU LEU VAL GLY PRO GLY ALA ALA GLN ALA SEQRES 9 A 144 ALA ILE LYS GLU ASP PRO TRP ASN CYS TYR MET CYS GLY SEQRES 10 A 144 HIS LYS GLY THR TYR GLY LEU LEU ARG ARG ARG GLU ASP SEQRES 11 A 144 TRP PRO SER ARG LEU GLN MET PHE PHE ALA ASN ASN HIS SEQRES 12 A 144 ASP HET ZN A 1 1 HET ZN A 2 1 HET ZN A 3 1 HET EDO A 4 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 3(ZN 2+) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *17(H2 O) HELIX 1 1 GLY A 474 GLN A 485 1 12 HELIX 2 2 ASN A 489 ILE A 493 5 5 HELIX 3 3 CYS A 514 ALA A 525 1 12 HELIX 4 4 VAL A 560 VAL A 567 1 8 HELIX 5 5 GLY A 570 ILE A 576 1 7 HELIX 6 6 ASP A 600 PHE A 609 1 10 SHEET 1 A 2 LEU A 504 GLU A 505 0 SHEET 2 A 2 GLY A 512 MET A 513 -1 O MET A 513 N LEU A 504 SHEET 1 B 2 VAL A 546 MET A 548 0 SHEET 2 B 2 CYS A 557 CYS A 559 -1 O PHE A 558 N LEU A 547 SHEET 1 C 2 THR A 591 TYR A 592 0 SHEET 2 C 2 LEU A 595 ARG A 596 -1 O LEU A 595 N TYR A 592 LINK ZN ZN A 1 SG CYS A 494 1555 1555 2.31 LINK ZN ZN A 1 SG CYS A 497 1555 1555 2.16 LINK ZN ZN A 1 SG CYS A 514 1555 1555 2.47 LINK ZN ZN A 1 SG CYS A 517 1555 1555 2.27 LINK ZN ZN A 2 SG CYS A 537 1555 1555 2.33 LINK ZN ZN A 2 SG CYS A 540 1555 1555 2.29 LINK ZN ZN A 2 SG CYS A 559 1555 1555 2.34 LINK ZN ZN A 2 SG CYS A 562 1555 1555 2.23 LINK ZN ZN A 3 SG CYS A 549 1555 1555 2.23 LINK ZN ZN A 3 SG CYS A 554 1555 1555 2.43 LINK ZN ZN A 3 SG CYS A 583 1555 1555 2.23 LINK ZN ZN A 3 SG CYS A 586 1555 1555 2.39 SITE 1 AC1 4 CYS A 494 CYS A 497 CYS A 514 CYS A 517 SITE 1 AC2 4 CYS A 537 CYS A 540 CYS A 559 CYS A 562 SITE 1 AC3 4 CYS A 549 CYS A 554 CYS A 583 CYS A 586 SITE 1 AC4 7 HOH A 14 PHE A 521 CYS A 524 ALA A 525 SITE 2 AC4 7 TYR A 536 CYS A 537 CYS A 541 CRYST1 57.581 57.581 138.949 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017367 0.010027 0.000000 0.00000 SCALE2 0.000000 0.020053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007197 0.00000