PDB Short entry for 3AU5 HEADER MOTOR PROTEIN 28-JAN-11 3AU5 TITLE STRUCTURE OF THE HUMAN MYOSIN-X MYTH4-FERM CASSETTE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-X; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MYTH4-FERM CASSETTE, UNP RESIDUES 1486-2058; COMPND 5 SYNONYM: UNCONVENTIONAL MYOSIN-10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYO10, KIAA0799; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET47B KEYWDS PROTEIN-PROTEIN INTERACTION, MOTOR PROTEIN CARGO TRANSPORTATION, KEYWDS 2 MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIRANO,A.TAKAHASHI,T.HAKOSHIMA REVDAT 3 01-NOV-23 3AU5 1 SEQADV REVDAT 2 22-JAN-14 3AU5 1 JRNL REVDAT 1 13-JUL-11 3AU5 0 JRNL AUTH Y.HIRANO,T.HATANO,A.TAKAHASHI,M.TORIYAMA,N.INAGAKI, JRNL AUTH 2 T.HAKOSHIMA JRNL TITL STRUCTURAL BASIS OF CARGO RECOGNITION BY THE MYOSIN-X JRNL TITL 2 MYTH4-FERM DOMAIN JRNL REF EMBO J. V. 30 2734 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21642953 JRNL DOI 10.1038/EMBOJ.2011.177 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 55512.610 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 40247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2021 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5377 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 294 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.39000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : 6.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.590 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.030 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.060 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 44.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3AU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000029697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99458 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR , SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3AU4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 5% MPD, 0.1M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.65650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1484 REMARK 465 PRO A 1485 REMARK 465 THR A 1486 REMARK 465 ARG A 1487 REMARK 465 TRP A 1488 REMARK 465 SER A 1489 REMARK 465 SER A 1490 REMARK 465 ALA A 1491 REMARK 465 ILE A 1492 REMARK 465 GLN A 1493 REMARK 465 ASN A 1494 REMARK 465 VAL A 1495 REMARK 465 THR A 1496 REMARK 465 ASP A 1497 REMARK 465 THR A 1498 REMARK 465 LYS A 1499 REMARK 465 ALA A 1500 REMARK 465 GLU A 1580 REMARK 465 SER A 1581 REMARK 465 GLU A 1776 REMARK 465 VAL A 1777 REMARK 465 GLY A 1778 REMARK 465 ASP A 1779 REMARK 465 ILE A 1884 REMARK 465 SER A 1885 REMARK 465 GLN A 1886 REMARK 465 SER A 1887 REMARK 465 THR A 1888 REMARK 465 LYS A 1889 REMARK 465 THR A 1890 REMARK 465 PHE A 1891 REMARK 465 SER A 1892 REMARK 465 PHE A 1893 REMARK 465 ARG A 1894 REMARK 465 THR A 1895 REMARK 465 GLY A 1896 REMARK 465 SER A 1897 REMARK 465 VAL A 1898 REMARK 465 VAL A 1899 REMARK 465 ARG A 1900 REMARK 465 GLN A 1901 REMARK 465 LYS A 1902 REMARK 465 VAL A 1903 REMARK 465 GLU A 1904 REMARK 465 GLU A 1905 REMARK 465 GLU A 1906 REMARK 465 GLN A 1907 REMARK 465 MET A 1908 REMARK 465 LEU A 1909 REMARK 465 ASP A 1910 REMARK 465 MET A 1911 REMARK 465 TRP A 1912 REMARK 465 ARG A 2049 REMARK 465 SER A 2050 REMARK 465 ALA A 2051 REMARK 465 SER A 2052 REMARK 465 SER A 2053 REMARK 465 GLN A 2054 REMARK 465 GLY A 2055 REMARK 465 SER A 2056 REMARK 465 SER A 2057 REMARK 465 ARG A 2058 REMARK 465 GLY B 1484 REMARK 465 PRO B 1485 REMARK 465 THR B 1486 REMARK 465 ARG B 1487 REMARK 465 TRP B 1488 REMARK 465 SER B 1489 REMARK 465 SER B 1490 REMARK 465 ALA B 1491 REMARK 465 ILE B 1492 REMARK 465 GLN B 1493 REMARK 465 ASN B 1494 REMARK 465 VAL B 1495 REMARK 465 THR B 1496 REMARK 465 ASP B 1497 REMARK 465 THR B 1498 REMARK 465 LYS B 1499 REMARK 465 ALA B 1500 REMARK 465 PRO B 1501 REMARK 465 GLY B 1550 REMARK 465 ASP B 1551 REMARK 465 ILE B 1552 REMARK 465 ASN B 1553 REMARK 465 LEU B 1554 REMARK 465 ASN B 1555 REMARK 465 LEU B 1556 REMARK 465 GLU B 1580 REMARK 465 SER B 1581 REMARK 465 MET B 1582 REMARK 465 THR B 1774 REMARK 465 SER B 1775 REMARK 465 GLU B 1776 REMARK 465 VAL B 1777 REMARK 465 GLY B 1778 REMARK 465 ASP B 1779 REMARK 465 ILE B 1884 REMARK 465 SER B 1885 REMARK 465 GLN B 1886 REMARK 465 SER B 1887 REMARK 465 THR B 1888 REMARK 465 LYS B 1889 REMARK 465 THR B 1890 REMARK 465 PHE B 1891 REMARK 465 SER B 1892 REMARK 465 PHE B 1893 REMARK 465 ARG B 1894 REMARK 465 THR B 1895 REMARK 465 GLY B 1896 REMARK 465 SER B 1897 REMARK 465 VAL B 1898 REMARK 465 VAL B 1899 REMARK 465 ARG B 1900 REMARK 465 GLN B 1901 REMARK 465 LYS B 1902 REMARK 465 VAL B 1903 REMARK 465 GLU B 1904 REMARK 465 GLU B 1905 REMARK 465 GLU B 1906 REMARK 465 GLN B 1907 REMARK 465 MET B 1908 REMARK 465 LEU B 1909 REMARK 465 ASP B 1910 REMARK 465 ARG B 2049 REMARK 465 SER B 2050 REMARK 465 ALA B 2051 REMARK 465 SER B 2052 REMARK 465 SER B 2053 REMARK 465 GLN B 2054 REMARK 465 GLY B 2055 REMARK 465 SER B 2056 REMARK 465 SER B 2057 REMARK 465 ARG B 2058 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A1551 CG OD1 OD2 REMARK 470 LEU A1576 CG CD1 CD2 REMARK 470 LYS A1680 CG CD CE NZ REMARK 470 GLU A1727 CG CD OE1 OE2 REMARK 470 LYS A1728 CG CD CE NZ REMARK 470 HIS A1750 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A1758 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1857 CG CD1 CD2 REMARK 470 GLN A1858 CG CD OE1 NE2 REMARK 470 ARG A1859 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1863 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1914 CG CD CE NZ REMARK 470 LYS A1963 CG CD CE NZ REMARK 470 GLU A1964 CG CD OE1 OE2 REMARK 470 LYS A1984 CG CD CE NZ REMARK 470 GLU A1987 CG CD OE1 OE2 REMARK 470 ARG A1989 CG CD NE CZ NH1 NH2 REMARK 470 LEU A2000 CG CD1 CD2 REMARK 470 LYS A2011 CG CD CE NZ REMARK 470 VAL A2014 CG1 CG2 REMARK 470 GLU A2016 CG CD OE1 OE2 REMARK 470 GLU A2018 CG CD OE1 OE2 REMARK 470 LEU A2020 CG CD1 CD2 REMARK 470 GLU A2022 CG CD OE1 OE2 REMARK 470 LYS A2034 CG CD CE NZ REMARK 470 LYS A2042 CG CD CE NZ REMARK 470 ARG A2044 CG CD NE CZ NH1 NH2 REMARK 470 TYR A2045 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A2046 OG REMARK 470 THR A2048 OG1 CG2 REMARK 470 GLN B1525 CG CD OE1 NE2 REMARK 470 LYS B1558 CG CD CE NZ REMARK 470 LYS B1560 CG CD CE NZ REMARK 470 THR B1564 OG1 CG2 REMARK 470 GLN B1566 CG CD OE1 NE2 REMARK 470 LYS B1571 CG CD CE NZ REMARK 470 LEU B1579 CG CD1 CD2 REMARK 470 SER B1583 OG REMARK 470 LYS B1680 CG CD CE NZ REMARK 470 ARG B1739 CG CD NE CZ NH1 NH2 REMARK 470 VAL B1751 CG1 CG2 REMARK 470 ARG B1859 CG CD NE CZ NH1 NH2 REMARK 470 LEU B1860 CG CD1 CD2 REMARK 470 MET B1911 CG SD CE REMARK 470 TRP B1912 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B1912 CZ3 CH2 REMARK 470 ILE B1913 CG1 CG2 CD1 REMARK 470 LYS B1914 CG CD CE NZ REMARK 470 GLU B1961 CG CD OE1 OE2 REMARK 470 LYS B1963 CG CD CE NZ REMARK 470 ARG B1989 CG CD NE CZ NH1 NH2 REMARK 470 GLU B2016 CG CD OE1 OE2 REMARK 470 THR B2047 OG1 CG2 REMARK 470 THR B2048 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1516 13.42 -145.97 REMARK 500 LEU A1547 74.93 -118.70 REMARK 500 ASP A1551 56.59 -113.72 REMARK 500 THR A1563 -88.58 -94.95 REMARK 500 LEU A1576 27.88 -72.58 REMARK 500 SER A1583 4.75 -67.54 REMARK 500 LYS A1680 -90.96 -105.69 REMARK 500 ASN A1717 -167.48 -109.24 REMARK 500 PRO A1821 92.15 -69.44 REMARK 500 GLU A1964 118.09 -167.18 REMARK 500 PRO A1968 -171.00 -60.51 REMARK 500 ARG A1985 98.76 -20.51 REMARK 500 GLU A1992 133.43 175.24 REMARK 500 ASP A2015 -177.36 51.31 REMARK 500 GLU A2016 22.87 -67.11 REMARK 500 GLU A2025 45.18 -93.90 REMARK 500 ASP B1503 -150.18 -119.60 REMARK 500 ASN B1516 15.80 -148.66 REMARK 500 ASP B1559 10.08 -64.04 REMARK 500 LYS B1560 166.15 179.16 REMARK 500 THR B1563 -77.99 -127.58 REMARK 500 ASP B1584 85.24 45.82 REMARK 500 ILE B1586 -53.54 -25.99 REMARK 500 PHE B1660 52.79 -150.85 REMARK 500 LYS B1680 -93.70 -119.41 REMARK 500 PRO B1686 135.91 -29.16 REMARK 500 ARG B1731 36.64 -76.22 REMARK 500 SER B1738 142.02 -39.51 REMARK 500 ASP B1800 -20.67 78.39 REMARK 500 GLU B1824 -58.83 -28.41 REMARK 500 LEU B1844 -38.89 -27.94 REMARK 500 GLU B1852 -9.63 -55.23 REMARK 500 GLU B1915 -70.15 -50.05 REMARK 500 LYS B1948 -5.70 -57.97 REMARK 500 LYS B1963 -75.05 -79.82 REMARK 500 PRO B1968 177.13 -57.11 REMARK 500 GLN B1969 -80.70 -73.30 REMARK 500 ARG B1985 -12.59 166.47 REMARK 500 ALA B2007 -38.64 -33.87 REMARK 500 ASP B2015 -156.80 -139.10 REMARK 500 THR B2023 133.01 -173.20 REMARK 500 THR B2047 40.01 -100.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AU4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DCC REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE SER1663THR IS NATURAL VARIANT ACCORDING TO DATABASE Q9HD67 REMARK 999 (MYO10_HUMAN). DBREF 3AU5 A 1486 2058 UNP Q9HD67 MYO10_HUMAN 1486 2058 DBREF 3AU5 B 1486 2058 UNP Q9HD67 MYO10_HUMAN 1486 2058 SEQADV 3AU5 GLY A 1484 UNP Q9HD67 EXPRESSION TAG SEQADV 3AU5 PRO A 1485 UNP Q9HD67 EXPRESSION TAG SEQADV 3AU5 THR A 1663 UNP Q9HD67 SER 1663 SEE REMARK 999 SEQADV 3AU5 A UNP Q9HD67 THR 1872 DELETION SEQADV 3AU5 A UNP Q9HD67 PRO 1873 DELETION SEQADV 3AU5 A UNP Q9HD67 CYS 1874 DELETION SEQADV 3AU5 A UNP Q9HD67 GLU 1875 DELETION SEQADV 3AU5 A UNP Q9HD67 ARG 1876 DELETION SEQADV 3AU5 A UNP Q9HD67 LEU 1877 DELETION SEQADV 3AU5 A UNP Q9HD67 GLU 1878 DELETION SEQADV 3AU5 A UNP Q9HD67 LYS 1879 DELETION SEQADV 3AU5 A UNP Q9HD67 ARG 1880 DELETION SEQADV 3AU5 A UNP Q9HD67 ARG 1881 DELETION SEQADV 3AU5 A UNP Q9HD67 THR 1882 DELETION SEQADV 3AU5 A UNP Q9HD67 SER 1883 DELETION SEQADV 3AU5 A UNP Q9HD67 PHE 1884 DELETION SEQADV 3AU5 A UNP Q9HD67 LEU 1885 DELETION SEQADV 3AU5 A UNP Q9HD67 GLU 1886 DELETION SEQADV 3AU5 A UNP Q9HD67 GLY 1887 DELETION SEQADV 3AU5 A UNP Q9HD67 THR 1888 DELETION SEQADV 3AU5 A UNP Q9HD67 LEU 1889 DELETION SEQADV 3AU5 A UNP Q9HD67 ARG 1890 DELETION SEQADV 3AU5 A UNP Q9HD67 ARG 1891 DELETION SEQADV 3AU5 GLY B 1484 UNP Q9HD67 EXPRESSION TAG SEQADV 3AU5 PRO B 1485 UNP Q9HD67 EXPRESSION TAG SEQADV 3AU5 THR B 1663 UNP Q9HD67 SER 1663 SEE REMARK 999 SEQADV 3AU5 B UNP Q9HD67 THR 1872 DELETION SEQADV 3AU5 B UNP Q9HD67 PRO 1873 DELETION SEQADV 3AU5 B UNP Q9HD67 CYS 1874 DELETION SEQADV 3AU5 B UNP Q9HD67 GLU 1875 DELETION SEQADV 3AU5 B UNP Q9HD67 ARG 1876 DELETION SEQADV 3AU5 B UNP Q9HD67 LEU 1877 DELETION SEQADV 3AU5 B UNP Q9HD67 GLU 1878 DELETION SEQADV 3AU5 B UNP Q9HD67 LYS 1879 DELETION SEQADV 3AU5 B UNP Q9HD67 ARG 1880 DELETION SEQADV 3AU5 B UNP Q9HD67 ARG 1881 DELETION SEQADV 3AU5 B UNP Q9HD67 THR 1882 DELETION SEQADV 3AU5 B UNP Q9HD67 SER 1883 DELETION SEQADV 3AU5 B UNP Q9HD67 PHE 1884 DELETION SEQADV 3AU5 B UNP Q9HD67 LEU 1885 DELETION SEQADV 3AU5 B UNP Q9HD67 GLU 1886 DELETION SEQADV 3AU5 B UNP Q9HD67 GLY 1887 DELETION SEQADV 3AU5 B UNP Q9HD67 THR 1888 DELETION SEQADV 3AU5 B UNP Q9HD67 LEU 1889 DELETION SEQADV 3AU5 B UNP Q9HD67 ARG 1890 DELETION SEQADV 3AU5 B UNP Q9HD67 ARG 1891 DELETION SEQRES 1 A 555 GLY PRO THR ARG TRP SER SER ALA ILE GLN ASN VAL THR SEQRES 2 A 555 ASP THR LYS ALA PRO ILE ASP THR PRO THR GLN GLN LEU SEQRES 3 A 555 ILE GLN ASP ILE LYS GLU ASN CYS LEU ASN SER ASP VAL SEQRES 4 A 555 VAL GLU GLN ILE TYR LYS ARG ASN PRO ILE LEU ARG TYR SEQRES 5 A 555 THR HIS HIS PRO LEU HIS SER PRO LEU LEU PRO LEU PRO SEQRES 6 A 555 TYR GLY ASP ILE ASN LEU ASN LEU LEU LYS ASP LYS GLY SEQRES 7 A 555 TYR THR THR LEU GLN ASP GLU ALA ILE LYS ILE PHE ASN SEQRES 8 A 555 SER LEU GLN GLN LEU GLU SER MET SER ASP PRO ILE PRO SEQRES 9 A 555 ILE ILE GLN GLY ILE LEU GLN THR GLY HIS ASP LEU ARG SEQRES 10 A 555 PRO LEU ARG ASP GLU LEU TYR CYS GLN LEU ILE LYS GLN SEQRES 11 A 555 THR ASN LYS VAL PRO HIS PRO GLY SER VAL GLY ASN LEU SEQRES 12 A 555 TYR SER TRP GLN ILE LEU THR CYS LEU SER CYS THR PHE SEQRES 13 A 555 LEU PRO SER ARG GLY ILE LEU LYS TYR LEU LYS PHE HIS SEQRES 14 A 555 LEU LYS ARG ILE ARG GLU GLN PHE PRO GLY THR GLU MET SEQRES 15 A 555 GLU LYS TYR ALA LEU PHE THR TYR GLU SER LEU LYS LYS SEQRES 16 A 555 THR LYS CYS ARG GLU PHE VAL PRO SER ARG ASP GLU ILE SEQRES 17 A 555 GLU ALA LEU ILE HIS ARG GLN GLU MET THR SER THR VAL SEQRES 18 A 555 TYR CYS HIS GLY GLY GLY SER CYS LYS ILE THR ILE ASN SEQRES 19 A 555 SER HIS THR THR ALA GLY GLU VAL VAL GLU LYS LEU ILE SEQRES 20 A 555 ARG GLY LEU ALA MET GLU ASP SER ARG ASN MET PHE ALA SEQRES 21 A 555 LEU PHE GLU TYR ASN GLY HIS VAL ASP LYS ALA ILE GLU SEQRES 22 A 555 SER ARG THR VAL VAL ALA ASP VAL LEU ALA LYS PHE GLU SEQRES 23 A 555 LYS LEU ALA ALA THR SER GLU VAL GLY ASP LEU PRO TRP SEQRES 24 A 555 LYS PHE TYR PHE LYS LEU TYR CYS PHE LEU ASP THR ASP SEQRES 25 A 555 ASN VAL PRO LYS ASP SER VAL GLU PHE ALA PHE MET PHE SEQRES 26 A 555 GLU GLN ALA HIS GLU ALA VAL ILE HIS GLY HIS HIS PRO SEQRES 27 A 555 ALA PRO GLU GLU ASN LEU GLN VAL LEU ALA ALA LEU ARG SEQRES 28 A 555 LEU GLN TYR LEU GLN GLY ASP TYR THR LEU HIS ALA ALA SEQRES 29 A 555 ILE PRO PRO LEU GLU GLU VAL TYR SER LEU GLN ARG LEU SEQRES 30 A 555 LYS ALA ARG ILE SER GLN SER THR LYS THR PHE SER PHE SEQRES 31 A 555 ARG THR GLY SER VAL VAL ARG GLN LYS VAL GLU GLU GLU SEQRES 32 A 555 GLN MET LEU ASP MET TRP ILE LYS GLU GLU VAL SER SER SEQRES 33 A 555 ALA ARG ALA SER ILE ILE ASP LYS TRP ARG LYS PHE GLN SEQRES 34 A 555 GLY MET ASN GLN GLU GLN ALA MET ALA LYS TYR MET ALA SEQRES 35 A 555 LEU ILE LYS GLU TRP PRO GLY TYR GLY SER THR LEU PHE SEQRES 36 A 555 ASP VAL GLU CYS LYS GLU GLY GLY PHE PRO GLN GLU LEU SEQRES 37 A 555 TRP LEU GLY VAL SER ALA ASP ALA VAL SER VAL TYR LYS SEQRES 38 A 555 ARG GLY GLU GLY ARG PRO LEU GLU VAL PHE GLN TYR GLU SEQRES 39 A 555 HIS ILE LEU SER PHE GLY ALA PRO LEU ALA ASN THR TYR SEQRES 40 A 555 LYS ILE VAL VAL ASP GLU ARG GLU LEU LEU PHE GLU THR SEQRES 41 A 555 SER GLU VAL VAL ASP VAL ALA LYS LEU MET LYS ALA TYR SEQRES 42 A 555 ILE SER MET ILE VAL LYS LYS ARG TYR SER THR THR ARG SEQRES 43 A 555 SER ALA SER SER GLN GLY SER SER ARG SEQRES 1 B 555 GLY PRO THR ARG TRP SER SER ALA ILE GLN ASN VAL THR SEQRES 2 B 555 ASP THR LYS ALA PRO ILE ASP THR PRO THR GLN GLN LEU SEQRES 3 B 555 ILE GLN ASP ILE LYS GLU ASN CYS LEU ASN SER ASP VAL SEQRES 4 B 555 VAL GLU GLN ILE TYR LYS ARG ASN PRO ILE LEU ARG TYR SEQRES 5 B 555 THR HIS HIS PRO LEU HIS SER PRO LEU LEU PRO LEU PRO SEQRES 6 B 555 TYR GLY ASP ILE ASN LEU ASN LEU LEU LYS ASP LYS GLY SEQRES 7 B 555 TYR THR THR LEU GLN ASP GLU ALA ILE LYS ILE PHE ASN SEQRES 8 B 555 SER LEU GLN GLN LEU GLU SER MET SER ASP PRO ILE PRO SEQRES 9 B 555 ILE ILE GLN GLY ILE LEU GLN THR GLY HIS ASP LEU ARG SEQRES 10 B 555 PRO LEU ARG ASP GLU LEU TYR CYS GLN LEU ILE LYS GLN SEQRES 11 B 555 THR ASN LYS VAL PRO HIS PRO GLY SER VAL GLY ASN LEU SEQRES 12 B 555 TYR SER TRP GLN ILE LEU THR CYS LEU SER CYS THR PHE SEQRES 13 B 555 LEU PRO SER ARG GLY ILE LEU LYS TYR LEU LYS PHE HIS SEQRES 14 B 555 LEU LYS ARG ILE ARG GLU GLN PHE PRO GLY THR GLU MET SEQRES 15 B 555 GLU LYS TYR ALA LEU PHE THR TYR GLU SER LEU LYS LYS SEQRES 16 B 555 THR LYS CYS ARG GLU PHE VAL PRO SER ARG ASP GLU ILE SEQRES 17 B 555 GLU ALA LEU ILE HIS ARG GLN GLU MET THR SER THR VAL SEQRES 18 B 555 TYR CYS HIS GLY GLY GLY SER CYS LYS ILE THR ILE ASN SEQRES 19 B 555 SER HIS THR THR ALA GLY GLU VAL VAL GLU LYS LEU ILE SEQRES 20 B 555 ARG GLY LEU ALA MET GLU ASP SER ARG ASN MET PHE ALA SEQRES 21 B 555 LEU PHE GLU TYR ASN GLY HIS VAL ASP LYS ALA ILE GLU SEQRES 22 B 555 SER ARG THR VAL VAL ALA ASP VAL LEU ALA LYS PHE GLU SEQRES 23 B 555 LYS LEU ALA ALA THR SER GLU VAL GLY ASP LEU PRO TRP SEQRES 24 B 555 LYS PHE TYR PHE LYS LEU TYR CYS PHE LEU ASP THR ASP SEQRES 25 B 555 ASN VAL PRO LYS ASP SER VAL GLU PHE ALA PHE MET PHE SEQRES 26 B 555 GLU GLN ALA HIS GLU ALA VAL ILE HIS GLY HIS HIS PRO SEQRES 27 B 555 ALA PRO GLU GLU ASN LEU GLN VAL LEU ALA ALA LEU ARG SEQRES 28 B 555 LEU GLN TYR LEU GLN GLY ASP TYR THR LEU HIS ALA ALA SEQRES 29 B 555 ILE PRO PRO LEU GLU GLU VAL TYR SER LEU GLN ARG LEU SEQRES 30 B 555 LYS ALA ARG ILE SER GLN SER THR LYS THR PHE SER PHE SEQRES 31 B 555 ARG THR GLY SER VAL VAL ARG GLN LYS VAL GLU GLU GLU SEQRES 32 B 555 GLN MET LEU ASP MET TRP ILE LYS GLU GLU VAL SER SER SEQRES 33 B 555 ALA ARG ALA SER ILE ILE ASP LYS TRP ARG LYS PHE GLN SEQRES 34 B 555 GLY MET ASN GLN GLU GLN ALA MET ALA LYS TYR MET ALA SEQRES 35 B 555 LEU ILE LYS GLU TRP PRO GLY TYR GLY SER THR LEU PHE SEQRES 36 B 555 ASP VAL GLU CYS LYS GLU GLY GLY PHE PRO GLN GLU LEU SEQRES 37 B 555 TRP LEU GLY VAL SER ALA ASP ALA VAL SER VAL TYR LYS SEQRES 38 B 555 ARG GLY GLU GLY ARG PRO LEU GLU VAL PHE GLN TYR GLU SEQRES 39 B 555 HIS ILE LEU SER PHE GLY ALA PRO LEU ALA ASN THR TYR SEQRES 40 B 555 LYS ILE VAL VAL ASP GLU ARG GLU LEU LEU PHE GLU THR SEQRES 41 B 555 SER GLU VAL VAL ASP VAL ALA LYS LEU MET LYS ALA TYR SEQRES 42 B 555 ILE SER MET ILE VAL LYS LYS ARG TYR SER THR THR ARG SEQRES 43 B 555 SER ALA SER SER GLN GLY SER SER ARG FORMUL 3 HOH *94(H2 O) HELIX 1 1 THR A 1504 GLU A 1515 1 12 HELIX 2 2 ASN A 1519 ARG A 1529 1 11 HELIX 3 3 ASN A 1530 ARG A 1534 5 5 HELIX 4 4 ASN A 1553 LYS A 1560 1 8 HELIX 5 5 THR A 1564 LEU A 1576 1 13 HELIX 6 6 PRO A 1585 LEU A 1599 1 15 HELIX 7 7 PRO A 1601 THR A 1614 1 14 HELIX 8 8 SER A 1622 CYS A 1637 1 16 HELIX 9 9 SER A 1642 PHE A 1660 1 19 HELIX 10 10 THR A 1663 LYS A 1677 1 15 HELIX 11 11 SER A 1687 HIS A 1696 1 10 HELIX 12 12 THR A 1721 LEU A 1733 1 13 HELIX 13 13 VAL A 1760 THR A 1774 1 15 HELIX 14 14 SER A 1801 ILE A 1816 1 16 HELIX 15 15 PRO A 1823 GLY A 1840 1 18 HELIX 16 16 PRO A 1850 VAL A 1854 5 5 HELIX 17 17 LEU A 1857 ARG A 1863 1 7 HELIX 18 18 ILE A 1913 LYS A 1930 1 18 HELIX 19 19 ASN A 1935 LYS A 1948 1 14 HELIX 20 20 GLU A 2025 THR A 2047 1 23 HELIX 21 21 THR B 1504 GLU B 1515 1 12 HELIX 22 22 ASN B 1519 ASN B 1530 1 12 HELIX 23 23 PRO B 1531 ARG B 1534 5 4 HELIX 24 24 THR B 1564 GLN B 1578 1 15 HELIX 25 25 PRO B 1585 LEU B 1599 1 15 HELIX 26 26 PRO B 1601 THR B 1614 1 14 HELIX 27 27 SER B 1622 SER B 1636 1 15 HELIX 28 28 SER B 1642 PHE B 1660 1 19 HELIX 29 29 THR B 1663 THR B 1679 1 17 HELIX 30 30 SER B 1687 HIS B 1696 1 10 HELIX 31 31 THR B 1721 ARG B 1731 1 11 HELIX 32 32 VAL B 1760 ALA B 1772 1 13 HELIX 33 33 SER B 1801 HIS B 1817 1 17 HELIX 34 34 PRO B 1823 GLY B 1840 1 18 HELIX 35 35 PRO B 1850 VAL B 1854 5 5 HELIX 36 36 MET B 1911 LYS B 1930 1 20 HELIX 37 37 ASN B 1935 LYS B 1948 1 14 HELIX 38 38 GLU B 1997 ILE B 1999 5 3 HELIX 39 39 GLU B 2025 SER B 2046 1 22 SHEET 1 A 5 GLY A1710 ILE A1716 0 SHEET 2 A 5 MET A1700 CYS A1706 -1 N MET A1700 O ILE A1716 SHEET 3 A 5 LYS A1783 CYS A1790 1 O PHE A1786 N TYR A1705 SHEET 4 A 5 MET A1741 TYR A1747 -1 N MET A1741 O TYR A1789 SHEET 5 A 5 ASP A1752 ALA A1754 -1 O LYS A1753 N GLU A1746 SHEET 1 B 7 GLU A1992 GLN A1995 0 SHEET 2 B 7 ALA A1979 LYS A1984 -1 N VAL A1982 O GLU A1992 SHEET 3 B 7 GLU A1970 SER A1976 -1 N SER A1976 O ALA A1979 SHEET 4 B 7 THR A1956 GLU A1964 -1 N PHE A1958 O LEU A1973 SHEET 5 B 7 ARG A2017 GLU A2022 -1 O GLU A2022 N GLU A1961 SHEET 6 B 7 THR A2009 VAL A2014 -1 N TYR A2010 O PHE A2021 SHEET 7 B 7 ILE A1999 LEU A2006 -1 N GLY A2003 O LYS A2011 SHEET 1 C 4 GLY B1710 ILE B1716 0 SHEET 2 C 4 MET B1700 CYS B1706 -1 N VAL B1704 O CYS B1712 SHEET 3 C 4 LYS B1783 CYS B1790 1 O PHE B1784 N TYR B1705 SHEET 4 C 4 MET B1741 TYR B1747 -1 N MET B1741 O TYR B1789 SHEET 1 D 7 GLU B1992 GLN B1995 0 SHEET 2 D 7 ALA B1979 TYR B1983 -1 N VAL B1982 O GLU B1992 SHEET 3 D 7 GLU B1970 VAL B1975 -1 N GLY B1974 O SER B1981 SHEET 4 D 7 THR B1956 CYS B1962 -1 N PHE B1958 O LEU B1973 SHEET 5 D 7 LEU B2019 GLU B2022 -1 O GLU B2022 N GLU B1961 SHEET 6 D 7 THR B2009 VAL B2013 -1 N TYR B2010 O PHE B2021 SHEET 7 D 7 SER B2001 LEU B2006 -1 N LEU B2006 O THR B2009 CRYST1 85.565 49.313 158.407 90.00 93.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011687 0.000000 0.000731 0.00000 SCALE2 0.000000 0.020279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006325 0.00000