PDB Short entry for 3A62 HEADER TRANSFERASE 18-AUG-09 3A62 TITLE CRYSTAL STRUCTURE OF PHOSPHORYLATED P70S6K1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE BETA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 75-399; COMPND 5 SYNONYM: RIBOSOMAL PROTEIN S6 KINASE I, S6K1, S6K, 70 KDA RIBOSOMAL COMPND 6 PROTEIN S6 KINASE 1, P70 S6 KINASE ALPHA, P70(S6K)-ALPHA, P70-S6K, COMPND 7 P70S6K, P70-ALPHA; COMPND 8 EC: 2.7.11.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULO VIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVL1392 KEYWDS KINASE, KINASE DOMAIN, INACTIVE, ACTIVE, RIBOSOMAL S6 KINASE, KEYWDS 2 ACTIVATION, ALTERNATIVE INITIATION, ATP-BINDING, CELL JUNCTION, KEYWDS 3 CYTOPLASM, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, POLYMORPHISM, KEYWDS 4 SERINE/THREONINE-PROTEIN KINASE, SYNAPSE, SYNAPTOSOME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SUNAMI,N.BYRNE,R.E.DIEHL,K.FUNABASHI,D.L.HALL,M.IKUTA,S.B.PATEL, AUTHOR 2 J.M.SHIPMAN,R.F.SMITH,I.TAKAHASHI,J.ZUGAY-MURPHY,Y.IWASAWA,K.J.LUMB, AUTHOR 3 S.K.MUNSHI,S.SHARMA REVDAT 3 01-NOV-23 3A62 1 REMARK SEQADV LINK REVDAT 2 02-MAR-10 3A62 1 JRNL REVDAT 1 27-OCT-09 3A62 0 JRNL AUTH T.SUNAMI,N.BYRNE,R.E.DIEHL,K.FUNABASHI,D.L.HALL,M.IKUTA, JRNL AUTH 2 S.B.PATEL,J.M.SHIPMAN,R.F.SMITH,I.TAKAHASHI,J.ZUGAY-MURPHY, JRNL AUTH 3 Y.IWASAWA,K.J.LUMB,S.K.MUNSHI,S.SHARMA JRNL TITL STRUCTURAL BASIS OF HUMAN P70 RIBOSOMAL S6 KINASE-1 JRNL TITL 2 REGULATION BY ACTIVATION LOOP PHOSPHORYLATION. JRNL REF J.BIOL.CHEM. V. 285 4587 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 19864428 JRNL DOI 10.1074/JBC.M109.040667 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1654444.860 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 13840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1401 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2400 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2360 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1527 REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : 0.0070 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 15020 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1745 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 197 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2117 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : 0.80000 REMARK 3 B33 (A**2) : -1.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.680 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.720 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.970 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.340 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.410 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 44.24 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : STU.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : STU.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3A62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000028856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15108 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 29.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3A60 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 8.5, 3.5M SODIUM REMARK 280 FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.29450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.37100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.37100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.14725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.37100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.37100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.44175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.37100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.37100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.14725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.37100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.37100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.44175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.29450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 SER A 75 REMARK 465 GLU A 76 REMARK 465 THR A 77 REMARK 465 SER A 78 REMARK 465 VAL A 79 REMARK 465 ASN A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 GLU A 84 REMARK 465 ALA A 128 REMARK 465 MET A 129 REMARK 465 ILE A 130 REMARK 465 VAL A 131 REMARK 465 ARG A 132 REMARK 465 ASN A 133 REMARK 465 ALA A 134 REMARK 465 LYS A 135 REMARK 465 ASP A 136 REMARK 465 THR A 137 REMARK 465 ALA A 138 REMARK 465 HIS A 139 REMARK 465 THR A 140 REMARK 465 LYS A 141 REMARK 465 LYS A 241 REMARK 465 GLU A 242 REMARK 465 SER A 243 REMARK 465 ILE A 244 REMARK 465 HIS A 245 REMARK 465 ASP A 246 REMARK 465 GLY A 247 REMARK 465 THR A 248 REMARK 465 VAL A 249 REMARK 465 THR A 250 REMARK 465 LEU A 373 REMARK 465 GLN A 374 REMARK 465 SER A 375 REMARK 465 GLU A 376 REMARK 465 GLU A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 379 REMARK 465 SER A 380 REMARK 465 GLN A 381 REMARK 465 PHE A 382 REMARK 465 ASP A 383 REMARK 465 SER A 384 REMARK 465 LYS A 385 REMARK 465 PHE A 386 REMARK 465 THR A 387 REMARK 465 ARG A 388 REMARK 465 GLN A 389 REMARK 465 THR A 390 REMARK 465 PRO A 391 REMARK 465 VAL A 392 REMARK 465 ASP A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 ASP A 396 REMARK 465 ASP A 397 REMARK 465 SER A 398 REMARK 465 THR A 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 159 -62.48 -102.76 REMARK 500 ARG A 217 -47.21 69.43 REMARK 500 THR A 235 -32.54 -137.83 REMARK 500 ARG A 267 95.36 -59.52 REMARK 500 ASN A 271 -155.88 -136.60 REMARK 500 ASP A 342 -120.35 42.98 REMARK 500 PHE A 352 59.72 -103.06 REMARK 500 PRO A 371 83.42 -61.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 38 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 240 SG REMARK 620 2 HIS A 251 ND1 97.2 REMARK 620 3 CYS A 254 SG 116.2 109.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STU A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 38 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A60 RELATED DB: PDB REMARK 900 RELATED ID: 3A61 RELATED DB: PDB DBREF 3A62 A 75 399 UNP P23443 KS6B1_HUMAN 75 399 SEQADV 3A62 GLY A 73 UNP P23443 EXPRESSION TAG SEQADV 3A62 SER A 74 UNP P23443 EXPRESSION TAG SEQRES 1 A 327 GLY SER SER GLU THR SER VAL ASN ARG GLY PRO GLU LYS SEQRES 2 A 327 ILE ARG PRO GLU CYS PHE GLU LEU LEU ARG VAL LEU GLY SEQRES 3 A 327 LYS GLY GLY TYR GLY LYS VAL PHE GLN VAL ARG LYS VAL SEQRES 4 A 327 THR GLY ALA ASN THR GLY LYS ILE PHE ALA MET LYS VAL SEQRES 5 A 327 LEU LYS LYS ALA MET ILE VAL ARG ASN ALA LYS ASP THR SEQRES 6 A 327 ALA HIS THR LYS ALA GLU ARG ASN ILE LEU GLU GLU VAL SEQRES 7 A 327 LYS HIS PRO PHE ILE VAL ASP LEU ILE TYR ALA PHE GLN SEQRES 8 A 327 THR GLY GLY LYS LEU TYR LEU ILE LEU GLU TYR LEU SER SEQRES 9 A 327 GLY GLY GLU LEU PHE MET GLN LEU GLU ARG GLU GLY ILE SEQRES 10 A 327 PHE MET GLU ASP THR ALA CYS PHE TYR LEU ALA GLU ILE SEQRES 11 A 327 SER MET ALA LEU GLY HIS LEU HIS GLN LYS GLY ILE ILE SEQRES 12 A 327 TYR ARG ASP LEU LYS PRO GLU ASN ILE MET LEU ASN HIS SEQRES 13 A 327 GLN GLY HIS VAL LYS LEU THR ASP PHE GLY LEU CYS LYS SEQRES 14 A 327 GLU SER ILE HIS ASP GLY THR VAL THR HIS TPO PHE CYS SEQRES 15 A 327 GLY THR ILE GLU TYR MET ALA PRO GLU ILE LEU MET ARG SEQRES 16 A 327 SER GLY HIS ASN ARG ALA VAL ASP TRP TRP SER LEU GLY SEQRES 17 A 327 ALA LEU MET TYR ASP MET LEU THR GLY ALA PRO PRO PHE SEQRES 18 A 327 THR GLY GLU ASN ARG LYS LYS THR ILE ASP LYS ILE LEU SEQRES 19 A 327 LYS CYS LYS LEU ASN LEU PRO PRO TYR LEU THR GLN GLU SEQRES 20 A 327 ALA ARG ASP LEU LEU LYS LYS LEU LEU LYS ARG ASN ALA SEQRES 21 A 327 ALA SER ARG LEU GLY ALA GLY PRO GLY ASP ALA GLY GLU SEQRES 22 A 327 VAL GLN ALA HIS PRO PHE PHE ARG HIS ILE ASN TRP GLU SEQRES 23 A 327 GLU LEU LEU ALA ARG LYS VAL GLU PRO PRO PHE LYS PRO SEQRES 24 A 327 LEU LEU GLN SER GLU GLU ASP VAL SER GLN PHE ASP SER SEQRES 25 A 327 LYS PHE THR ARG GLN THR PRO VAL ASP SER PRO ASP ASP SEQRES 26 A 327 SER THR MODRES 3A62 TPO A 252 THR PHOSPHOTHREONINE HET TPO A 252 11 HET STU A 400 35 HET MN A 38 1 HETNAM TPO PHOSPHOTHREONINE HETNAM STU STAUROSPORINE HETNAM MN MANGANESE (II) ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 STU C28 H26 N4 O3 FORMUL 3 MN MN 2+ FORMUL 4 HOH *37(H2 O) HELIX 1 1 ARG A 87 GLU A 89 5 3 HELIX 2 2 ALA A 142 VAL A 150 1 9 HELIX 3 3 LEU A 180 GLY A 188 1 9 HELIX 4 4 MET A 191 LYS A 212 1 22 HELIX 5 5 ALA A 261 MET A 266 1 6 HELIX 6 6 ARG A 272 GLY A 289 1 18 HELIX 7 7 ASN A 297 CYS A 308 1 12 HELIX 8 8 THR A 317 LEU A 328 1 12 HELIX 9 9 ASN A 331 ARG A 335 5 5 HELIX 10 10 ASP A 342 HIS A 349 1 8 HELIX 11 11 PRO A 350 ARG A 353 5 4 HELIX 12 12 ASN A 356 ALA A 362 1 7 SHEET 1 A 5 PHE A 91 GLY A 100 0 SHEET 2 A 5 GLY A 103 LYS A 110 -1 O VAL A 105 N LEU A 97 SHEET 3 A 5 ILE A 119 LEU A 125 -1 O VAL A 124 N LYS A 104 SHEET 4 A 5 LEU A 168 GLU A 173 -1 O LEU A 172 N ALA A 121 SHEET 5 A 5 LEU A 158 GLN A 163 -1 N ILE A 159 O ILE A 171 SHEET 1 B 3 GLY A 178 GLU A 179 0 SHEET 2 B 3 ILE A 224 LEU A 226 -1 O LEU A 226 N GLY A 178 SHEET 3 B 3 VAL A 232 LEU A 234 -1 O LYS A 233 N MET A 225 LINK C HIS A 251 N TPO A 252 1555 1555 1.33 LINK C TPO A 252 N PHE A 253 1555 1555 1.33 LINK MN MN A 38 SG CYS A 240 1555 1555 2.27 LINK MN MN A 38 ND1 HIS A 251 1555 1555 1.96 LINK MN MN A 38 SG CYS A 254 1555 1555 2.22 SITE 1 AC1 12 LEU A 97 GLY A 98 LYS A 99 VAL A 105 SITE 2 AC1 12 ALA A 121 GLU A 173 TYR A 174 LEU A 175 SITE 3 AC1 12 GLU A 179 GLU A 222 MET A 225 THR A 235 SITE 1 AC2 4 HOH A 37 CYS A 240 HIS A 251 CYS A 254 CRYST1 68.742 68.742 144.589 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006916 0.00000