PDB Short entry for 3ANX HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-SEP-10 3ANX TITLE CRYSTAL STRUCTURE OF TRIAMINE/AGMATINE AMINOPROPYLTRANSFERASE (SPEE) TITLE 2 FROM THERMUS THERMOPHILUS, COMPLEXED WITH MTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POLYAMINE AMINOPROPYLTRANSFERASE, TRIAMINE/AGMATINE COMPND 5 AMINOPROPYLTRANSFERASE, AGMATINE/SPERMIDINE AMINOPROPYLTRANSFERASE; COMPND 6 EC: 2.5.1.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21C KEYWDS SPEE, SPERMINE SYNTHASE, SPERMIDINE SYNTHASE, POLYAMINE, SPERMIDINE KEYWDS 2 BIOSYNTHESIS, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.GANBE,M.OHNUMA,T.SATO,N.TANAKA,T.OSHIMA,T.KUMASAKA REVDAT 3 01-NOV-23 3ANX 1 REMARK REVDAT 2 29-JAN-14 3ANX 1 JRNL VERSN REVDAT 1 13-APR-11 3ANX 0 JRNL AUTH M.OHNUMA,T.GANBE,Y.TERUI,M.NIITSU,T.SATO,N.TANAKA, JRNL AUTH 2 M.TAMAKOSHI,K.SAMEJIMA,T.KUMASAKA,T.OSHIMA JRNL TITL CRYSTAL STRUCTURES AND ENZYMATIC PROPERTIES OF A JRNL TITL 2 TRIAMINE/AGMATINE AMINOPROPYLTRANSFERASE FROM THERMUS JRNL TITL 3 THERMOPHILUS JRNL REF J.MOL.BIOL. V. 408 971 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21458463 JRNL DOI 10.1016/J.JMB.2011.03.025 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 22098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1220 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98000 REMARK 3 B22 (A**2) : -0.98000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.343 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.416 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5239 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7115 ; 2.686 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 623 ; 9.019 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;31.833 ;22.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 866 ;22.876 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;18.528 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 775 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4050 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2884 ; 0.292 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3470 ; 0.348 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 295 ; 0.224 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.276 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.488 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3245 ; 1.290 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5070 ; 2.204 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2299 ; 3.359 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2045 ; 5.005 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ANX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000029481. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1UIR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1M MES, 1MM REMARK 280 SAM, PH 5.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.50000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.02000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.25000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.02000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.75000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.02000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.02000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 143.25000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.02000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.02000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.75000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 88.04000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 88.04000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 286.50000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 313 REMARK 465 GLY A 314 REMARK 465 GLY B 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA A 263 O HOH A 339 1.86 REMARK 500 O HOH B 355 O HOH B 359 1.88 REMARK 500 O ALA B 141 CD1 LEU B 145 2.04 REMARK 500 OE2 GLU A 146 O HOH A 396 2.08 REMARK 500 NZ LYS A 182 OD1 ASP A 241 2.08 REMARK 500 O THR A 201 NH1 ARG B 58 2.09 REMARK 500 OD1 ASN A 225 O HOH A 317 2.12 REMARK 500 O HOH B 393 O HOH B 394 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 406 O HOH A 406 7556 1.54 REMARK 500 O HOH A 405 O HOH A 405 7556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 61 CE2 TYR A 61 CD2 0.098 REMARK 500 TYR A 61 C TYR A 61 O 0.117 REMARK 500 GLU A 150 CG GLU A 150 CD 0.092 REMARK 500 VAL A 181 CB VAL A 181 CG2 0.190 REMARK 500 GLU B 273 CD GLU B 273 OE2 0.068 REMARK 500 VAL B 277 CB VAL B 277 CG2 0.141 REMARK 500 GLU B 287 CG GLU B 287 CD 0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 25 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 LEU A 49 CB - CG - CD1 ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PRO A 162 C - N - CA ANGL. DEV. = -10.5 DEGREES REMARK 500 PRO A 187 C - N - CA ANGL. DEV. = -11.8 DEGREES REMARK 500 LEU A 200 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU A 200 CB - CG - CD2 ANGL. DEV. = -15.3 DEGREES REMARK 500 VAL A 209 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 221 CG - CD - NE ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG A 308 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 308 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 PRO B 13 C - N - CA ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG B 20 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 93 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 PRO B 99 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 LEU B 237 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 157.50 -47.37 REMARK 500 VAL A 11 -51.00 -146.76 REMARK 500 ARG A 23 137.10 -174.68 REMARK 500 PRO A 31 38.06 -78.82 REMARK 500 PHE A 32 -20.46 -162.28 REMARK 500 ASP A 50 -96.58 47.04 REMARK 500 VAL A 68 -60.33 -102.03 REMARK 500 PRO A 78 104.88 -58.30 REMARK 500 THR A 100 1.20 -68.04 REMARK 500 ASP A 108 108.80 -167.83 REMARK 500 ILE A 109 -33.95 -33.85 REMARK 500 TRP A 124 -78.33 -87.65 REMARK 500 ALA A 128 -78.86 15.29 REMARK 500 GLU A 150 153.04 -48.11 REMARK 500 ASP A 161 151.01 -40.75 REMARK 500 LEU A 171 10.58 -69.08 REMARK 500 HIS A 184 33.51 -91.06 REMARK 500 ALA A 195 61.15 -116.13 REMARK 500 LEU A 199 72.61 -168.04 REMARK 500 HIS A 202 -72.39 -73.16 REMARK 500 PHE A 243 153.96 174.61 REMARK 500 ARG A 258 -70.55 -64.95 REMARK 500 ASP B 2 -154.25 -77.93 REMARK 500 ARG B 23 130.57 -171.08 REMARK 500 ALA B 26 122.04 156.60 REMARK 500 THR B 30 154.71 -24.57 REMARK 500 ASP B 50 -99.85 47.88 REMARK 500 VAL B 68 -64.34 -102.65 REMARK 500 PRO B 70 -81.48 -49.73 REMARK 500 ALA B 71 -54.47 -17.35 REMARK 500 GLU B 77 79.53 -173.16 REMARK 500 ASP B 110 77.59 81.87 REMARK 500 LYS B 118 -71.38 -45.41 REMARK 500 ALA B 128 -38.58 -34.31 REMARK 500 ILE B 138 38.17 -98.96 REMARK 500 TYR B 144 -70.29 -52.73 REMARK 500 ASP B 158 62.16 -111.05 REMARK 500 LEU B 159 -127.05 -92.22 REMARK 500 ASN B 167 106.54 177.08 REMARK 500 PRO B 168 -2.31 -55.87 REMARK 500 ALA B 195 28.84 -141.95 REMARK 500 LEU B 199 87.94 -162.42 REMARK 500 ALA B 242 -114.03 -73.40 REMARK 500 ILE B 257 -71.57 -62.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 199 LEU A 200 -142.28 REMARK 500 HIS A 202 HIS A 203 -145.06 REMARK 500 HIS A 203 ARG A 204 -137.18 REMARK 500 PRO B 70 ALA B 71 146.07 REMARK 500 PHE B 243 ASP B 244 148.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MTA A 315 REMARK 615 MTA B 315 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA B 315 DBREF 3ANX A 1 314 UNP P83816 P83816_THETH 1 314 DBREF 3ANX B 1 314 UNP P83816 P83816_THETH 1 314 SEQRES 1 A 314 MET ASP TYR GLY MET TYR PHE PHE GLU HIS VAL THR PRO SEQRES 2 A 314 TYR GLU THR LEU VAL ARG ARG MET GLU ARG VAL ILE ALA SEQRES 3 A 314 SER GLY LYS THR PRO PHE GLN ASP TYR PHE LEU PHE GLU SEQRES 4 A 314 SER LYS GLY PHE GLY LYS VAL LEU ILE LEU ASP LYS ASP SEQRES 5 A 314 VAL GLN SER THR GLU ARG ASP GLU TYR ILE TYR HIS GLU SEQRES 6 A 314 THR LEU VAL HIS PRO ALA MET LEU THR HIS PRO GLU PRO SEQRES 7 A 314 LYS ARG VAL LEU ILE VAL GLY GLY GLY GLU GLY ALA THR SEQRES 8 A 314 LEU ARG GLU VAL LEU LYS HIS PRO THR VAL GLU LYS ALA SEQRES 9 A 314 VAL MET VAL ASP ILE ASP GLY GLU LEU VAL GLU VAL ALA SEQRES 10 A 314 LYS ARG HIS MET PRO GLU TRP HIS GLN GLY ALA PHE ASP SEQRES 11 A 314 ASP PRO ARG ALA VAL LEU VAL ILE ASP ASP ALA ARG ALA SEQRES 12 A 314 TYR LEU GLU ARG THR GLU GLU ARG TYR ASP VAL VAL ILE SEQRES 13 A 314 ILE ASP LEU THR ASP PRO VAL GLY GLU ASP ASN PRO ALA SEQRES 14 A 314 ARG LEU LEU TYR THR VAL GLU PHE TYR ARG LEU VAL LYS SEQRES 15 A 314 ALA HIS LEU ASN PRO GLY GLY VAL MET GLY MET GLN ALA SEQRES 16 A 314 GLY MET ILE LEU LEU THR HIS HIS ARG VAL HIS PRO VAL SEQRES 17 A 314 VAL HIS ARG THR VAL ARG GLU ALA PHE ARG TYR VAL ARG SEQRES 18 A 314 SER TYR LYS ASN HIS ILE PRO GLY PHE PHE LEU ASN PHE SEQRES 19 A 314 GLY PHE LEU LEU ALA SER ASP ALA PHE ASP PRO ALA ALA SEQRES 20 A 314 PHE SER GLU GLY VAL ILE GLU ALA ARG ILE ARG GLU ARG SEQRES 21 A 314 ASN LEU ALA LEU ARG HIS LEU THR ALA PRO TYR LEU GLU SEQRES 22 A 314 ALA MET PHE VAL LEU PRO LYS ASP LEU LEU GLU ALA LEU SEQRES 23 A 314 GLU LYS GLU THR MET VAL SER THR ASP GLN ASN PRO PHE SEQRES 24 A 314 TYR VAL THR PRO GLU GLY GLU ALA ARG GLN ALA PRO TYR SEQRES 25 A 314 LYS GLY SEQRES 1 B 314 MET ASP TYR GLY MET TYR PHE PHE GLU HIS VAL THR PRO SEQRES 2 B 314 TYR GLU THR LEU VAL ARG ARG MET GLU ARG VAL ILE ALA SEQRES 3 B 314 SER GLY LYS THR PRO PHE GLN ASP TYR PHE LEU PHE GLU SEQRES 4 B 314 SER LYS GLY PHE GLY LYS VAL LEU ILE LEU ASP LYS ASP SEQRES 5 B 314 VAL GLN SER THR GLU ARG ASP GLU TYR ILE TYR HIS GLU SEQRES 6 B 314 THR LEU VAL HIS PRO ALA MET LEU THR HIS PRO GLU PRO SEQRES 7 B 314 LYS ARG VAL LEU ILE VAL GLY GLY GLY GLU GLY ALA THR SEQRES 8 B 314 LEU ARG GLU VAL LEU LYS HIS PRO THR VAL GLU LYS ALA SEQRES 9 B 314 VAL MET VAL ASP ILE ASP GLY GLU LEU VAL GLU VAL ALA SEQRES 10 B 314 LYS ARG HIS MET PRO GLU TRP HIS GLN GLY ALA PHE ASP SEQRES 11 B 314 ASP PRO ARG ALA VAL LEU VAL ILE ASP ASP ALA ARG ALA SEQRES 12 B 314 TYR LEU GLU ARG THR GLU GLU ARG TYR ASP VAL VAL ILE SEQRES 13 B 314 ILE ASP LEU THR ASP PRO VAL GLY GLU ASP ASN PRO ALA SEQRES 14 B 314 ARG LEU LEU TYR THR VAL GLU PHE TYR ARG LEU VAL LYS SEQRES 15 B 314 ALA HIS LEU ASN PRO GLY GLY VAL MET GLY MET GLN ALA SEQRES 16 B 314 GLY MET ILE LEU LEU THR HIS HIS ARG VAL HIS PRO VAL SEQRES 17 B 314 VAL HIS ARG THR VAL ARG GLU ALA PHE ARG TYR VAL ARG SEQRES 18 B 314 SER TYR LYS ASN HIS ILE PRO GLY PHE PHE LEU ASN PHE SEQRES 19 B 314 GLY PHE LEU LEU ALA SER ASP ALA PHE ASP PRO ALA ALA SEQRES 20 B 314 PHE SER GLU GLY VAL ILE GLU ALA ARG ILE ARG GLU ARG SEQRES 21 B 314 ASN LEU ALA LEU ARG HIS LEU THR ALA PRO TYR LEU GLU SEQRES 22 B 314 ALA MET PHE VAL LEU PRO LYS ASP LEU LEU GLU ALA LEU SEQRES 23 B 314 GLU LYS GLU THR MET VAL SER THR ASP GLN ASN PRO PHE SEQRES 24 B 314 TYR VAL THR PRO GLU GLY GLU ALA ARG GLN ALA PRO TYR SEQRES 25 B 314 LYS GLY HET MTA A 315 20 HET MTA B 315 20 HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE FORMUL 3 MTA 2(C11 H15 N5 O3 S) FORMUL 5 HOH *183(H2 O) HELIX 1 1 ASP A 59 HIS A 75 1 17 HELIX 2 2 GLY A 89 LYS A 97 1 9 HELIX 3 3 ASP A 110 MET A 121 1 12 HELIX 4 4 MET A 121 GLN A 126 1 6 HELIX 5 5 GLY A 127 ASP A 131 5 5 HELIX 6 6 ASP A 140 THR A 148 1 9 HELIX 7 7 PRO A 168 TYR A 173 5 6 HELIX 8 8 THR A 174 HIS A 184 1 11 HELIX 9 9 ARG A 204 PHE A 217 1 14 HELIX 10 10 PRO A 228 PHE A 231 5 4 HELIX 11 11 GLY A 251 ARG A 260 1 10 HELIX 12 12 THR A 268 MET A 275 1 8 HELIX 13 13 PRO A 279 GLU A 289 1 11 HELIX 14 14 GLU B 57 THR B 74 1 18 HELIX 15 15 GLY B 89 LEU B 96 1 8 HELIX 16 16 ASP B 110 MET B 121 1 12 HELIX 17 17 MET B 121 GLN B 126 1 6 HELIX 18 18 GLY B 127 ASP B 131 5 5 HELIX 19 19 ASP B 140 THR B 148 1 9 HELIX 20 20 ALA B 169 TYR B 173 5 5 HELIX 21 21 THR B 174 HIS B 184 1 11 HELIX 22 22 ARG B 204 GLU B 215 1 12 HELIX 23 23 PRO B 228 PHE B 231 5 4 HELIX 24 24 SER B 249 ARG B 260 1 12 HELIX 25 25 THR B 268 MET B 275 1 8 HELIX 26 26 PRO B 279 GLU B 289 1 11 SHEET 1 A 4 TYR A 6 THR A 12 0 SHEET 2 A 4 GLU A 15 ARG A 20 -1 O LEU A 17 N GLU A 9 SHEET 3 A 4 GLU B 15 MET B 21 -1 O THR B 16 N VAL A 18 SHEET 4 A 4 MET B 5 HIS B 10 -1 N GLU B 9 O LEU B 17 SHEET 1 B 4 ALA A 26 LYS A 29 0 SHEET 2 B 4 ASP A 34 GLU A 39 -1 O LEU A 37 N ALA A 26 SHEET 3 B 4 LYS A 45 LEU A 49 -1 O ILE A 48 N PHE A 36 SHEET 4 B 4 ASP A 52 THR A 56 -1 O GLN A 54 N LEU A 47 SHEET 1 C 7 ALA A 134 VAL A 137 0 SHEET 2 C 7 LYS A 103 VAL A 107 1 N MET A 106 O VAL A 137 SHEET 3 C 7 ARG A 80 GLY A 85 1 N VAL A 81 O LYS A 103 SHEET 4 C 7 TYR A 152 ASP A 158 1 O ASP A 153 N ARG A 80 SHEET 5 C 7 LEU A 185 ILE A 198 1 O ASN A 186 N TYR A 152 SHEET 6 C 7 LEU A 232 SER A 240 -1 O GLY A 235 N ALA A 195 SHEET 7 C 7 TYR A 219 ILE A 227 -1 N ARG A 221 O LEU A 238 SHEET 1 D 2 PHE A 299 VAL A 301 0 SHEET 2 D 2 ALA A 307 GLN A 309 -1 O ARG A 308 N TYR A 300 SHEET 1 E 4 ARG B 23 GLY B 28 0 SHEET 2 E 4 TYR B 35 SER B 40 -1 O LEU B 37 N ALA B 26 SHEET 3 E 4 GLY B 44 LEU B 49 -1 O ILE B 48 N PHE B 36 SHEET 4 E 4 ASP B 52 THR B 56 -1 O ASP B 52 N LEU B 49 SHEET 1 F 7 ALA B 134 VAL B 137 0 SHEET 2 F 7 LYS B 103 VAL B 107 1 N MET B 106 O VAL B 137 SHEET 3 F 7 ARG B 80 GLY B 85 1 N ILE B 83 O VAL B 107 SHEET 4 F 7 TYR B 152 ASP B 158 1 O ASP B 158 N VAL B 84 SHEET 5 F 7 LEU B 185 MET B 197 1 O ASN B 186 N TYR B 152 SHEET 6 F 7 ASN B 233 SER B 240 -1 O GLY B 235 N GLY B 196 SHEET 7 F 7 TYR B 219 HIS B 226 -1 N TYR B 223 O PHE B 236 SHEET 1 G 2 PHE B 299 VAL B 301 0 SHEET 2 G 2 ALA B 307 GLN B 309 -1 O ARG B 308 N TYR B 300 SITE 1 AC1 13 GLN A 33 GLN A 54 GLY A 85 GLY A 86 SITE 2 AC1 13 GLY A 87 ASP A 108 ILE A 109 LEU A 113 SITE 3 AC1 13 ASP A 140 ALA A 141 ASP A 158 THR A 160 SITE 4 AC1 13 LEU A 172 SITE 1 AC2 12 GLN B 33 GLY B 85 GLY B 86 GLY B 87 SITE 2 AC2 12 VAL B 107 ASP B 108 ILE B 109 LEU B 113 SITE 3 AC2 12 ALA B 141 ASP B 158 LEU B 159 LEU B 172 CRYST1 88.040 88.040 191.000 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005236 0.00000