PDB Short entry for 3A9L HEADER HYDROLASE 30-OCT-09 3A9L TITLE STRUCTURE OF BACTERIOPHAGE POLY-GAMMA-GLUTAMATE HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY-GAMMA-GLUTAMATE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PHINIT1; SOURCE 3 ORGANISM_TAXID: 207656; SOURCE 4 GENE: PGHP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNAG443 KEYWDS ZINC ION BINDING, OPEN ALPHA/BETA MIXED CORE STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.FUJIMOTO,K.KIMURA REVDAT 3 13-MAR-24 3A9L 1 REMARK SEQADV LINK REVDAT 2 29-FEB-12 3A9L 1 JRNL VERSN REVDAT 1 10-NOV-10 3A9L 0 JRNL AUTH Z.FUJIMOTO,K.KIMURA JRNL TITL CRYSTAL STRUCTURE OF BACTERIOPHAGE PHINIT1 ZINC PEPTIDASE JRNL TITL 2 PGHP THAT HYDROLYZES GAMMA-GLUTAMYL LINKAGE OF BACTERIAL JRNL TITL 3 POLY-GAMMA-GLUTAMATE JRNL REF PROTEINS V. 80 722 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22105902 JRNL DOI 10.1002/PROT.23229 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.FUJIMOTO,I.SHIGA,Y.ITOH,K.KIMURA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 POLY-GAMMA-GLUTAMATE HYDROLASE FROM BACTERIOPHAGE PHINIT1 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 913 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19724131 REMARK 1 DOI 10.1107/S1744309109029881 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.KIMURA,Y.ITOH REMARK 1 TITL CHARACTERIZATION OF POLY-GAMMA-GLUTAMATE HYDROLASE ENCODED REMARK 1 TITL 2 BY A BACTERIOPHAGE GENOME: POSSIBLE ROLE IN PHAGE INFECTION REMARK 1 TITL 3 OF BACILLUS SUBTILIS ENCAPSULATED WITH POLY-GAMMA-GLUTAMATE REMARK 1 REF APPL.ENVIRON.MICROBIOL. V. 69 2491 2003 REMARK 1 REFN ISSN 0099-2240 REMARK 1 PMID 12732513 REMARK 1 DOI 10.1128/AEM.69.5.2491-2497.2003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 46421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.283 REMARK 3 R VALUE (WORKING SET) : 0.281 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2473 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.177 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.878 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3286 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4458 ; 1.550 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 6.826 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;39.102 ;24.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;14.991 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2530 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2048 ; 0.750 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3290 ; 1.181 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1238 ; 2.095 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1168 ; 3.016 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000028983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56281 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40%(V/V) PEG 300, 5%(W/V) PEG 1000, REMARK 280 0.1M TRIS BUFFER PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.74400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.37200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 7 O HOH B 235 1.69 REMARK 500 O HOH B 323 O HOH B 326 2.02 REMARK 500 O PRO B 71 O HOH B 321 2.05 REMARK 500 CZ TYR B 7 O HOH B 235 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 30 9.82 -152.88 REMARK 500 ASP A 107 95.00 -165.37 REMARK 500 THR A 141 -67.32 -135.75 REMARK 500 ASN A 177 7.58 82.47 REMARK 500 GLN B 30 11.69 -147.15 REMARK 500 ILE B 44 -71.23 -64.32 REMARK 500 THR B 141 -34.95 -136.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 251 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 ND1 REMARK 620 2 GLU A 45 OE1 105.1 REMARK 620 3 GLU A 45 OE2 89.4 54.6 REMARK 620 4 HIS A 103 ND1 98.1 103.6 158.2 REMARK 620 5 PO4 A 261 O4 88.0 143.3 92.3 108.3 REMARK 620 6 HOH A 294 O 156.0 89.1 83.2 97.1 69.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 251 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 40 ND1 REMARK 620 2 GLU B 45 OE1 97.8 REMARK 620 3 GLU B 45 OE2 87.0 62.3 REMARK 620 4 HIS B 103 ND1 100.0 102.8 164.5 REMARK 620 5 HOH B 259 O 155.7 100.3 87.3 91.5 REMARK 620 6 PO4 B 261 O4 86.9 149.0 87.6 106.5 69.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 261 DBREF 3A9L A 1 208 UNP Q852V1 Q852V1_9VIRU 1 208 DBREF 3A9L B 1 208 UNP Q852V1 Q852V1_9VIRU 1 208 SEQADV 3A9L LEU A 209 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L GLU A 210 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS A 211 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS A 212 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS A 213 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS A 214 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS A 215 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS A 216 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L LEU B 209 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L GLU B 210 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS B 211 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS B 212 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS B 213 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS B 214 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS B 215 UNP Q852V1 EXPRESSION TAG SEQADV 3A9L HIS B 216 UNP Q852V1 EXPRESSION TAG SEQRES 1 A 216 MET ALA GLN THR ASP THR TYR PRO ASN ILE GLU ALA LEU SEQRES 2 A 216 GLU ASN ALA GLU THR VAL GLY VAL ALA TYR ASN ILE GLU SEQRES 3 A 216 VAL LYS ARG GLN ASN PRO SER MET ILE TYR PHE SER PRO SEQRES 4 A 216 HIS ALA GLY GLY ILE GLU VAL GLY THR THR GLU LEU ILE SEQRES 5 A 216 TYR ARG VAL VAL GLU LEU THR GLY GLY SER LEU TYR LEU SEQRES 6 A 216 PHE GLN GLY LEU LEU PRO SER GLY ASN SER ARG LEU HIS SEQRES 7 A 216 VAL THR SER THR HIS PHE ASP GLU PRO MET ALA VAL CYS SEQRES 8 A 216 MET LEU SER LYS HIS THR ASP ALA VAL SER PHE HIS GLY SEQRES 9 A 216 TYR LYS ASP ASP TYR ASN LYS ASN THR LEU VAL GLY GLY SEQRES 10 A 216 LEU ASN THR GLU LEU ARG ASN LEU ILE VAL SER LYS LEU SEQRES 11 A 216 ASN SER LYS GLY ILE ALA ALA GLU VAL ALA THR ASP ARG SEQRES 12 A 216 PHE THR ALA THR ASP PRO ASP ASN ILE VAL ASN ARG CYS SEQRES 13 A 216 ALA SER GLY LYS GLY VAL GLN LEU GLU ILE SER SER ALA SEQRES 14 A 216 GLN ARG ARG ALA PHE PHE GLN ASN ASN ASP TRP SER LYS SEQRES 15 A 216 ALA ASN ARG GLY ASN VAL THR GLN GLU PHE LEU ASP TYR SEQRES 16 A 216 ALA GLU ALA ILE LYS GLU ALA GLU ALA GLU TYR TYR GLY SEQRES 17 A 216 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 216 MET ALA GLN THR ASP THR TYR PRO ASN ILE GLU ALA LEU SEQRES 2 B 216 GLU ASN ALA GLU THR VAL GLY VAL ALA TYR ASN ILE GLU SEQRES 3 B 216 VAL LYS ARG GLN ASN PRO SER MET ILE TYR PHE SER PRO SEQRES 4 B 216 HIS ALA GLY GLY ILE GLU VAL GLY THR THR GLU LEU ILE SEQRES 5 B 216 TYR ARG VAL VAL GLU LEU THR GLY GLY SER LEU TYR LEU SEQRES 6 B 216 PHE GLN GLY LEU LEU PRO SER GLY ASN SER ARG LEU HIS SEQRES 7 B 216 VAL THR SER THR HIS PHE ASP GLU PRO MET ALA VAL CYS SEQRES 8 B 216 MET LEU SER LYS HIS THR ASP ALA VAL SER PHE HIS GLY SEQRES 9 B 216 TYR LYS ASP ASP TYR ASN LYS ASN THR LEU VAL GLY GLY SEQRES 10 B 216 LEU ASN THR GLU LEU ARG ASN LEU ILE VAL SER LYS LEU SEQRES 11 B 216 ASN SER LYS GLY ILE ALA ALA GLU VAL ALA THR ASP ARG SEQRES 12 B 216 PHE THR ALA THR ASP PRO ASP ASN ILE VAL ASN ARG CYS SEQRES 13 B 216 ALA SER GLY LYS GLY VAL GLN LEU GLU ILE SER SER ALA SEQRES 14 B 216 GLN ARG ARG ALA PHE PHE GLN ASN ASN ASP TRP SER LYS SEQRES 15 B 216 ALA ASN ARG GLY ASN VAL THR GLN GLU PHE LEU ASP TYR SEQRES 16 B 216 ALA GLU ALA ILE LYS GLU ALA GLU ALA GLU TYR TYR GLY SEQRES 17 B 216 LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 251 1 HET PO4 A 261 5 HET ZN B 251 1 HET PO4 B 261 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 7 HOH *227(H2 O) HELIX 1 1 ASN A 9 GLU A 17 1 9 HELIX 2 2 GLY A 47 GLY A 60 1 14 HELIX 3 3 GLY A 73 HIS A 78 5 6 HELIX 4 4 THR A 80 PHE A 84 5 5 HELIX 5 5 GLU A 86 LYS A 95 1 10 HELIX 6 6 ASN A 119 LYS A 133 1 15 HELIX 7 7 ASN A 151 CYS A 156 5 6 HELIX 8 8 SER A 168 PHE A 174 1 7 HELIX 9 9 PHE A 175 ASP A 179 5 5 HELIX 10 10 SER A 181 ARG A 185 5 5 HELIX 11 11 THR A 189 GLU A 210 1 22 HELIX 12 12 ASN B 9 GLU B 17 1 9 HELIX 13 13 GLY B 47 GLY B 60 1 14 HELIX 14 14 GLY B 73 HIS B 78 5 6 HELIX 15 15 THR B 80 PHE B 84 5 5 HELIX 16 16 GLU B 86 LYS B 95 1 10 HELIX 17 17 ASN B 119 LYS B 133 1 15 HELIX 18 18 ASN B 151 CYS B 156 5 6 HELIX 19 19 SER B 168 ALA B 173 1 6 HELIX 20 20 PHE B 174 ASP B 179 5 6 HELIX 21 21 SER B 181 ARG B 185 5 5 HELIX 22 22 THR B 189 GLY B 208 1 20 SHEET 1 A14 GLU A 138 VAL A 139 0 SHEET 2 A14 THR A 113 GLY A 116 1 N VAL A 115 O GLU A 138 SHEET 3 A14 VAL A 162 SER A 167 -1 O GLN A 163 N GLY A 116 SHEET 4 A14 ASP A 98 TYR A 105 1 N HIS A 103 O ILE A 166 SHEET 5 A14 MET A 34 GLY A 42 1 N ILE A 35 O VAL A 100 SHEET 6 A14 SER A 62 GLY A 68 1 O SER A 62 N TYR A 36 SHEET 7 A14 TYR A 23 ARG A 29 -1 N ASN A 24 O GLN A 67 SHEET 8 A14 TYR B 23 ARG B 29 -1 O ARG B 29 N ILE A 25 SHEET 9 A14 SER B 62 GLY B 68 -1 O LEU B 63 N LYS B 28 SHEET 10 A14 MET B 34 GLY B 42 1 N MET B 34 O SER B 62 SHEET 11 A14 ASP B 98 TYR B 105 1 O VAL B 100 N ILE B 35 SHEET 12 A14 VAL B 162 SER B 167 1 O LEU B 164 N HIS B 103 SHEET 13 A14 THR B 113 GLY B 116 -1 N LEU B 114 O GLU B 165 SHEET 14 A14 GLU B 138 VAL B 139 1 O GLU B 138 N VAL B 115 LINK ND1 HIS A 40 ZN ZN A 251 1555 1555 2.19 LINK OE1 GLU A 45 ZN ZN A 251 1555 1555 2.31 LINK OE2 GLU A 45 ZN ZN A 251 1555 1555 2.48 LINK ND1 HIS A 103 ZN ZN A 251 1555 1555 2.10 LINK ZN ZN A 251 O4 PO4 A 261 1555 1555 2.36 LINK ZN ZN A 251 O HOH A 294 1555 1555 2.28 LINK ND1 HIS B 40 ZN ZN B 251 1555 1555 2.09 LINK OE1 GLU B 45 ZN ZN B 251 1555 1555 2.04 LINK OE2 GLU B 45 ZN ZN B 251 1555 1555 2.24 LINK ND1 HIS B 103 ZN ZN B 251 1555 1555 2.23 LINK ZN ZN B 251 O HOH B 259 1555 1555 2.29 LINK ZN ZN B 251 O4 PO4 B 261 1555 1555 2.62 SITE 1 AC1 5 HIS A 40 GLU A 45 HIS A 103 PO4 A 261 SITE 2 AC1 5 HOH A 294 SITE 1 AC2 10 HIS A 40 GLU A 45 HIS A 78 THR A 80 SITE 2 AC2 10 SER A 81 HIS A 103 GLU A 165 ZN A 251 SITE 3 AC2 10 HOH A 294 HOH A 302 SITE 1 AC3 5 HIS B 40 GLU B 45 HIS B 103 HOH B 259 SITE 2 AC3 5 PO4 B 261 SITE 1 AC4 9 HIS B 40 GLU B 45 HIS B 78 THR B 80 SITE 2 AC4 9 SER B 81 HIS B 103 GLU B 165 ZN B 251 SITE 3 AC4 9 HOH B 259 CRYST1 86.809 86.809 85.116 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011520 0.006651 0.000000 0.00000 SCALE2 0.000000 0.013302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011749 0.00000