PDB Short entry for 3APS HEADER OXIDOREDUCTASE 20-OCT-10 3APS TITLE CRYSTAL STRUCTURE OF TRX4 DOMAIN OF ERDJ5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY C MEMBER 10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRX4 DOMAIN (UNP RESIDUES 668-789); COMPND 5 SYNONYM: ER-RESIDENT PROTEIN ERDJ5, ENDOPLASMIC RETICULUM DNAJ-PDI COMPND 6 FUSION PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DNAJC10, ERDJ5, JPDI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCOLD-TF KEYWDS THIOREDOXIN FOLD, CXXC MOTIF, ENDOPLASMIC RETICULUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.INABA,M.SUZUKI,K.NAGATA REVDAT 1 20-APR-11 3APS 0 JRNL AUTH M.HAGIWARA,K.MAEGAWA,M.SUZUKI,R.USHIODA,K.ARAKI,Y.MATSUMOTO, JRNL AUTH 2 J.HOSEKI,K.NAGATA,K.INABA JRNL TITL STRUCTURAL BASIS OF AN ERAD PATHWAY MEDIATED BY THE JRNL TITL 2 ER-RESIDENT PROTEIN DISULFIDE REDUCTASE ERDJ5. JRNL REF MOL.CELL V. 41 432 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 21329881 JRNL DOI 10.1016/J.MOLCEL.2011.01.021 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0085 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 19032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1330 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.35000 REMARK 3 B22 (A**2) : -1.02000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.754 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1885 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2551 ; 1.562 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;41.508 ;24.634 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 332 ;16.564 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1400 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1140 ; 0.916 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1836 ; 1.676 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 745 ; 2.672 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 715 ; 4.445 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 669 A 782 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2340 1.7610 24.3850 REMARK 3 T TENSOR REMARK 3 T11: 0.0930 T22: 0.0445 REMARK 3 T33: 0.0227 T12: 0.0061 REMARK 3 T13: 0.0212 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.1884 L22: 3.2475 REMARK 3 L33: 2.4243 L12: 0.2504 REMARK 3 L13: 0.4806 L23: 0.0100 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.1999 S13: 0.1048 REMARK 3 S21: -0.2749 S22: 0.0314 S23: -0.0008 REMARK 3 S31: 0.1203 S32: 0.0856 S33: -0.0216 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 669 B 780 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9340 0.3130 0.8430 REMARK 3 T TENSOR REMARK 3 T11: 0.1021 T22: 0.1668 REMARK 3 T33: 0.2331 T12: 0.0458 REMARK 3 T13: -0.0007 T23: -0.1580 REMARK 3 L TENSOR REMARK 3 L11: 3.3618 L22: 8.0958 REMARK 3 L33: 5.5229 L12: 1.8611 REMARK 3 L13: 1.4770 L23: 2.2010 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: 0.3752 S13: -0.3830 REMARK 3 S21: 0.2175 S22: 0.6622 S23: -1.1194 REMARK 3 S31: 0.3668 S32: 0.7040 S33: -0.5556 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3APS COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB029543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 34.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C/D/E REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5 % PEG 3350, 140MM LISO4, 70MM REMARK 280 HEPES PH7.5, 70MM GLYCINE, 12% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.70950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 668 REMARK 465 GLN A 783 REMARK 465 SER A 784 REMARK 465 GLN A 785 REMARK 465 VAL A 786 REMARK 465 LYS A 787 REMARK 465 ARG A 788 REMARK 465 ASN A 789 REMARK 465 LEU B 668 REMARK 465 GLN B 783 REMARK 465 SER B 784 REMARK 465 GLN B 785 REMARK 465 VAL B 786 REMARK 465 LYS B 787 REMARK 465 ARG B 788 REMARK 465 ASN B 789 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 675 O HOH B 81 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 698 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 684 -64.09 -98.91 REMARK 500 VAL B 684 -66.61 -90.92 REMARK 500 THR B 781 97.61 -64.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 790 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3APO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL-LENGTH ERDJ5 REMARK 900 RELATED ID: 3APQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF J-TRX1 FRAGMENT OF ERDJ5 DBREF 3APS A 668 789 UNP Q9DC23 DJC10_MOUSE 668 789 DBREF 3APS B 668 789 UNP Q9DC23 DJC10_MOUSE 668 789 SEQRES 1 A 122 LEU PRO GLN ALA SER ILE ASP LEU THR PRO GLN THR PHE SEQRES 2 A 122 ASN GLU LYS VAL LEU GLN GLY LYS THR HIS TRP VAL VAL SEQRES 3 A 122 ASP PHE TYR ALA PRO TRP CYS GLY PRO CYS GLN ASN PHE SEQRES 4 A 122 ALA PRO GLU PHE GLU LEU LEU ALA ARG MET ILE LYS GLY SEQRES 5 A 122 LYS VAL ARG ALA GLY LYS VAL ASP CYS GLN ALA TYR PRO SEQRES 6 A 122 GLN THR CYS GLN LYS ALA GLY ILE LYS ALA TYR PRO SER SEQRES 7 A 122 VAL LYS LEU TYR GLN TYR GLU ARG ALA LYS LYS SER ILE SEQRES 8 A 122 TRP GLU GLU GLN ILE ASN SER ARG ASP ALA LYS THR ILE SEQRES 9 A 122 ALA ALA LEU ILE TYR GLY LYS LEU GLU THR LEU GLN SER SEQRES 10 A 122 GLN VAL LYS ARG ASN SEQRES 1 B 122 LEU PRO GLN ALA SER ILE ASP LEU THR PRO GLN THR PHE SEQRES 2 B 122 ASN GLU LYS VAL LEU GLN GLY LYS THR HIS TRP VAL VAL SEQRES 3 B 122 ASP PHE TYR ALA PRO TRP CYS GLY PRO CYS GLN ASN PHE SEQRES 4 B 122 ALA PRO GLU PHE GLU LEU LEU ALA ARG MET ILE LYS GLY SEQRES 5 B 122 LYS VAL ARG ALA GLY LYS VAL ASP CYS GLN ALA TYR PRO SEQRES 6 B 122 GLN THR CYS GLN LYS ALA GLY ILE LYS ALA TYR PRO SER SEQRES 7 B 122 VAL LYS LEU TYR GLN TYR GLU ARG ALA LYS LYS SER ILE SEQRES 8 B 122 TRP GLU GLU GLN ILE ASN SER ARG ASP ALA LYS THR ILE SEQRES 9 B 122 ALA ALA LEU ILE TYR GLY LYS LEU GLU THR LEU GLN SER SEQRES 10 B 122 GLN VAL LYS ARG ASN HET SO4 A 1 5 HET GOL A 790 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *78(H2 O) HELIX 1 1 THR A 676 VAL A 684 1 9 HELIX 2 2 CYS A 700 LYS A 718 1 19 HELIX 3 3 TYR A 731 ALA A 738 1 8 HELIX 4 4 ARG A 753 LYS A 756 5 4 HELIX 5 5 ASP A 767 THR A 781 1 15 HELIX 6 6 THR B 676 VAL B 684 1 9 HELIX 7 7 CYS B 700 LYS B 718 1 19 HELIX 8 8 TYR B 731 ALA B 738 1 8 HELIX 9 9 ASP B 767 THR B 781 1 15 SHEET 1 A 5 ILE A 673 ASP A 674 0 SHEET 2 A 5 ARG A 722 ASP A 727 1 O ALA A 723 N ILE A 673 SHEET 3 A 5 TRP A 691 TYR A 696 1 N VAL A 692 O GLY A 724 SHEET 4 A 5 SER A 745 GLU A 752 -1 O SER A 745 N PHE A 695 SHEET 5 A 5 SER A 757 ILE A 763 -1 O SER A 757 N GLU A 752 SHEET 1 B 5 ILE B 673 ASP B 674 0 SHEET 2 B 5 ARG B 722 ASP B 727 1 O ALA B 723 N ILE B 673 SHEET 3 B 5 TRP B 691 TYR B 696 1 N VAL B 692 O GLY B 724 SHEET 4 B 5 SER B 745 GLU B 752 -1 O SER B 745 N PHE B 695 SHEET 5 B 5 SER B 757 ILE B 763 -1 O GLU B 761 N LEU B 748 SSBOND 1 CYS A 700 CYS A 703 1555 1555 2.16 SSBOND 2 CYS A 728 CYS A 735 1555 1555 2.04 SSBOND 3 CYS B 700 CYS B 703 1555 1555 2.11 SSBOND 4 CYS B 728 CYS B 735 1555 1555 2.02 CISPEP 1 TYR A 743 PRO A 744 0 -6.76 CISPEP 2 TYR B 743 PRO B 744 0 0.06 SITE 1 AC1 5 PRO A 677 TYR A 731 PRO A 732 GLN A 733 SITE 2 AC1 5 THR A 734 SITE 1 AC2 2 ALA A 742 TYR A 743 CRYST1 56.060 33.419 68.343 90.00 92.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017838 0.000000 0.000887 0.00000 SCALE2 0.000000 0.029923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014650 0.00000