PDB Short entry for 3AAF HEADER DNA BINDING PROTEIN/DNA 16-NOV-09 3AAF TITLE STRUCTURE OF WRN RQC DOMAIN BOUND TO DOUBLE-STRANDED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: WERNER SYNDROME ATP-DEPENDENT HELICASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RECQ C-TERMINAL (RQC) DOMAIN; COMPND 5 SYNONYM: WERNER SYNDROME PROTEIN, WRN; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*AP*CP*CP*CP*TP*AP*AP*TP*TP*AP*GP*GP*GP*T)-3'); COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-5X-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS HELIX-TURN-HELIX, WINGED-HELIX, PROTEIN-DNA COMPLEX, DNA-BINDING, KEYWDS 2 HELICASE, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.KITANO,T.HAKOSHIMA REVDAT 4 13-MAR-24 3AAF 1 REMARK SEQADV REVDAT 3 13-JUL-11 3AAF 1 VERSN REVDAT 2 14-APR-10 3AAF 1 JRNL REVDAT 1 16-FEB-10 3AAF 0 JRNL AUTH K.KITANO,S.Y.KIM,T.HAKOSHIMA JRNL TITL STRUCTURAL BASIS FOR DNA STRAND SEPARATION BY THE JRNL TITL 2 UNCONVENTIONAL WINGED-HELIX DOMAIN OF RECQ HELICASE WRN JRNL REF STRUCTURE V. 18 177 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20159463 JRNL DOI 10.1016/J.STR.2009.12.011 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2107 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2812 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1776 REMARK 3 NUCLEIC ACID ATOMS : 568 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.60000 REMARK 3 B22 (A**2) : 1.60000 REMARK 3 B33 (A**2) : -3.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.336 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2460 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3426 ; 1.409 ; 2.241 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 5.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;30.188 ;23.023 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 334 ;15.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.815 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1660 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1073 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1627 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 280 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 0.614 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1716 ; 1.038 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1750 ; 1.491 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1710 ; 2.308 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 956 A 1064 REMARK 3 ORIGIN FOR THE GROUP (A): 46.4204 29.7168 40.1429 REMARK 3 T TENSOR REMARK 3 T11: 0.0113 T22: -0.1277 REMARK 3 T33: -0.0713 T12: 0.0812 REMARK 3 T13: -0.0385 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 1.1367 L22: 0.7054 REMARK 3 L33: 6.5199 L12: -0.3664 REMARK 3 L13: -0.5404 L23: 0.0281 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0319 S13: -0.1477 REMARK 3 S21: 0.0402 S22: 0.0580 S23: -0.1108 REMARK 3 S31: 0.8357 S32: 0.3218 S33: -0.0672 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 956 B 1064 REMARK 3 ORIGIN FOR THE GROUP (A): 71.4970 4.6582 9.3888 REMARK 3 T TENSOR REMARK 3 T11: -0.1300 T22: -0.0606 REMARK 3 T33: -0.0845 T12: 0.0802 REMARK 3 T13: -0.0017 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 0.4814 L22: 1.0280 REMARK 3 L33: 6.4850 L12: -0.4095 REMARK 3 L13: 0.5756 L23: 0.7674 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.0278 S13: 0.1368 REMARK 3 S21: -0.0507 S22: -0.1642 S23: 0.1981 REMARK 3 S31: -0.5646 S32: -0.6593 S33: 0.1808 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): 61.7301 19.1619 26.3057 REMARK 3 T TENSOR REMARK 3 T11: 0.2762 T22: 0.0872 REMARK 3 T33: 0.0592 T12: 0.2619 REMARK 3 T13: -0.1488 T23: -0.0811 REMARK 3 L TENSOR REMARK 3 L11: 4.0973 L22: 5.4994 REMARK 3 L33: 0.2149 L12: -4.5257 REMARK 3 L13: -0.7156 L23: 0.5783 REMARK 3 S TENSOR REMARK 3 S11: -0.1012 S12: 0.0535 S13: -0.2763 REMARK 3 S21: 0.1449 S22: -0.0364 S23: -0.0562 REMARK 3 S31: -0.1017 S32: -0.0169 S33: 0.1376 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 14 REMARK 3 ORIGIN FOR THE GROUP (A): 60.7411 19.9857 23.2908 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.1260 REMARK 3 T33: 0.0209 T12: 0.2069 REMARK 3 T13: -0.0556 T23: -0.0793 REMARK 3 L TENSOR REMARK 3 L11: 8.3053 L22: 9.3371 REMARK 3 L33: 0.9492 L12: -8.8022 REMARK 3 L13: 2.1961 L23: -2.3827 REMARK 3 S TENSOR REMARK 3 S11: -0.4467 S12: -0.4238 S13: -0.3516 REMARK 3 S21: 0.5648 S22: 0.5762 S23: 0.3865 REMARK 3 S31: -0.3518 S32: -0.5307 S33: -0.1296 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 RESIDUE RANGE : A 4 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): 59.9585 16.6177 23.6393 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.1560 REMARK 3 T33: 0.1229 T12: 0.0760 REMARK 3 T13: -0.0385 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 0.9845 L22: 0.9315 REMARK 3 L33: 0.4726 L12: -0.9577 REMARK 3 L13: -0.6821 L23: 0.6635 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.1305 S13: 0.0002 REMARK 3 S21: 0.0276 S22: -0.1125 S23: 0.0221 REMARK 3 S31: -0.0558 S32: -0.1964 S33: 0.1246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3AAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000029013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-07; 19-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 90; 90 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL44XU; BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000; 1.0057, 1.0090, 1.0257 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040; RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41719 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.2M SODIUM ACETATE, REMARK 280 0.1M CAPS-NAOH, PH 9, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.64550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.96825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.32275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.64550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.32275 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.96825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 83 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 290 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 258 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 946 REMARK 465 ILE A 947 REMARK 465 ARG A 948 REMARK 465 MET A 949 REMARK 465 ASP A 950 REMARK 465 ASP A 951 REMARK 465 SER A 952 REMARK 465 GLU A 953 REMARK 465 ASP A 954 REMARK 465 THR A 955 REMARK 465 ALA A 1065 REMARK 465 ASN A 1066 REMARK 465 GLU A 1067 REMARK 465 GLU A 1068 REMARK 465 LEU A 1069 REMARK 465 CYS A 1070 REMARK 465 PRO A 1071 REMARK 465 LYS A 1072 REMARK 465 LYS A 1073 REMARK 465 PHE A 1074 REMARK 465 LEU A 1075 REMARK 465 LEU A 1076 REMARK 465 PRO A 1077 REMARK 465 SER A 1078 REMARK 465 SER A 1079 REMARK 465 GLY B 946 REMARK 465 ILE B 947 REMARK 465 ARG B 948 REMARK 465 MET B 949 REMARK 465 ASP B 950 REMARK 465 ASP B 951 REMARK 465 SER B 952 REMARK 465 GLU B 953 REMARK 465 ASP B 954 REMARK 465 THR B 955 REMARK 465 ALA B 1065 REMARK 465 ASN B 1066 REMARK 465 GLU B 1067 REMARK 465 GLU B 1068 REMARK 465 LEU B 1069 REMARK 465 CYS B 1070 REMARK 465 PRO B 1071 REMARK 465 LYS B 1072 REMARK 465 LYS B 1073 REMARK 465 PHE B 1074 REMARK 465 LEU B 1075 REMARK 465 LEU B 1076 REMARK 465 PRO B 1077 REMARK 465 SER B 1078 REMARK 465 SER B 1079 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 DG C 12 O HOH C 58 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B1029 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 DC C 3 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC C 4 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT C 5 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 11 C3' - O3' - P ANGL. DEV. = 11.1 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 13 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DG C 13 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG C 13 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DC D 4 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG D 12 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A1034 -72.06 77.31 REMARK 500 TYR B1034 -61.48 72.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 2 DBREF 3AAF A 949 1079 UNP Q14191 WRN_HUMAN 949 1079 DBREF 3AAF B 949 1079 UNP Q14191 WRN_HUMAN 949 1079 DBREF 3AAF C 1 14 PDB 3AAF 3AAF 1 14 DBREF 3AAF D 1 14 PDB 3AAF 3AAF 1 14 SEQADV 3AAF GLY A 946 UNP Q14191 EXPRESSION TAG SEQADV 3AAF ILE A 947 UNP Q14191 EXPRESSION TAG SEQADV 3AAF ARG A 948 UNP Q14191 EXPRESSION TAG SEQADV 3AAF GLY B 946 UNP Q14191 EXPRESSION TAG SEQADV 3AAF ILE B 947 UNP Q14191 EXPRESSION TAG SEQADV 3AAF ARG B 948 UNP Q14191 EXPRESSION TAG SEQRES 1 A 134 GLY ILE ARG MET ASP ASP SER GLU ASP THR SER TRP ASP SEQRES 2 A 134 PHE GLY PRO GLN ALA PHE LYS LEU LEU SER ALA VAL ASP SEQRES 3 A 134 ILE LEU GLY GLU LYS PHE GLY ILE GLY LEU PRO ILE LEU SEQRES 4 A 134 PHE LEU ARG GLY SER ASN SER GLN ARG LEU ALA ASP GLN SEQRES 5 A 134 TYR ARG ARG HIS SER LEU PHE GLY THR GLY LYS ASP GLN SEQRES 6 A 134 THR GLU SER TRP TRP LYS ALA PHE SER ARG GLN LEU ILE SEQRES 7 A 134 THR GLU GLY PHE LEU VAL GLU VAL SER ARG TYR ASN LYS SEQRES 8 A 134 PHE MET LYS ILE CYS ALA LEU THR LYS LYS GLY ARG ASN SEQRES 9 A 134 TRP LEU HIS LYS ALA ASN THR GLU SER GLN SER LEU ILE SEQRES 10 A 134 LEU GLN ALA ASN GLU GLU LEU CYS PRO LYS LYS PHE LEU SEQRES 11 A 134 LEU PRO SER SER SEQRES 1 B 134 GLY ILE ARG MET ASP ASP SER GLU ASP THR SER TRP ASP SEQRES 2 B 134 PHE GLY PRO GLN ALA PHE LYS LEU LEU SER ALA VAL ASP SEQRES 3 B 134 ILE LEU GLY GLU LYS PHE GLY ILE GLY LEU PRO ILE LEU SEQRES 4 B 134 PHE LEU ARG GLY SER ASN SER GLN ARG LEU ALA ASP GLN SEQRES 5 B 134 TYR ARG ARG HIS SER LEU PHE GLY THR GLY LYS ASP GLN SEQRES 6 B 134 THR GLU SER TRP TRP LYS ALA PHE SER ARG GLN LEU ILE SEQRES 7 B 134 THR GLU GLY PHE LEU VAL GLU VAL SER ARG TYR ASN LYS SEQRES 8 B 134 PHE MET LYS ILE CYS ALA LEU THR LYS LYS GLY ARG ASN SEQRES 9 B 134 TRP LEU HIS LYS ALA ASN THR GLU SER GLN SER LEU ILE SEQRES 10 B 134 LEU GLN ALA ASN GLU GLU LEU CYS PRO LYS LYS PHE LEU SEQRES 11 B 134 LEU PRO SER SER SEQRES 1 C 14 DA DC DC DC DT DA DA DT DT DA DG DG DG SEQRES 2 C 14 DT SEQRES 1 D 14 DA DC DC DC DT DA DA DT DT DA DG DG DG SEQRES 2 D 14 DT HET ACT A 1 4 HET ACT B 2 4 HETNAM ACT ACETATE ION FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *338(H2 O) HELIX 1 1 PHE A 959 LEU A 973 1 15 HELIX 2 2 ILE A 979 ARG A 987 1 9 HELIX 3 3 ALA A 995 HIS A 1001 5 7 HELIX 4 4 THR A 1011 GLU A 1025 1 15 HELIX 5 5 THR A 1044 ASN A 1055 1 12 HELIX 6 6 PHE B 959 LEU B 973 1 15 HELIX 7 7 ILE B 979 ARG B 987 1 9 HELIX 8 8 ALA B 995 HIS B 1001 5 7 HELIX 9 9 THR B 1011 GLU B 1025 1 15 HELIX 10 10 THR B 1044 ASN B 1055 1 12 SHEET 1 A 2 TRP A 957 ASP A 958 0 SHEET 2 A 2 ILE A1062 LEU A1063 -1 O LEU A1063 N TRP A 957 SHEET 1 B 2 LEU A1028 SER A1032 0 SHEET 2 B 2 LYS A1039 LEU A1043 -1 O ALA A1042 N VAL A1029 SHEET 1 C 2 TRP B 957 ASP B 958 0 SHEET 2 C 2 ILE B1062 LEU B1063 -1 O LEU B1063 N TRP B 957 SHEET 1 D 2 LEU B1028 SER B1032 0 SHEET 2 D 2 LYS B1039 LEU B1043 -1 O ALA B1042 N VAL B1029 SITE 1 AC1 6 HOH A 48 HOH A 56 ARG A1033 TYR A1034 SITE 2 AC1 6 ARG A1048 HIS A1052 SITE 1 AC2 4 HOH B 51 HOH B 313 HIS B1052 ASN B1055 CRYST1 84.077 84.077 145.291 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011894 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006883 0.00000