PDB Short entry for 3A8N HEADER SIGNALING PROTEIN 07-OCT-09 3A8N TITLE CRYSTAL STRUCTURE OF THE TIAM1 PHCCEX DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-LYMPHOMA INVASION AND METASTASIS-INDUCING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHCCEX DOMAIN, RESIDUES 429-702; COMPND 5 SYNONYM: TIAM-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TIAM1, TIAM-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P-3 KEYWDS GUANINE NUCLEOTIDE EXCHANGE FACTOR, GUANINE-NUCLEOTIDE RELEASING KEYWDS 2 FACTOR, LIPOPROTEIN, MYRISTATE, PHOSPHOPROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.TERAWAKI,K.KITANO,T.MORI,Y.ZHAI,Y.HIGUCHI,N.ITOH,T.WATANABE, AUTHOR 2 K.KAIBUCHI,T.HAKOSHIMA REVDAT 3 01-NOV-23 3A8N 1 SEQADV REVDAT 2 19-JAN-10 3A8N 1 JRNL REVDAT 1 24-NOV-09 3A8N 0 JRNL AUTH S.TERAWAKI,K.KITANO,T.MORI,Y.ZHAI,Y.HIGUCHI,N.ITOH, JRNL AUTH 2 T.WATANABE,K.KAIBUCHI,T.HAKOSHIMA JRNL TITL THE PHCCEX DOMAIN OF TIAM1/2 IS A NOVEL PROTEIN- AND JRNL TITL 2 MEMBRANE-BINDING MODULE JRNL REF EMBO J. V. 29 236 2010 JRNL REFN ISSN 0261-4189 JRNL PMID 19893486 JRNL DOI 10.1038/EMBOJ.2009.323 REMARK 2 REMARK 2 RESOLUTION. 4.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3875577.280 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 2814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.306 REMARK 3 FREE R VALUE : 0.396 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.300 REMARK 3 FREE R VALUE TEST SET COUNT : 262 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.024 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 391 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 46 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1142 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -35.35000 REMARK 3 B22 (A**2) : -35.35000 REMARK 3 B33 (A**2) : 70.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.76 REMARK 3 ESD FROM SIGMAA (A) : -0.1 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.65 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.25 REMARK 3 BSOL : 317.8 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3A8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000028949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2824 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3A8P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% JEFFAMINE M-600, 10MM FERRIC REMARK 280 CHLORIDE, 1.5% GLYCEROL, 100MM SODIUM CITRATE, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.94567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.89133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.94567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.89133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.94567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 75.89133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.94567 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.89133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 424 REMARK 465 PRO A 425 REMARK 465 LEU A 426 REMARK 465 GLY A 427 REMARK 465 SER A 428 REMARK 465 ALA A 429 REMARK 465 ALA A 430 REMARK 465 GLN A 431 REMARK 465 GLY A 432 REMARK 465 GLY A 481 REMARK 465 ARG A 482 REMARK 465 SER A 483 REMARK 465 GLY A 484 REMARK 465 ILE A 485 REMARK 465 ASP A 486 REMARK 465 HIS A 487 REMARK 465 ASN A 488 REMARK 465 GLY A 671 REMARK 465 GLU A 672 REMARK 465 ILE A 673 REMARK 465 GLY A 674 REMARK 465 VAL A 675 REMARK 465 ARG A 676 REMARK 465 ARG A 677 REMARK 465 ARG A 678 REMARK 465 THR A 679 REMARK 465 GLN A 680 REMARK 465 ALA A 681 REMARK 465 MET A 682 REMARK 465 SER A 683 REMARK 465 ARG A 684 REMARK 465 SER A 685 REMARK 465 ALA A 686 REMARK 465 SER A 687 REMARK 465 LYS A 688 REMARK 465 ARG A 689 REMARK 465 ARG A 690 REMARK 465 SER A 691 REMARK 465 ARG A 692 REMARK 465 PHE A 693 REMARK 465 SER A 694 REMARK 465 SER A 695 REMARK 465 LEU A 696 REMARK 465 TRP A 697 REMARK 465 GLY A 698 REMARK 465 LEU A 699 REMARK 465 ASP A 700 REMARK 465 THR A 701 REMARK 465 THR A 702 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 433 OG1 CG2 REMARK 470 VAL A 434 CG1 CG2 REMARK 470 ARG A 435 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 LEU A 440 CG CD1 CD2 REMARK 470 VAL A 442 CG1 CG2 REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 ASN A 444 CG OD1 ND2 REMARK 470 PHE A 445 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 446 CG CD1 CD2 REMARK 470 VAL A 447 CG1 CG2 REMARK 470 HIS A 448 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 449 CG CD CE NZ REMARK 470 LYS A 450 CG CD CE NZ REMARK 470 ASN A 451 CG OD1 ND2 REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 VAL A 454 CG1 CG2 REMARK 470 GLU A 455 CG CD OE1 OE2 REMARK 470 SER A 456 OG REMARK 470 THR A 458 OG1 CG2 REMARK 470 ARG A 459 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 460 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 461 CG CD CE NZ REMARK 470 TRP A 462 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 462 CZ3 CH2 REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 HIS A 464 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 465 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP A 466 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 466 CZ3 CH2 REMARK 470 VAL A 467 CG1 CG2 REMARK 470 SER A 468 OG REMARK 470 LEU A 469 CG CD1 CD2 REMARK 470 LYS A 470 CG CD CE NZ REMARK 470 CYS A 472 SG REMARK 470 THR A 473 OG1 CG2 REMARK 470 LEU A 474 CG CD1 CD2 REMARK 470 PHE A 475 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 476 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 477 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 478 CG CD OE1 OE2 REMARK 470 THR A 479 OG1 CG2 REMARK 470 ASP A 480 CG OD1 OD2 REMARK 470 SER A 489 OG REMARK 470 VAL A 490 CG1 CG2 REMARK 470 PRO A 491 CG CD REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 HIS A 493 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 495 CG1 CG2 REMARK 470 TRP A 496 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 496 CZ3 CH2 REMARK 470 VAL A 497 CG1 CG2 REMARK 470 GLU A 498 CG CD OE1 OE2 REMARK 470 ASN A 499 CG OD1 ND2 REMARK 470 SER A 500 OG REMARK 470 ILE A 501 CG1 CG2 CD1 REMARK 470 VAL A 502 CG1 CG2 REMARK 470 GLN A 503 CG CD OE1 NE2 REMARK 470 VAL A 505 CG1 CG2 REMARK 470 PRO A 506 CG CD REMARK 470 GLU A 507 CG CD OE1 OE2 REMARK 470 HIS A 508 CG ND1 CD2 CE1 NE2 REMARK 470 PRO A 509 CG CD REMARK 470 LYS A 510 CG CD CE NZ REMARK 470 LYS A 511 CG CD CE NZ REMARK 470 ASP A 512 CG OD1 OD2 REMARK 470 PHE A 513 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 514 CG1 CG2 REMARK 470 PHE A 515 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS A 516 SG REMARK 470 LEU A 517 CG CD1 CD2 REMARK 470 SER A 518 OG REMARK 470 ASN A 519 CG OD1 ND2 REMARK 470 SER A 520 OG REMARK 470 LEU A 521 CG CD1 CD2 REMARK 470 ASP A 523 CG OD1 OD2 REMARK 470 PHE A 525 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 526 CG CD1 CD2 REMARK 470 PHE A 527 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 528 CG CD OE1 NE2 REMARK 470 THR A 529 OG1 CG2 REMARK 470 THR A 530 OG1 CG2 REMARK 470 SER A 531 OG REMARK 470 GLN A 532 CG CD OE1 NE2 REMARK 470 THR A 533 OG1 CG2 REMARK 470 GLU A 534 CG CD OE1 OE2 REMARK 470 LEU A 535 CG CD1 CD2 REMARK 470 GLU A 536 CG CD OE1 OE2 REMARK 470 ASN A 537 CG OD1 ND2 REMARK 470 TRP A 538 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 538 CZ3 CH2 REMARK 470 ILE A 539 CG1 CG2 CD1 REMARK 470 THR A 540 OG1 CG2 REMARK 470 ILE A 542 CG1 CG2 CD1 REMARK 470 HIS A 543 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 544 OG REMARK 470 CYS A 546 SG REMARK 470 VAL A 550 CG1 CG2 REMARK 470 ARG A 552 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 553 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 554 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 555 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 556 CG CD CE NZ REMARK 470 GLU A 557 CG CD OE1 OE2 REMARK 470 ASP A 558 CG OD1 OD2 REMARK 470 THR A 559 OG1 CG2 REMARK 470 LEU A 560 CG CD1 CD2 REMARK 470 ARG A 561 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 562 CG CD1 CD2 REMARK 470 LEU A 563 CG CD1 CD2 REMARK 470 LYS A 564 CG CD CE NZ REMARK 470 SER A 565 OG REMARK 470 GLU A 566 CG CD OE1 OE2 REMARK 470 ILE A 567 CG1 CG2 CD1 REMARK 470 LYS A 568 CG CD CE NZ REMARK 470 LYS A 569 CG CD CE NZ REMARK 470 LEU A 570 CG CD1 CD2 REMARK 470 GLU A 571 CG CD OE1 OE2 REMARK 470 GLN A 572 CG CD OE1 NE2 REMARK 470 LYS A 573 CG CD CE NZ REMARK 470 ILE A 574 CG1 CG2 CD1 REMARK 470 ASP A 575 CG OD1 OD2 REMARK 470 MET A 576 CG SD CE REMARK 470 ASP A 577 CG OD1 OD2 REMARK 470 GLU A 578 CG CD OE1 OE2 REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 MET A 580 CG SD CE REMARK 470 LYS A 581 CG CD CE NZ REMARK 470 LYS A 582 CG CD CE NZ REMARK 470 MET A 583 CG SD CE REMARK 470 GLU A 585 CG CD OE1 OE2 REMARK 470 MET A 586 CG SD CE REMARK 470 GLN A 587 CG CD OE1 NE2 REMARK 470 LEU A 588 CG CD1 CD2 REMARK 470 SER A 589 OG REMARK 470 SER A 590 OG REMARK 470 VAL A 591 CG1 CG2 REMARK 470 THR A 592 OG1 CG2 REMARK 470 ASP A 593 CG OD1 OD2 REMARK 470 SER A 594 OG REMARK 470 LYS A 595 CG CD CE NZ REMARK 470 LYS A 596 CG CD CE NZ REMARK 470 LYS A 597 CG CD CE NZ REMARK 470 LYS A 598 CG CD CE NZ REMARK 470 THR A 599 OG1 CG2 REMARK 470 ILE A 600 CG1 CG2 CD1 REMARK 470 LEU A 601 CG CD1 CD2 REMARK 470 ASP A 602 CG OD1 OD2 REMARK 470 GLN A 603 CG CD OE1 NE2 REMARK 470 ILE A 604 CG1 CG2 CD1 REMARK 470 PHE A 605 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 606 CG1 CG2 REMARK 470 TRP A 607 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 607 CZ3 CH2 REMARK 470 GLU A 608 CG CD OE1 OE2 REMARK 470 GLN A 609 CG CD OE1 NE2 REMARK 470 ASN A 610 CG OD1 ND2 REMARK 470 LEU A 611 CG CD1 CD2 REMARK 470 GLU A 612 CG CD OE1 OE2 REMARK 470 GLN A 613 CG CD OE1 NE2 REMARK 470 PHE A 614 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 615 CG CD OE1 NE2 REMARK 470 MET A 616 CG SD CE REMARK 470 ASP A 617 CG OD1 OD2 REMARK 470 LEU A 618 CG CD1 CD2 REMARK 470 PHE A 619 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 620 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 621 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 622 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 623 SG REMARK 470 TYR A 624 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 625 CG CD1 CD2 REMARK 470 SER A 627 OG REMARK 470 LEU A 628 CG CD1 CD2 REMARK 470 GLN A 629 CG CD OE1 NE2 REMARK 470 GLU A 632 CG CD OE1 OE2 REMARK 470 LEU A 633 CG CD1 CD2 REMARK 470 PRO A 634 CG CD REMARK 470 ASN A 635 CG OD1 ND2 REMARK 470 PRO A 636 CG CD REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 ARG A 638 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 639 CG CD1 CD2 REMARK 470 LEU A 640 CG CD1 CD2 REMARK 470 PHE A 642 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 644 OG REMARK 470 ARG A 645 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 646 CG CD REMARK 470 THR A 647 OG1 CG2 REMARK 470 LYS A 648 CG CD CE NZ REMARK 470 VAL A 649 CG1 CG2 REMARK 470 MET A 651 CG SD CE REMARK 470 ARG A 653 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 654 CG CD1 CD2 REMARK 470 ILE A 656 CG1 CG2 CD1 REMARK 470 PHE A 657 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 658 OG REMARK 470 VAL A 659 CG1 CG2 REMARK 470 SER A 660 OG REMARK 470 SER A 661 OG REMARK 470 PHE A 662 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 663 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 665 CG CD1 CD2 REMARK 470 VAL A 666 CG1 CG2 REMARK 470 ARG A 669 CG CD NE CZ NH1 NH2 REMARK 470 THR A 670 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 541 N SER A 544 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 436 -165.64 -172.09 REMARK 500 ALA A 437 -179.81 167.68 REMARK 500 LEU A 446 138.74 156.04 REMARK 500 ASN A 451 37.51 79.49 REMARK 500 LYS A 452 86.27 46.88 REMARK 500 ALA A 457 171.04 -58.43 REMARK 500 ARG A 459 85.95 -48.72 REMARK 500 TRP A 462 121.37 -31.16 REMARK 500 TYR A 465 173.75 174.26 REMARK 500 VAL A 467 143.14 -172.65 REMARK 500 THR A 479 157.96 -35.35 REMARK 500 HIS A 493 134.94 158.57 REMARK 500 VAL A 495 101.88 -163.91 REMARK 500 VAL A 497 74.44 -61.67 REMARK 500 ASN A 499 -16.44 56.04 REMARK 500 SER A 500 171.15 -39.32 REMARK 500 VAL A 505 23.68 -145.00 REMARK 500 PRO A 506 -8.48 -44.43 REMARK 500 HIS A 508 158.66 -38.44 REMARK 500 PRO A 509 -121.12 -46.03 REMARK 500 LYS A 510 -76.32 -70.80 REMARK 500 LYS A 511 102.26 -38.58 REMARK 500 PHE A 513 105.49 56.42 REMARK 500 CYS A 516 113.80 -167.93 REMARK 500 SER A 520 -16.24 -46.97 REMARK 500 GLU A 536 -74.52 -65.68 REMARK 500 ASN A 537 -90.68 -28.61 REMARK 500 TRP A 538 -36.08 -35.55 REMARK 500 ALA A 541 -81.97 -74.15 REMARK 500 ALA A 548 -72.10 -60.07 REMARK 500 HIS A 555 56.22 29.44 REMARK 500 GLU A 557 -62.96 -90.97 REMARK 500 THR A 559 -71.33 -43.87 REMARK 500 LYS A 568 -86.20 -55.16 REMARK 500 LYS A 569 -34.63 -32.95 REMARK 500 ILE A 574 -83.82 -57.01 REMARK 500 GLN A 587 -51.38 -122.12 REMARK 500 ASP A 602 -79.28 -70.58 REMARK 500 GLN A 603 6.43 -57.03 REMARK 500 ILE A 604 -62.24 -104.67 REMARK 500 PHE A 605 -8.47 -59.54 REMARK 500 GLU A 612 -74.18 -36.14 REMARK 500 PHE A 619 -17.06 -48.72 REMARK 500 ARG A 620 -81.16 -82.59 REMARK 500 CYS A 623 9.06 -67.32 REMARK 500 GLU A 632 156.58 -44.71 REMARK 500 PRO A 634 -161.20 -65.51 REMARK 500 LEU A 639 -75.96 -50.27 REMARK 500 ALA A 641 -62.54 -21.76 REMARK 500 MET A 651 -7.23 -58.00 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A8P RELATED DB: PDB REMARK 900 TIAM2 PHCCEX DOMAIN REMARK 900 RELATED ID: 3A8Q RELATED DB: PDB REMARK 900 TIAM2 PHCCEX DOMAIN AT LOW RESOLUTION DBREF 3A8N A 429 702 UNP Q60610 TIAM1_MOUSE 429 702 SEQADV 3A8N GLY A 424 UNP Q60610 EXPRESSION TAG SEQADV 3A8N PRO A 425 UNP Q60610 EXPRESSION TAG SEQADV 3A8N LEU A 426 UNP Q60610 EXPRESSION TAG SEQADV 3A8N GLY A 427 UNP Q60610 EXPRESSION TAG SEQADV 3A8N SER A 428 UNP Q60610 EXPRESSION TAG SEQRES 1 A 279 GLY PRO LEU GLY SER ALA ALA GLN GLY THR VAL ARG LYS SEQRES 2 A 279 ALA GLY ALA LEU ALA VAL LYS ASN PHE LEU VAL HIS LYS SEQRES 3 A 279 LYS ASN LYS LYS VAL GLU SER ALA THR ARG ARG LYS TRP SEQRES 4 A 279 LYS HIS TYR TRP VAL SER LEU LYS GLY CYS THR LEU PHE SEQRES 5 A 279 PHE TYR GLU THR ASP GLY ARG SER GLY ILE ASP HIS ASN SEQRES 6 A 279 SER VAL PRO LYS HIS ALA VAL TRP VAL GLU ASN SER ILE SEQRES 7 A 279 VAL GLN ALA VAL PRO GLU HIS PRO LYS LYS ASP PHE VAL SEQRES 8 A 279 PHE CYS LEU SER ASN SER LEU GLY ASP ALA PHE LEU PHE SEQRES 9 A 279 GLN THR THR SER GLN THR GLU LEU GLU ASN TRP ILE THR SEQRES 10 A 279 ALA ILE HIS SER ALA CYS ALA ALA ALA VAL ALA ARG HIS SEQRES 11 A 279 HIS HIS LYS GLU ASP THR LEU ARG LEU LEU LYS SER GLU SEQRES 12 A 279 ILE LYS LYS LEU GLU GLN LYS ILE ASP MET ASP GLU LYS SEQRES 13 A 279 MET LYS LYS MET GLY GLU MET GLN LEU SER SER VAL THR SEQRES 14 A 279 ASP SER LYS LYS LYS LYS THR ILE LEU ASP GLN ILE PHE SEQRES 15 A 279 VAL TRP GLU GLN ASN LEU GLU GLN PHE GLN MET ASP LEU SEQRES 16 A 279 PHE ARG PHE ARG CYS TYR LEU ALA SER LEU GLN GLY GLY SEQRES 17 A 279 GLU LEU PRO ASN PRO LYS ARG LEU LEU ALA PHE ALA SER SEQRES 18 A 279 ARG PRO THR LYS VAL ALA MET GLY ARG LEU GLY ILE PHE SEQRES 19 A 279 SER VAL SER SER PHE HIS ALA LEU VAL ALA ALA ARG THR SEQRES 20 A 279 GLY GLU ILE GLY VAL ARG ARG ARG THR GLN ALA MET SER SEQRES 21 A 279 ARG SER ALA SER LYS ARG ARG SER ARG PHE SER SER LEU SEQRES 22 A 279 TRP GLY LEU ASP THR THR HELIX 1 1 SER A 531 HIS A 554 1 24 HELIX 2 2 ASP A 558 LYS A 581 1 24 HELIX 3 3 LYS A 581 SER A 589 1 9 HELIX 4 4 ASP A 593 LYS A 597 5 5 HELIX 5 5 THR A 599 LEU A 625 1 27 HELIX 6 6 ASN A 635 PHE A 642 1 8 HELIX 7 7 SER A 644 MET A 651 1 8 HELIX 8 8 SER A 660 LEU A 665 1 6 SHEET 1 A 4 LYS A 453 GLU A 455 0 SHEET 2 A 4 ALA A 437 LYS A 449 -1 N VAL A 447 O GLU A 455 SHEET 3 A 4 LYS A 463 LYS A 470 -1 O LYS A 463 N VAL A 442 SHEET 4 A 4 THR A 473 LEU A 474 -1 O THR A 473 N LYS A 470 SHEET 1 B 5 LYS A 453 GLU A 455 0 SHEET 2 B 5 ALA A 437 LYS A 449 -1 N VAL A 447 O GLU A 455 SHEET 3 B 5 ASP A 523 LEU A 526 -1 O ALA A 524 N LEU A 446 SHEET 4 B 5 LEU A 517 ASN A 519 -1 N ASN A 519 O ASP A 523 SHEET 5 B 5 ILE A 501 VAL A 502 -1 N ILE A 501 O SER A 518 CRYST1 113.470 113.470 113.837 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008813 0.005088 0.000000 0.00000 SCALE2 0.000000 0.010176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008784 0.00000