PDB Short entry for 3AA6 HEADER PROTEIN BINDING 11-NOV-09 3AA6 TITLE CRYSTAL STRUCTURE OF ACTIN CAPPING PROTEIN IN COMPLEX WITH THE CP- TITLE 2 BINDING MOTIF DERIVED FROM CD2AP COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAPZ 36/32, BETA-ACTININ SUBUNIT I; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: F-ACTIN-CAPPING PROTEIN SUBUNIT BETA ISOFORMS 1 AND 2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CAPZ B1 AND B2, CAPZ 36/32, BETA-ACTININ SUBUNIT II; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 OTHER_DETAILS: BETA TENTACLE DELETION; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 23MER PEPTIDE FROM CD2-ASSOCIATED PROTEIN; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: RECIDUES 485-507; COMPND 17 SYNONYM: CD2AP, CAS LIGAND WITH MULTIPLE SH3 DOMAINS, ADAPTER PROTEIN COMPND 18 CMS; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: CAPZA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 13 ORGANISM_COMMON: CHICKEN; SOURCE 14 ORGANISM_TAXID: 9031; SOURCE 15 GENE: CAPZB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETDUET1; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. KEYWDS ACTIN CAPPING PROTEIN, BARBED END REGULATION, CARMIL FAMILY PROTEIN, KEYWDS 2 CONFORMATIONAL CHANGE, CELL MOTILITY, CD2AP, ACTIN CAPPING, ACTIN- KEYWDS 3 BINDING, CYTOSKELETON, CELL CYCLE, CELL DIVISION, CELL PROJECTION, KEYWDS 4 MITOSIS, SH3 DOMAIN, SH3-BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.TAKEDA,S.MINAKATA,A.NARITA,M.KITAZAWA,T.YAMAKUNI,Y.MAEDA,Y.NITANAI REVDAT 2 01-NOV-23 3AA6 1 REMARK LINK REVDAT 1 04-AUG-10 3AA6 0 JRNL AUTH S.TAKEDA,S.MINAKATA,R.KOIKE,I.KAWAHATA,A.NARITA,M.KITAZAWA, JRNL AUTH 2 M.OTA,T.YAMAKUNI,Y.MAEDA,Y.NITANAI JRNL TITL TWO DISTINCT MECHANISMS FOR ACTIN CAPPING PROTEIN JRNL TITL 2 REGULATION--STERIC AND ALLOSTERIC INHIBITION JRNL REF PLOS BIOL. V. 8 00416 2010 JRNL REFN ISSN 1544-9173 JRNL PMID 20625546 JRNL DOI 10.1371/JOURNAL.PBIO.1000416 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 39034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 411 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.77000 REMARK 3 B33 (A**2) : 1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4520 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6150 ; 1.505 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 577 ; 5.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;37.306 ;24.526 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 820 ;14.538 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.417 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 669 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3495 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2737 ; 1.051 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4454 ; 1.923 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1783 ; 2.835 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1672 ; 4.695 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000029004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1IZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 400, 20MM BACL2, 100MM MES REMARK 280 -NAOH, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K, REMARK 280 PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.55950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.54450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.93550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.54450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.55950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.93550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ORIGOMETRIC STATE OF THE ACTIN CAPPING PROTEIN IS A REMARK 300 HETERO DIMER COMPOSE OF SUBUNIT A (CHAIN A) AND SUBUNIT B (CHAIN B) REMARK 300 IN VIVO AND IN VITRO. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 PHE A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 TYR A 277 REMARK 465 LYS A 278 REMARK 465 ILE A 279 REMARK 465 GLY A 280 REMARK 465 LYS A 281 REMARK 465 GLU A 282 REMARK 465 MET A 283 REMARK 465 GLN A 284 REMARK 465 ASN A 285 REMARK 465 ALA A 286 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 216 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 82.09 -168.70 REMARK 500 ASP A 72 -174.79 61.20 REMARK 500 THR A 113 -89.92 -127.86 REMARK 500 TYR A 199 21.86 -141.97 REMARK 500 SER A 215 119.98 -160.52 REMARK 500 SER A 219 -105.72 -137.69 REMARK 500 THR A 253 -72.29 -102.32 REMARK 500 ASP B 85 38.36 -143.86 REMARK 500 ASN C 506 -96.40 75.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 245 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 38 OD1 REMARK 620 2 ASP B 38 OD2 39.4 REMARK 620 3 HOH B 373 O 86.1 83.3 REMARK 620 4 HOH B 399 O 83.8 67.4 144.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA B 245 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IZN RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO-FORM REMARK 900 RELATED ID: 3AA0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEXED WITH THE 21 AA LENGTH CARMIL FRAGMENT REMARK 900 RELATED ID: 3AA1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEXED WITH THE 23 AA LENGTH CKIP-1 FRAGMENT REMARK 900 RELATED ID: 3AA7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO-FORM REMARK 900 RELATED ID: 3AAA RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEXED WITH V-1 REMARK 900 RELATED ID: 3AAE RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEXED WITH THE 32 AA LENGTH CARMIL FRAGMENT DBREF 3AA6 A 1 286 UNP P13127 CAZA1_CHICK 1 286 DBREF 3AA6 B 1 244 UNP P14315 CAPZB_CHICK 1 244 DBREF 3AA6 C 485 507 UNP Q9Y5K6 CD2AP_HUMAN 485 507 SEQRES 1 A 286 MET ALA ASP PHE GLU ASP ARG VAL SER ASP GLU GLU LYS SEQRES 2 A 286 VAL ARG ILE ALA ALA LYS PHE ILE THR HIS ALA PRO PRO SEQRES 3 A 286 GLY GLU PHE ASN GLU VAL PHE ASN ASP VAL ARG LEU LEU SEQRES 4 A 286 LEU ASN ASN ASP ASN LEU LEU ARG GLU GLY ALA ALA HIS SEQRES 5 A 286 ALA PHE ALA GLN TYR ASN MET ASP GLN PHE THR PRO VAL SEQRES 6 A 286 LYS ILE GLU GLY TYR ASP ASP GLN VAL LEU ILE THR GLU SEQRES 7 A 286 HIS GLY ASP LEU GLY ASN GLY ARG PHE LEU ASP PRO ARG SEQRES 8 A 286 ASN LYS ILE SER PHE LYS PHE ASP HIS LEU ARG LYS GLU SEQRES 9 A 286 ALA SER ASP PRO GLN PRO GLU ASP THR GLU SER ALA LEU SEQRES 10 A 286 LYS GLN TRP ARG ASP ALA CYS ASP SER ALA LEU ARG ALA SEQRES 11 A 286 TYR VAL LYS ASP HIS TYR PRO ASN GLY PHE CYS THR VAL SEQRES 12 A 286 TYR GLY LYS SER ILE ASP GLY GLN GLN THR ILE ILE ALA SEQRES 13 A 286 CYS ILE GLU SER HIS GLN PHE GLN PRO LYS ASN PHE TRP SEQRES 14 A 286 ASN GLY ARG TRP ARG SER GLU TRP LYS PHE THR ILE THR SEQRES 15 A 286 PRO PRO THR ALA GLN VAL ALA ALA VAL LEU LYS ILE GLN SEQRES 16 A 286 VAL HIS TYR TYR GLU ASP GLY ASN VAL GLN LEU VAL SER SEQRES 17 A 286 HIS LYS ASP ILE GLN ASP SER VAL GLN VAL SER SER ASP SEQRES 18 A 286 VAL GLN THR ALA LYS GLU PHE ILE LYS ILE ILE GLU ASN SEQRES 19 A 286 ALA GLU ASN GLU TYR GLN THR ALA ILE SER GLU ASN TYR SEQRES 20 A 286 GLN THR MET SER ASP THR THR PHE LYS ALA LEU ARG ARG SEQRES 21 A 286 GLN LEU PRO VAL THR ARG THR LYS ILE ASP TRP ASN LYS SEQRES 22 A 286 ILE LEU SER TYR LYS ILE GLY LYS GLU MET GLN ASN ALA SEQRES 1 B 244 MET SER ASP GLN GLN LEU ASP CYS ALA LEU ASP LEU MET SEQRES 2 B 244 ARG ARG LEU PRO PRO GLN GLN ILE GLU LYS ASN LEU SER SEQRES 3 B 244 ASP LEU ILE ASP LEU VAL PRO SER LEU CYS GLU ASP LEU SEQRES 4 B 244 LEU SER SER VAL ASP GLN PRO LEU LYS ILE ALA ARG ASP SEQRES 5 B 244 LYS VAL VAL GLY LYS ASP TYR LEU LEU CYS ASP TYR ASN SEQRES 6 B 244 ARG ASP GLY ASP SER TYR ARG SER PRO TRP SER ASN LYS SEQRES 7 B 244 TYR ASP PRO PRO LEU GLU ASP GLY ALA MET PRO SER ALA SEQRES 8 B 244 ARG LEU ARG LYS LEU GLU VAL GLU ALA ASN ASN ALA PHE SEQRES 9 B 244 ASP GLN TYR ARG ASP LEU TYR PHE GLU GLY GLY VAL SER SEQRES 10 B 244 SER VAL TYR LEU TRP ASP LEU ASP HIS GLY PHE ALA GLY SEQRES 11 B 244 VAL ILE LEU ILE LYS LYS ALA GLY ASP GLY SER LYS LYS SEQRES 12 B 244 ILE LYS GLY CYS TRP ASP SER ILE HIS VAL VAL GLU VAL SEQRES 13 B 244 GLN GLU LYS SER SER GLY ARG THR ALA HIS TYR LYS LEU SEQRES 14 B 244 THR SER THR VAL MET LEU TRP LEU GLN THR ASN LYS THR SEQRES 15 B 244 GLY SER GLY THR MET ASN LEU GLY GLY SER LEU THR ARG SEQRES 16 B 244 GLN MET GLU LYS ASP GLU THR VAL SER ASP SER SER PRO SEQRES 17 B 244 HIS ILE ALA ASN ILE GLY ARG LEU VAL GLU ASP MET GLU SEQRES 18 B 244 ASN LYS ILE ARG SER THR LEU ASN GLU ILE TYR PHE GLY SEQRES 19 B 244 LYS THR LYS ASP ILE VAL ASN GLY LEU ARG SEQRES 1 C 23 ASN LEU LEU HIS LEU THR ALA ASN ARG PRO LYS MET PRO SEQRES 2 C 23 GLY ARG ARG LEU PRO GLY ARG PHE ASN GLY HET BA B 245 1 HETNAM BA BARIUM ION FORMUL 4 BA BA 2+ FORMUL 5 HOH *411(H2 O) HELIX 1 1 SER A 9 HIS A 23 1 15 HELIX 2 2 GLU A 28 ASN A 41 1 14 HELIX 3 3 ASN A 42 GLN A 61 1 20 HELIX 4 4 THR A 77 ASP A 81 5 5 HELIX 5 5 LEU A 117 TYR A 136 1 20 HELIX 6 6 PRO A 165 ASN A 167 5 3 HELIX 7 7 SER A 220 THR A 253 1 34 HELIX 8 8 THR A 253 ARG A 259 1 7 HELIX 9 9 ASP A 270 SER A 276 1 7 HELIX 10 10 GLN B 4 ARG B 14 1 11 HELIX 11 11 PRO B 17 GLN B 19 5 3 HELIX 12 12 GLN B 20 VAL B 32 1 13 HELIX 13 13 LEU B 35 VAL B 43 1 9 HELIX 14 14 CYS B 62 TYR B 64 5 3 HELIX 15 15 SER B 90 GLU B 113 1 24 HELIX 16 16 GLY B 140 ILE B 144 5 5 HELIX 17 17 PRO B 208 GLY B 234 1 27 HELIX 18 18 GLY B 234 ARG B 244 1 11 HELIX 19 19 HIS C 488 ARG C 493 5 6 HELIX 20 20 PRO C 502 ASN C 506 5 5 SHEET 1 A 2 PRO A 64 VAL A 65 0 SHEET 2 A 2 VAL A 74 LEU A 75 -1 O VAL A 74 N VAL A 65 SHEET 1 B 3 ARG A 86 ASP A 89 0 SHEET 2 B 3 ILE A 94 ASP A 99 -1 O ILE A 94 N ASP A 89 SHEET 3 B 3 GLU A 104 PRO A 110 -1 O SER A 106 N LYS A 97 SHEET 1 C10 PHE A 140 ILE A 148 0 SHEET 2 C10 GLN A 151 GLN A 164 -1 O GLN A 151 N ILE A 148 SHEET 3 C10 TRP A 169 THR A 182 -1 O TRP A 177 N ALA A 156 SHEET 4 C10 THR A 185 TYR A 198 -1 O HIS A 197 N ASN A 170 SHEET 5 C10 GLY A 202 GLN A 217 -1 O VAL A 204 N TYR A 198 SHEET 6 C10 GLY B 185 THR B 202 -1 O GLY B 190 N GLN A 205 SHEET 7 C10 THR B 164 LYS B 181 -1 N TYR B 167 O LYS B 199 SHEET 8 C10 LYS B 145 GLU B 158 -1 N VAL B 153 O THR B 170 SHEET 9 C10 GLY B 127 ALA B 137 -1 N PHE B 128 O VAL B 156 SHEET 10 C10 VAL B 116 LEU B 124 -1 N SER B 118 O LEU B 133 SHEET 1 D 2 LYS B 48 ASP B 52 0 SHEET 2 D 2 LYS B 57 LEU B 61 -1 O TYR B 59 N ALA B 50 SHEET 1 E 3 ARG B 66 ASP B 67 0 SHEET 2 E 3 SER B 70 ARG B 72 -1 O SER B 70 N ASP B 67 SHEET 3 E 3 TYR B 79 ASP B 80 -1 O ASP B 80 N TYR B 71 LINK OD1 ASP B 38 BA BA B 245 1555 1555 2.97 LINK OD2 ASP B 38 BA BA B 245 1555 1555 3.39 LINK BA BA B 245 O HOH B 373 1555 1555 2.84 LINK BA BA B 245 O HOH B 399 1555 1555 3.27 CISPEP 1 PRO A 183 PRO A 184 0 6.55 CISPEP 2 ASP B 80 PRO B 81 0 -9.24 SITE 1 AC1 2 ASP B 38 HOH B 373 CRYST1 59.119 63.871 141.089 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007088 0.00000