PDB Short entry for 3AP2 HEADER TRANSFERASE 09-OCT-10 3AP2 TITLE CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED TITLE 2 WITH PAP,C4 PEPTIDE, AND PHOSPHATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-TYROSINE SULFOTRANSFERASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 43-359; COMPND 5 SYNONYM: TYROSYLPROTEIN SULFOTRANSFERASE 2, TPST-2; COMPND 6 EC: 2.8.2.20; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: C4 PEPTIDE; COMPND 10 CHAIN: S, T; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TPST2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICAL SYNTHESIS KEYWDS SULFOTRANSFERASE FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TERAMOTO,Y.FUJIKAWA,Y.KAWAGUCHI,K.KUROGI,M.SOEJIMA,R.ADACHI, AUTHOR 2 Y.NAKANISHI,E.MISHIRO-SATO,M.-C.LIU,Y.SAKAKIBARA,M.SUIKO,M.KIMURA, AUTHOR 3 Y.KAKUTA REVDAT 1 26-OCT-11 3AP2 0 JRNL AUTH T.TERAMOTO,Y.FUJIKAWA,Y.KAWAGUCHI,K.KUROGI,M.SOEJIMA, JRNL AUTH 2 R.ADACHI,Y.NAKANISHI,E.MISHIRO-SATO,M.-C.LIU,Y.SAKAKIBARA, JRNL AUTH 3 M.SUIKO,M.KIMURA,Y.KAKUTA JRNL TITL CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN JRNL TITL 2 SULFOTRANSFERASE-2: INSIGHTS INTO SUBSTRATE-BINDING AND JRNL TITL 3 CATALYSIS OF POST-TRANSLATIONAL PROTEIN TYROSINE SULFATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 30245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4864 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5160 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7016 ; 1.581 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 641 ; 5.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;37.259 ;23.421 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 913 ;17.395 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.875 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3863 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3125 ; 0.683 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5070 ; 1.282 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2035 ; 2.016 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1931 ; 3.259 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB029521. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : 0.12600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : 0.58500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM MALONATE (PH 5.0), 10% REMARK 280 POLYETHYLENE GLYCOL 3350, 1M SODIUM/POTASSIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.4K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 69.18950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.94658 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 76.18233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 69.18950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.94658 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 76.18233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 69.18950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.94658 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.18233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 69.18950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 39.94658 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.18233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 69.18950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 39.94658 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 76.18233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 69.18950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 39.94658 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 76.18233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.89315 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 152.36467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 79.89315 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 152.36467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 79.89315 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 152.36467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 79.89315 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 152.36467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 79.89315 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 152.36467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 79.89315 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 152.36467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 PRO A 37 REMARK 465 ARG A 38 REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 HIS A 41 REMARK 465 MET A 42 REMARK 465 GLY A 43 REMARK 465 ALA A 44 REMARK 465 MET A 45 REMARK 465 ARG A 46 REMARK 465 PRO A 47 REMARK 465 GLU A 48 REMARK 465 GLN A 49 REMARK 465 GLU A 50 REMARK 465 THR A 57 REMARK 465 ASN A 58 REMARK 465 HIS A 59 REMARK 465 LYS A 354 REMARK 465 THR A 355 REMARK 465 PRO A 356 REMARK 465 ALA A 357 REMARK 465 ASN A 358 REMARK 465 LEU A 359 REMARK 465 MET B 23 REMARK 465 GLY B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 HIS B 27 REMARK 465 HIS B 28 REMARK 465 HIS B 29 REMARK 465 HIS B 30 REMARK 465 HIS B 31 REMARK 465 HIS B 32 REMARK 465 SER B 33 REMARK 465 SER B 34 REMARK 465 GLY B 35 REMARK 465 VAL B 36 REMARK 465 PRO B 37 REMARK 465 ARG B 38 REMARK 465 GLY B 39 REMARK 465 SER B 40 REMARK 465 HIS B 41 REMARK 465 MET B 42 REMARK 465 GLY B 43 REMARK 465 ALA B 44 REMARK 465 MET B 45 REMARK 465 ARG B 46 REMARK 465 PRO B 47 REMARK 465 GLU B 48 REMARK 465 GLN B 49 REMARK 465 GLU B 50 REMARK 465 GLU B 51 REMARK 465 GLY B 56 REMARK 465 THR B 57 REMARK 465 ASN B 58 REMARK 465 HIS B 59 REMARK 465 TYR B 353 REMARK 465 LYS B 354 REMARK 465 THR B 355 REMARK 465 PRO B 356 REMARK 465 ALA B 357 REMARK 465 ASN B 358 REMARK 465 LEU B 359 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 52 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 55 -79.42 -104.65 REMARK 500 PRO A 77 154.19 -47.38 REMARK 500 ARG A 78 30.77 70.56 REMARK 500 CYS A 96 -62.39 -98.89 REMARK 500 ARG A 101 -41.01 69.76 REMARK 500 ALA A 200 120.73 -37.24 REMARK 500 HIS A 244 57.68 -141.92 REMARK 500 PRO A 274 123.40 -37.04 REMARK 500 ARG B 101 -39.63 72.84 REMARK 500 TRP B 113 -5.44 -56.43 REMARK 500 SER B 116 108.68 -58.10 REMARK 500 ASP B 184 118.46 -37.44 REMARK 500 HIS B 266 34.51 -143.39 REMARK 500 ASP T1002 -30.41 -136.37 REMARK 500 PHE T1008 -114.63 175.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3P A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3P B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 T 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AP1 RELATED DB: PDB REMARK 900 RELATED ID: 3AP3 RELATED DB: PDB DBREF 3AP2 A 43 359 UNP O60704 TPST2_HUMAN 43 359 DBREF 3AP2 B 43 359 UNP O60704 TPST2_HUMAN 43 359 DBREF 3AP2 S 1001 1009 PDB 3AP2 3AP2 1001 1009 DBREF 3AP2 T 1001 1009 PDB 3AP2 3AP2 1001 1009 SEQADV 3AP2 MET A 23 UNP O60704 EXPRESSION TAG SEQADV 3AP2 GLY A 24 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER A 25 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER A 26 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS A 27 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS A 28 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS A 29 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS A 30 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS A 31 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS A 32 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER A 33 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER A 34 UNP O60704 EXPRESSION TAG SEQADV 3AP2 GLY A 35 UNP O60704 EXPRESSION TAG SEQADV 3AP2 VAL A 36 UNP O60704 EXPRESSION TAG SEQADV 3AP2 PRO A 37 UNP O60704 EXPRESSION TAG SEQADV 3AP2 ARG A 38 UNP O60704 EXPRESSION TAG SEQADV 3AP2 GLY A 39 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER A 40 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS A 41 UNP O60704 EXPRESSION TAG SEQADV 3AP2 MET A 42 UNP O60704 EXPRESSION TAG SEQADV 3AP2 MET B 23 UNP O60704 EXPRESSION TAG SEQADV 3AP2 GLY B 24 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER B 25 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER B 26 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS B 27 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS B 28 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS B 29 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS B 30 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS B 31 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS B 32 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER B 33 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER B 34 UNP O60704 EXPRESSION TAG SEQADV 3AP2 GLY B 35 UNP O60704 EXPRESSION TAG SEQADV 3AP2 VAL B 36 UNP O60704 EXPRESSION TAG SEQADV 3AP2 PRO B 37 UNP O60704 EXPRESSION TAG SEQADV 3AP2 ARG B 38 UNP O60704 EXPRESSION TAG SEQADV 3AP2 GLY B 39 UNP O60704 EXPRESSION TAG SEQADV 3AP2 SER B 40 UNP O60704 EXPRESSION TAG SEQADV 3AP2 HIS B 41 UNP O60704 EXPRESSION TAG SEQADV 3AP2 MET B 42 UNP O60704 EXPRESSION TAG SEQRES 1 A 337 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 337 VAL PRO ARG GLY SER HIS MET GLY ALA MET ARG PRO GLU SEQRES 3 A 337 GLN GLU GLU LEU VAL MET VAL GLY THR ASN HIS VAL GLU SEQRES 4 A 337 TYR ARG TYR GLY LYS ALA MET PRO LEU ILE PHE VAL GLY SEQRES 5 A 337 GLY VAL PRO ARG SER GLY THR THR LEU MET ARG ALA MET SEQRES 6 A 337 LEU ASP ALA HIS PRO GLU VAL ARG CYS GLY GLU GLU THR SEQRES 7 A 337 ARG ILE ILE PRO ARG VAL LEU ALA MET ARG GLN ALA TRP SEQRES 8 A 337 SER LYS SER GLY ARG GLU LYS LEU ARG LEU ASP GLU ALA SEQRES 9 A 337 GLY VAL THR ASP GLU VAL LEU ASP ALA ALA MET GLN ALA SEQRES 10 A 337 PHE ILE LEU GLU VAL ILE ALA LYS HIS GLY GLU PRO ALA SEQRES 11 A 337 ARG VAL LEU CYS ASN LYS ASP PRO PHE THR LEU LYS SER SEQRES 12 A 337 SER VAL TYR LEU SER ARG LEU PHE PRO ASN SER LYS PHE SEQRES 13 A 337 LEU LEU MET VAL ARG ASP GLY ARG ALA SER VAL HIS SER SEQRES 14 A 337 MET ILE THR ARG LYS VAL THR ILE ALA GLY PHE ASP LEU SEQRES 15 A 337 SER SER TYR ARG ASP CYS LEU THR LYS TRP ASN LYS ALA SEQRES 16 A 337 ILE GLU VAL MET TYR ALA GLN CYS MET GLU VAL GLY LYS SEQRES 17 A 337 GLU LYS CYS LEU PRO VAL TYR TYR GLU GLN LEU VAL LEU SEQRES 18 A 337 HIS PRO ARG ARG SER LEU LYS LEU ILE LEU ASP PHE LEU SEQRES 19 A 337 GLY ILE ALA TRP SER ASP ALA VAL LEU HIS HIS GLU ASP SEQRES 20 A 337 LEU ILE GLY LYS PRO GLY GLY VAL SER LEU SER LYS ILE SEQRES 21 A 337 GLU ARG SER THR ASP GLN VAL ILE LYS PRO VAL ASN LEU SEQRES 22 A 337 GLU ALA LEU SER LYS TRP THR GLY HIS ILE PRO GLY ASP SEQRES 23 A 337 VAL VAL ARG ASP MET ALA GLN ILE ALA PRO MET LEU ALA SEQRES 24 A 337 GLN LEU GLY TYR ASP PRO TYR ALA ASN PRO PRO ASN TYR SEQRES 25 A 337 GLY ASN PRO ASP PRO PHE VAL ILE ASN ASN THR GLN ARG SEQRES 26 A 337 VAL LEU LYS GLY ASP TYR LYS THR PRO ALA ASN LEU SEQRES 1 B 337 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 337 VAL PRO ARG GLY SER HIS MET GLY ALA MET ARG PRO GLU SEQRES 3 B 337 GLN GLU GLU LEU VAL MET VAL GLY THR ASN HIS VAL GLU SEQRES 4 B 337 TYR ARG TYR GLY LYS ALA MET PRO LEU ILE PHE VAL GLY SEQRES 5 B 337 GLY VAL PRO ARG SER GLY THR THR LEU MET ARG ALA MET SEQRES 6 B 337 LEU ASP ALA HIS PRO GLU VAL ARG CYS GLY GLU GLU THR SEQRES 7 B 337 ARG ILE ILE PRO ARG VAL LEU ALA MET ARG GLN ALA TRP SEQRES 8 B 337 SER LYS SER GLY ARG GLU LYS LEU ARG LEU ASP GLU ALA SEQRES 9 B 337 GLY VAL THR ASP GLU VAL LEU ASP ALA ALA MET GLN ALA SEQRES 10 B 337 PHE ILE LEU GLU VAL ILE ALA LYS HIS GLY GLU PRO ALA SEQRES 11 B 337 ARG VAL LEU CYS ASN LYS ASP PRO PHE THR LEU LYS SER SEQRES 12 B 337 SER VAL TYR LEU SER ARG LEU PHE PRO ASN SER LYS PHE SEQRES 13 B 337 LEU LEU MET VAL ARG ASP GLY ARG ALA SER VAL HIS SER SEQRES 14 B 337 MET ILE THR ARG LYS VAL THR ILE ALA GLY PHE ASP LEU SEQRES 15 B 337 SER SER TYR ARG ASP CYS LEU THR LYS TRP ASN LYS ALA SEQRES 16 B 337 ILE GLU VAL MET TYR ALA GLN CYS MET GLU VAL GLY LYS SEQRES 17 B 337 GLU LYS CYS LEU PRO VAL TYR TYR GLU GLN LEU VAL LEU SEQRES 18 B 337 HIS PRO ARG ARG SER LEU LYS LEU ILE LEU ASP PHE LEU SEQRES 19 B 337 GLY ILE ALA TRP SER ASP ALA VAL LEU HIS HIS GLU ASP SEQRES 20 B 337 LEU ILE GLY LYS PRO GLY GLY VAL SER LEU SER LYS ILE SEQRES 21 B 337 GLU ARG SER THR ASP GLN VAL ILE LYS PRO VAL ASN LEU SEQRES 22 B 337 GLU ALA LEU SER LYS TRP THR GLY HIS ILE PRO GLY ASP SEQRES 23 B 337 VAL VAL ARG ASP MET ALA GLN ILE ALA PRO MET LEU ALA SEQRES 24 B 337 GLN LEU GLY TYR ASP PRO TYR ALA ASN PRO PRO ASN TYR SEQRES 25 B 337 GLY ASN PRO ASP PRO PHE VAL ILE ASN ASN THR GLN ARG SEQRES 26 B 337 VAL LEU LYS GLY ASP TYR LYS THR PRO ALA ASN LEU SEQRES 1 S 9 GLU ASP PHE GLU ASP TYR GLU PHE ASP SEQRES 1 T 9 GLU ASP PHE GLU ASP TYR GLU PHE ASP HET A3P A 1 27 HET A3P B 1 27 HET GOL B 360 6 HET PO4 T 1 5 HETNAM A3P ADENOSINE-3'-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 A3P 2(C10 H15 N5 O10 P2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 PO4 O4 P 3- FORMUL 9 HOH *54(H2 O) HELIX 1 1 GLY A 80 ALA A 90 1 11 HELIX 2 2 ARG A 101 SER A 116 1 16 HELIX 3 3 SER A 116 ALA A 126 1 11 HELIX 4 4 THR A 129 HIS A 148 1 20 HELIX 5 5 PRO A 160 LYS A 164 5 5 HELIX 6 6 SER A 165 PHE A 173 1 9 HELIX 7 7 ASP A 184 LYS A 196 1 13 HELIX 8 8 SER A 206 GLY A 229 1 24 HELIX 9 9 TYR A 238 HIS A 244 1 7 HELIX 10 10 HIS A 244 GLY A 257 1 14 HELIX 11 11 SER A 261 LEU A 270 5 10 HELIX 12 12 SER A 285 ILE A 290 1 6 HELIX 13 13 PRO A 306 ALA A 317 1 12 HELIX 14 14 PRO A 318 LEU A 323 1 6 HELIX 15 15 ASP A 338 GLY A 351 1 14 HELIX 16 16 GLY B 80 ALA B 90 1 11 HELIX 17 17 ARG B 101 SER B 116 1 16 HELIX 18 18 SER B 116 ALA B 126 1 11 HELIX 19 19 THR B 129 HIS B 148 1 20 HELIX 20 20 PRO B 160 LYS B 164 5 5 HELIX 21 21 SER B 165 PHE B 173 1 9 HELIX 22 22 ASP B 184 ARG B 195 1 12 HELIX 23 23 SER B 206 GLY B 229 1 24 HELIX 24 24 TYR B 238 HIS B 244 1 7 HELIX 25 25 HIS B 244 GLY B 257 1 14 HELIX 26 26 SER B 261 LEU B 270 5 10 HELIX 27 27 SER B 285 ILE B 290 1 6 HELIX 28 28 PRO B 306 ASP B 312 1 7 HELIX 29 29 ASP B 312 ALA B 317 1 6 HELIX 30 30 PRO B 318 LEU B 323 1 6 HELIX 31 31 ASP B 338 GLY B 351 1 14 SHEET 1 A 2 LEU A 52 MET A 54 0 SHEET 2 A 2 TYR A 62 TYR A 64 -1 O TYR A 62 N MET A 54 SHEET 1 B 5 VAL A 94 ARG A 95 0 SHEET 2 B 5 VAL A 154 LYS A 158 1 O CYS A 156 N ARG A 95 SHEET 3 B 5 LEU A 70 GLY A 75 1 N ILE A 71 O ASN A 157 SHEET 4 B 5 LYS A 177 VAL A 182 1 O LYS A 177 N PHE A 72 SHEET 5 B 5 CYS A 233 TYR A 237 1 O LEU A 234 N PHE A 178 SHEET 1 C 5 VAL B 94 ARG B 95 0 SHEET 2 C 5 VAL B 154 LYS B 158 1 O CYS B 156 N ARG B 95 SHEET 3 C 5 LEU B 70 GLY B 74 1 N VAL B 73 O ASN B 157 SHEET 4 C 5 SER B 176 VAL B 182 1 O LYS B 177 N LEU B 70 SHEET 5 C 5 CYS B 233 TYR B 237 1 O VAL B 236 N LEU B 180 SSBOND 1 CYS A 96 CYS A 156 1555 1555 2.02 SSBOND 2 CYS A 225 CYS A 233 1555 1555 2.06 SSBOND 3 CYS B 96 CYS B 156 1555 1555 2.06 SSBOND 4 CYS B 225 CYS B 233 1555 1555 2.09 CISPEP 1 ASN A 330 PRO A 331 0 7.43 CISPEP 2 ASN B 330 PRO B 331 0 7.15 SITE 1 AC1 20 ARG A 78 SER A 79 GLY A 80 THR A 81 SITE 2 AC1 20 THR A 82 LEU A 83 ARG A 183 SER A 191 SITE 3 AC1 20 ARG A 195 TYR A 238 SER A 285 GLN A 288 SITE 4 AC1 20 VAL A 289 LYS A 291 PRO A 292 VAL A 293 SITE 5 AC1 20 ASN A 294 ALA A 297 LYS A 300 HOH A 367 SITE 1 AC2 21 HOH B 5 ARG B 78 SER B 79 GLY B 80 SITE 2 AC2 21 THR B 81 THR B 82 LEU B 83 ARG B 183 SITE 3 AC2 21 SER B 191 ARG B 195 TYR B 238 SER B 285 SITE 4 AC2 21 GLN B 288 VAL B 289 LYS B 291 PRO B 292 SITE 5 AC2 21 VAL B 293 ASN B 294 ALA B 297 LYS B 300 SITE 6 AC2 21 HOH B 363 SITE 1 AC3 7 GLN A 346 LEU A 349 LEU B 295 GLU B 296 SITE 2 AC3 7 LEU B 298 SER B 299 LYS B 300 SITE 1 AC4 4 ARG A 118 LYS B 196 ARG B 284 ASP T1005 CRYST1 138.379 138.379 228.547 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007227 0.004172 0.000000 0.00000 SCALE2 0.000000 0.008344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004375 0.00000