PDB Short entry for 3AVS
HEADER    OXIDOREDUCTASE                          07-MAR-11   3AVS              
TITLE     CATALYTIC FRAGMENT OF UTX/KDM6A BOUND WITH N-OXYALYLGLYCINE, AND      
TITLE    2 NI(II)                                                               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 6A;                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 880-1401;                                     
COMPND   5 SYNONYM: HISTONE DEMETHYLASE UTX, UBIQUITOUSLY-TRANSCRIBED TPR       
COMPND   6 PROTEIN ON THE X CHROMOSOME, UBIQUITOUSLY-TRANSCRIBED X CHROMOSOME   
COMPND   7 TETRATRICOPEPTIDE REPEAT PROTEIN;                                    
COMPND   8 EC: 1.14.11.-;                                                       
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: KDM6A, UTX;                                                    
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET47                                     
KEYWDS    CUPIN SUPERFAMILY, TRI/DIMETHYLLYSINE DEMETHYLASE, OXIDOREDUCTASE     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    T.SENGOKU,S.YOKOYAMA                                                  
REVDAT   2   14-DEC-11 3AVS    1       JRNL                                     
REVDAT   1   19-OCT-11 3AVS    0                                                
JRNL        AUTH   T.SENGOKU,S.YOKOYAMA                                         
JRNL        TITL   STRUCTURAL BASIS FOR HISTONE H3 LYS 27 DEMETHYLATION BY      
JRNL        TITL 2 UTX/KDM6A                                                    
JRNL        REF    GENES DEV.                    V.  25  2266 2011              
JRNL        REFN                   ISSN 0890-9369                               
JRNL        PMID   22002947                                                     
JRNL        DOI    10.1101/GAD.172296.111                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.85 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.7_650)                      
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN             
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-                     
REMARK   3               : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO,              
REMARK   3               : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL            
REMARK   3               : MORIARTY,REETAL PAI,RANDY READ,JANE                  
REMARK   3               : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM             
REMARK   3               : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH,             
REMARK   3               : LAURENT STORONI,TOM TERWILLIGER,PETER                
REMARK   3               : ZWART                                                
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 30.07                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.330                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : NULL                           
REMARK   3   NUMBER OF REFLECTIONS             : 50150                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.184                           
REMARK   3   R VALUE            (WORKING SET) : 0.183                           
REMARK   3   FREE R VALUE                     : 0.218                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.140                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2578                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 30.0698 -  4.8424    0.96     2875   139  0.1789 0.1817        
REMARK   3     2  4.8424 -  3.8461    0.99     2827   155  0.1409 0.1707        
REMARK   3     3  3.8461 -  3.3606    0.99     2773   165  0.1764 0.2164        
REMARK   3     4  3.3606 -  3.0537    0.99     2783   142  0.1900 0.2301        
REMARK   3     5  3.0537 -  2.8350    1.00     2766   138  0.1832 0.2250        
REMARK   3     6  2.8350 -  2.6680    1.00     2764   161  0.1761 0.2123        
REMARK   3     7  2.6680 -  2.5344    1.00     2768   148  0.1816 0.2417        
REMARK   3     8  2.5344 -  2.4241    1.00     2762   153  0.1933 0.2180        
REMARK   3     9  2.4241 -  2.3309    1.00     2757   141  0.1889 0.2472        
REMARK   3    10  2.3309 -  2.2505    1.00     2750   147  0.1898 0.2186        
REMARK   3    11  2.2505 -  2.1801    1.00     2729   146  0.1977 0.2481        
REMARK   3    12  2.1801 -  2.1178    1.00     2755   154  0.2011 0.2642        
REMARK   3    13  2.1178 -  2.0621    0.99     2711   148  0.2095 0.2584        
REMARK   3    14  2.0621 -  2.0118    0.94     2575   120  0.2203 0.2719        
REMARK   3    15  2.0118 -  1.9660    0.90     2447   139  0.2297 0.2756        
REMARK   3    16  1.9660 -  1.9242    0.84     2321   130  0.2512 0.2767        
REMARK   3    17  1.9242 -  1.8857    0.80     2176   125  0.2601 0.3139        
REMARK   3    18  1.8857 -  1.8501    0.75     2033   127  0.2683 0.3054        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.00                                          
REMARK   3   SHRINKAGE RADIUS   : 0.89                                          
REMARK   3   K_SOL              : 0.37                                          
REMARK   3   B_SOL              : 36.67                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.220            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.230           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 4.50610                                              
REMARK   3    B22 (A**2) : -1.98590                                             
REMARK   3    B33 (A**2) : -2.52020                                             
REMARK   3    B12 (A**2) : -0.00000                                             
REMARK   3    B13 (A**2) : -0.00000                                             
REMARK   3    B23 (A**2) : -0.00000                                             
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.003           4003                                  
REMARK   3   ANGLE     :  0.811           5438                                  
REMARK   3   CHIRALITY :  0.050            588                                  
REMARK   3   PLANARITY :  0.003            702                                  
REMARK   3   DIHEDRAL  : 14.554           1485                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 3                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: chain 'A' and (resseq 886:927)                         
REMARK   3    ORIGIN FOR THE GROUP (A):  41.4617 -26.0816  14.0518              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.7187 T22:   0.2973                                     
REMARK   3      T33:   0.2596 T12:   0.1072                                     
REMARK   3      T13:  -0.0492 T23:   0.0183                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.3761 L22:   0.1384                                     
REMARK   3      L33:   0.0718 L12:   0.0765                                     
REMARK   3      L13:  -0.0132 L23:  -0.0959                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.2507 S12:  -0.0086 S13:  -0.0557                       
REMARK   3      S21:   0.1703 S22:  -0.1058 S23:  -0.0344                       
REMARK   3      S31:   0.0126 S32:  -0.0047 S33:  -0.0434                       
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    SELECTION: chain 'A' and (resseq 928:1261)                        
REMARK   3    ORIGIN FOR THE GROUP (A):  24.3796   6.7336  14.5248              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1617 T22:   0.1969                                     
REMARK   3      T33:   0.1843 T12:   0.0012                                     
REMARK   3      T13:  -0.0073 T23:  -0.0073                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.2493 L22:   1.1060                                     
REMARK   3      L33:   1.3276 L12:   0.0310                                     
REMARK   3      L13:   0.0869 L23:   0.2929                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0395 S12:  -0.0011 S13:  -0.0247                       
REMARK   3      S21:  -0.0018 S22:  -0.0865 S23:  -0.0389                       
REMARK   3      S31:  -0.0843 S32:  -0.1272 S33:   0.0598                       
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    SELECTION: chain 'A' and (resseq 1262:1395)                       
REMARK   3    ORIGIN FOR THE GROUP (A):  37.6221 -18.1879  -0.6569              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.2742 T22:   0.2518                                     
REMARK   3      T33:   0.2272 T12:   0.0450                                     
REMARK   3      T13:  -0.0215 T23:   0.0120                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   1.2205 L22:   0.4318                                     
REMARK   3      L33:   0.7909 L12:  -0.1041                                     
REMARK   3      L13:   0.5120 L23:  -0.0783                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0938 S12:   0.2727 S13:   0.1851                       
REMARK   3      S21:   0.0497 S22:  -0.1373 S23:  -0.0171                       
REMARK   3      S31:   0.3518 S32:   0.1216 S33:   0.0015                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3AVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-11.                  
REMARK 100 THE RCSB ID CODE IS RCSB029756.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 17-JUL-10                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SPRING-8                           
REMARK 200  BEAMLINE                       : BL41XU                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1                                  
REMARK 200  MONOCHROMATOR                  : DOUBLE SI(111) CRYSTALS            
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : RAYONIX MX225HE                    
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 50265                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.850                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 95.4                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.88                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 75.3                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD                          
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 51.19                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL (PH 8.5), 0.2M LI2SO4,     
REMARK 280  18-20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       39.43600            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       46.46150            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       41.43950            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       46.46150            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       39.43600            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       41.43950            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A   871                                                      
REMARK 465     PRO A   872                                                      
REMARK 465     GLY A   873                                                      
REMARK 465     TYR A   874                                                      
REMARK 465     GLN A   875                                                      
REMARK 465     ASP A   876                                                      
REMARK 465     PRO A   877                                                      
REMARK 465     ASN A   878                                                      
REMARK 465     SER A   879                                                      
REMARK 465     GLN A   880                                                      
REMARK 465     ILE A   881                                                      
REMARK 465     ILE A   882                                                      
REMARK 465     PRO A   883                                                      
REMARK 465     SER A   884                                                      
REMARK 465     MET A   885                                                      
REMARK 465     LEU A   903                                                      
REMARK 465     GLY A   904                                                      
REMARK 465     LYS A   905                                                      
REMARK 465     ASN A   906                                                      
REMARK 465     GLY A   907                                                      
REMARK 465     LEU A   908                                                      
REMARK 465     SER A   909                                                      
REMARK 465     GLU A  1049                                                      
REMARK 465     GLU A  1050                                                      
REMARK 465     ASN A  1051                                                      
REMARK 465     GLU A  1052                                                      
REMARK 465     LYS A  1053                                                      
REMARK 465     ARG A  1054                                                      
REMARK 465     SER A  1055                                                      
REMARK 465     HIS A  1056                                                      
REMARK 465     HIS A  1057                                                      
REMARK 465     LYS A  1058                                                      
REMARK 465     ASP A  1059                                                      
REMARK 465     HIS A  1060                                                      
REMARK 465     SER A  1061                                                      
REMARK 465     ASP A  1062                                                      
REMARK 465     SER A  1063                                                      
REMARK 465     GLU A  1064                                                      
REMARK 465     SER A  1065                                                      
REMARK 465     THR A  1066                                                      
REMARK 465     SER A  1067                                                      
REMARK 465     SER A  1068                                                      
REMARK 465     ASP A  1069                                                      
REMARK 465     ASN A  1070                                                      
REMARK 465     SER A  1071                                                      
REMARK 465     GLY A  1072                                                      
REMARK 465     ARG A  1073                                                      
REMARK 465     ARG A  1074                                                      
REMARK 465     ARG A  1075                                                      
REMARK 465     LYS A  1076                                                      
REMARK 465     GLY A  1077                                                      
REMARK 465     LEU A  1396                                                      
REMARK 465     PRO A  1397                                                      
REMARK 465     SER A  1398                                                      
REMARK 465     ALA A  1399                                                      
REMARK 465     SER A  1400                                                      
REMARK 465     SER A  1401                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    ALA A  1393     O    HOH A   322              2.13            
REMARK 500   O    HOH A   168     O    HOH A   232              2.16            
REMARK 500   OE2  GLU A  1326     O    HOH A   215              2.18            
REMARK 500   O    HOH A   221     O    HOH A   226              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PRO A 927      152.89    -49.85                                   
REMARK 500    GLU A 946      -45.95   -130.52                                   
REMARK 500    ALA A1008     -123.39     48.24                                   
REMARK 500    MET A1129      -61.89   -104.73                                   
REMARK 500    ILE A1333      -61.02    -95.35                                   
REMARK 500    ASP A1340      -37.83     79.29                                   
REMARK 500    TYR A1354       65.17     38.25                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A 325        DISTANCE =  6.03 ANGSTROMS                       
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              NI A1503  NI                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLU A1148   OE2                                                    
REMARK 620 2 HIS A1226   NE2  81.6                                              
REMARK 620 3 HOH A 276   O    87.9 168.6                                        
REMARK 620 4 HIS A1146   NE2  94.8  86.0  90.6                                  
REMARK 620 5 OGA A1501   O2   95.1  94.9  90.3 170.1                            
REMARK 620 6 OGA A1501   O2' 171.8 102.4  88.6  92.7  77.5                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A1502  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A1358   SG                                                     
REMARK 620 2 CYS A1334   SG  110.0                                              
REMARK 620 3 CYS A1331   SG  112.5 111.3                                        
REMARK 620 4 CYS A1361   SG  104.4 112.0 106.5                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OGA A 1501                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1502                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1503                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1504                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1505                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1506                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1507                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1508                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC9                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1509                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1510                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1511                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1512                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1513                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1514                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1515                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1516                
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3AVR   RELATED DB: PDB                                   
REMARK 900 THE H3-BOUND STRUCTURE                                               
DBREF  3AVS A  880  1401  UNP    O15550   KDM6A_HUMAN    880   1401             
SEQADV 3AVS GLY A  871  UNP  O15550              EXPRESSION TAG                 
SEQADV 3AVS PRO A  872  UNP  O15550              EXPRESSION TAG                 
SEQADV 3AVS GLY A  873  UNP  O15550              EXPRESSION TAG                 
SEQADV 3AVS TYR A  874  UNP  O15550              EXPRESSION TAG                 
SEQADV 3AVS GLN A  875  UNP  O15550              EXPRESSION TAG                 
SEQADV 3AVS ASP A  876  UNP  O15550              EXPRESSION TAG                 
SEQADV 3AVS PRO A  877  UNP  O15550              EXPRESSION TAG                 
SEQADV 3AVS ASN A  878  UNP  O15550              EXPRESSION TAG                 
SEQADV 3AVS SER A  879  UNP  O15550              EXPRESSION TAG                 
SEQRES   1 A  531  GLY PRO GLY TYR GLN ASP PRO ASN SER GLN ILE ILE PRO          
SEQRES   2 A  531  SER MET SER VAL SER ILE TYR PRO SER SER ALA GLU VAL          
SEQRES   3 A  531  LEU LYS ALA CYS ARG ASN LEU GLY LYS ASN GLY LEU SER          
SEQRES   4 A  531  ASN SER SER ILE LEU LEU ASP LYS CYS PRO PRO PRO ARG          
SEQRES   5 A  531  PRO PRO SER SER PRO TYR PRO PRO LEU PRO LYS ASP LYS          
SEQRES   6 A  531  LEU ASN PRO PRO THR PRO SER ILE TYR LEU GLU ASN LYS          
SEQRES   7 A  531  ARG ASP ALA PHE PHE PRO PRO LEU HIS GLN PHE CYS THR          
SEQRES   8 A  531  ASN PRO ASN ASN PRO VAL THR VAL ILE ARG GLY LEU ALA          
SEQRES   9 A  531  GLY ALA LEU LYS LEU ASP LEU GLY LEU PHE SER THR LYS          
SEQRES  10 A  531  THR LEU VAL GLU ALA ASN ASN GLU HIS MET VAL GLU VAL          
SEQRES  11 A  531  ARG THR GLN LEU LEU GLN PRO ALA ASP GLU ASN TRP ASP          
SEQRES  12 A  531  PRO THR GLY THR LYS LYS ILE TRP HIS CYS GLU SER ASN          
SEQRES  13 A  531  ARG SER HIS THR THR ILE ALA LYS TYR ALA GLN TYR GLN          
SEQRES  14 A  531  ALA SER SER PHE GLN GLU SER LEU ARG GLU GLU ASN GLU          
SEQRES  15 A  531  LYS ARG SER HIS HIS LYS ASP HIS SER ASP SER GLU SER          
SEQRES  16 A  531  THR SER SER ASP ASN SER GLY ARG ARG ARG LYS GLY PRO          
SEQRES  17 A  531  PHE LYS THR ILE LYS PHE GLY THR ASN ILE ASP LEU SER          
SEQRES  18 A  531  ASP ASP LYS LYS TRP LYS LEU GLN LEU HIS GLU LEU THR          
SEQRES  19 A  531  LYS LEU PRO ALA PHE VAL ARG VAL VAL SER ALA GLY ASN          
SEQRES  20 A  531  LEU LEU SER HIS VAL GLY HIS THR ILE LEU GLY MET ASN          
SEQRES  21 A  531  THR VAL GLN LEU TYR MET LYS VAL PRO GLY SER ARG THR          
SEQRES  22 A  531  PRO GLY HIS GLN GLU ASN ASN ASN PHE CYS SER VAL ASN          
SEQRES  23 A  531  ILE ASN ILE GLY PRO GLY ASP CYS GLU TRP PHE VAL VAL          
SEQRES  24 A  531  PRO GLU GLY TYR TRP GLY VAL LEU ASN ASP PHE CYS GLU          
SEQRES  25 A  531  LYS ASN ASN LEU ASN PHE LEU MET GLY SER TRP TRP PRO          
SEQRES  26 A  531  ASN LEU GLU ASP LEU TYR GLU ALA ASN VAL PRO VAL TYR          
SEQRES  27 A  531  ARG PHE ILE GLN ARG PRO GLY ASP LEU VAL TRP ILE ASN          
SEQRES  28 A  531  ALA GLY THR VAL HIS TRP VAL GLN ALA ILE GLY TRP CYS          
SEQRES  29 A  531  ASN ASN ILE ALA TRP ASN VAL GLY PRO LEU THR ALA CYS          
SEQRES  30 A  531  GLN TYR LYS LEU ALA VAL GLU ARG TYR GLU TRP ASN LYS          
SEQRES  31 A  531  LEU GLN SER VAL LYS SER ILE VAL PRO MET VAL HIS LEU          
SEQRES  32 A  531  SER TRP ASN MET ALA ARG ASN ILE LYS VAL SER ASP PRO          
SEQRES  33 A  531  LYS LEU PHE GLU MET ILE LYS TYR CYS LEU LEU ARG THR          
SEQRES  34 A  531  LEU LYS GLN CYS GLN THR LEU ARG GLU ALA LEU ILE ALA          
SEQRES  35 A  531  ALA GLY LYS GLU ILE ILE TRP HIS GLY ARG THR LYS GLU          
SEQRES  36 A  531  GLU PRO ALA HIS TYR CYS SER ILE CYS GLU VAL GLU VAL          
SEQRES  37 A  531  PHE ASP LEU LEU PHE VAL THR ASN GLU SER ASN SER ARG          
SEQRES  38 A  531  LYS THR TYR ILE VAL HIS CYS GLN ASP CYS ALA ARG LYS          
SEQRES  39 A  531  THR SER GLY ASN LEU GLU ASN PHE VAL VAL LEU GLU GLN          
SEQRES  40 A  531  TYR LYS MET GLU ASP LEU MET GLN VAL TYR ASP GLN PHE          
SEQRES  41 A  531  THR LEU ALA PRO PRO LEU PRO SER ALA SER SER                  
HET    OGA  A1501      13                                                       
HET     ZN  A1502       1                                                       
HET     NI  A1503       1                                                       
HET     NI  A1504       1                                                       
HET     NI  A1505       1                                                       
HET     CL  A1506       1                                                       
HET    EDO  A1507      10                                                       
HET    EDO  A1508      10                                                       
HET    EDO  A1509      10                                                       
HET    EDO  A1510      10                                                       
HET    EDO  A1511      10                                                       
HET    EDO  A1512      10                                                       
HET    EDO  A1513      10                                                       
HET    EDO  A1514      10                                                       
HET    EDO  A1515      10                                                       
HET    EDO  A1516      10                                                       
HETNAM     OGA N-OXALYLGLYCINE                                                  
HETNAM      ZN ZINC ION                                                         
HETNAM      NI NICKEL (II) ION                                                  
HETNAM      CL CHLORIDE ION                                                     
HETNAM     EDO 1,2-ETHANEDIOL                                                   
HETSYN     EDO ETHYLENE GLYCOL                                                  
FORMUL   2  OGA    C4 H5 N O5                                                   
FORMUL   3   ZN    ZN 2+                                                        
FORMUL   4   NI    3(NI 2+)                                                     
FORMUL   7   CL    CL 1-                                                        
FORMUL   8  EDO    10(C2 H6 O2)                                                 
FORMUL  18  HOH   *344(H2 O)                                                    
HELIX    1   1 SER A  892  ARG A  901  1                                  10    
HELIX    2   2 PRO A  932  LEU A  936  5                                   5    
HELIX    3   3 ASN A  947  PHE A  952  1                                   6    
HELIX    4   4 PRO A  954  ASN A  962  1                                   9    
HELIX    5   5 GLY A  972  LYS A  978  1                                   7    
HELIX    6   6 ASP A  980  PHE A  984  5                                   5    
HELIX    7   7 SER A  985  ASN A  994  1                                  10    
HELIX    8   8 ILE A 1032  LEU A 1047  1                                  16    
HELIX    9   9 TRP A 1096  LEU A 1103  1                                   8    
HELIX   10  10 THR A 1104  LEU A 1106  5                                   3    
HELIX   11  11 PRO A 1107  ARG A 1111  5                                   5    
HELIX   12  12 ASN A 1117  VAL A 1122  5                                   6    
HELIX   13  13 GLU A 1148  PHE A 1152  5                                   5    
HELIX   14  14 PRO A 1170  GLY A 1172  5                                   3    
HELIX   15  15 TYR A 1173  ASN A 1184  1                                  12    
HELIX   16  16 ASN A 1196  ALA A 1203  1                                   8    
HELIX   17  17 THR A 1245  GLN A 1262  1                                  18    
HELIX   18  18 PRO A 1269  ILE A 1281  1                                  13    
HELIX   19  19 ASP A 1285  ALA A 1313  1                                  29    
HELIX   20  20 ASN A 1346  ARG A 1351  1                                   6    
HELIX   21  21 CYS A 1358  SER A 1366  1                                   9    
HELIX   22  22 LYS A 1379  PHE A 1390  1                                  12    
SHEET    1   A 9 SER A 942  TYR A 944  0                                        
SHEET    2   A 9 VAL A 967  ARG A 971  1  O  ARG A 971   N  ILE A 943           
SHEET    3   A 9 LEU A1217  ILE A1220 -1  O  LEU A1217   N  ILE A 970           
SHEET    4   A 9 CYS A1153  PRO A1161 -1  N  ASN A1156   O  VAL A1218           
SHEET    5   A 9 CYS A1234  VAL A1241 -1  O  ASN A1235   N  ILE A1159           
SHEET    6   A 9 GLN A1133  LYS A1137 -1  N  TYR A1135   O  ASN A1236           
SHEET    7   A 9 THR A1081  ASP A1089 -1  N  GLY A1085   O  MET A1136           
SHEET    8   A 9 MET A 997  LEU A1004 -1  N  GLU A 999   O  THR A1086           
SHEET    9   A 9 ASN A1026  THR A1031 -1  O  SER A1028   N  VAL A1000           
SHEET    1   B 4 ARG A1142  HIS A1146  0                                        
SHEET    2   B 4 VAL A1225  ALA A1230 -1  O  VAL A1228   N  THR A1143           
SHEET    3   B 4 CYS A1164  VAL A1169 -1  N  GLU A1165   O  GLN A1229           
SHEET    4   B 4 TYR A1208  GLN A1212 -1  O  GLN A1212   N  CYS A1164           
SHEET    1   C 3 ILE A1318  TRP A1319  0                                        
SHEET    2   C 3 PHE A1372  GLU A1376  1  O  GLU A1376   N  ILE A1318           
SHEET    3   C 3 LEU A1341  THR A1345 -1  N  VAL A1344   O  VAL A1373           
SHEET    1   D 2 HIS A1329  TYR A1330  0                                        
SHEET    2   D 2 GLU A1337  VAL A1338 -1  O  VAL A1338   N  HIS A1329           
LINK         OE2 GLU A1148                NI    NI A1503     1555   1555  2.11  
LINK         NE2 HIS A1226                NI    NI A1503     1555   1555  2.19  
LINK        NI    NI A1503                 O   HOH A 276     1555   1555  2.20  
LINK         NE2 HIS A1146                NI    NI A1503     1555   1555  2.24  
LINK         O2  OGA A1501                NI    NI A1503     1555   1555  2.24  
LINK         O2' OGA A1501                NI    NI A1503     1555   1555  2.24  
LINK         SG  CYS A1358                ZN    ZN A1502     1555   1555  2.31  
LINK         SG  CYS A1334                ZN    ZN A1502     1555   1555  2.38  
LINK         SG  CYS A1331                ZN    ZN A1502     1555   1555  2.39  
LINK         SG  CYS A1361                ZN    ZN A1502     1555   1555  2.43  
LINK         NE2 HIS A1320                NI    NI A1504     1555   1555  2.74  
CISPEP   1 TYR A  928    PRO A  929          0         2.42                     
CISPEP   2 GLY A 1160    PRO A 1161          0         4.31                     
SITE     1 AC1 11 HOH A   7  LYS A1137  THR A1143  HIS A1146                    
SITE     2 AC1 11 GLU A1148  SER A1154  ASN A1156  TRP A1166                    
SITE     3 AC1 11 HIS A1226  ALA A1238   NI A1503                               
SITE     1 AC2  4 CYS A1331  CYS A1334  CYS A1358  CYS A1361                    
SITE     1 AC3  5 HOH A 276  HIS A1146  GLU A1148  HIS A1226                    
SITE     2 AC3  5 OGA A1501                                                     
SITE     1 AC4  2 HOH A 215  HIS A1320                                          
SITE     1 AC5  1 HIS A1101                                                     
SITE     1 AC6  1 ARG A1027                                                     
SITE     1 AC7  2 HOH A 233  HIS A1121                                          
SITE     1 AC8  4 VAL A1253  GLU A1257  CYS A1295  ARG A1298                    
SITE     1 AC9  2 TYR A 928  EDO A1510                                          
SITE     1 BC1  6 HOH A 317  THR A1030  LYS A1034  TYR A1035                    
SITE     2 BC1  6 LYS A1083  EDO A1509                                          
SITE     1 BC2  4 HOH A  35  HOH A 211  ARG A1213  PRO A1214                    
SITE     1 BC3  3 HOH A 176  HOH A 306  GLU A 946                               
SITE     1 BC4  6 HOH A 190  LEU A 981  GLY A 982  SER A 985                    
SITE     2 BC4  6 ILE A1159  EDO A1514                                          
SITE     1 BC5 10 HOH A 107  HOH A 278  SER A 985  THR A 986                    
SITE     2 BC5 10 GLN A1039  GLY A1160  PRO A1161  CYS A1234                    
SITE     3 BC5 10 ASN A1235  EDO A1513                                          
SITE     1 BC6  7 HOH A  12  HOH A  84  HOH A 165  HOH A 219                    
SITE     2 BC6  7 ILE A 889  PRO A 891  ARG A 971                               
SITE     1 BC7  5 HOH A 309  ALA A1108  ARG A1111  SER A1114                    
SITE     2 BC7  5 ALA A1115                                                     
CRYST1   78.872   82.879   92.923  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.012679  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.012066  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.010762        0.00000