PDB Short entry for 3AX3 HEADER MEMBRANE PROTEIN/TRANSPORT PROTEIN 28-MAR-11 3AX3 TITLE CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX: A COMPLEX TITLE 2 (FORM2) BETWEEN TOM20 AND A DISULFIDE-BRIDGED PRESEQUENCE PEPTIDE TITLE 3 CONTAINING D-CYS AND L-CYS AT THE I AND I+3 POSITIONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: CYTOSOLIC DOMAIN, UNP RESIDUES 59-126; COMPND 5 SYNONYM: MITOCHONDRIAL 20 KDA OUTER MEMBRANE PROTEIN, OUTER COMPND 6 MITOCHONDRIAL MEMBRANE RECEPTOR TOM20; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL; COMPND 11 CHAIN: B, D, F, H; COMPND 12 FRAGMENT: C-TERMINAL HALF, UNP RESIDUES 12-20; COMPND 13 SYNONYM: ALDH CLASS 2, ALDH-E2, ALDH1; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. KEYWDS PROTEIN-PROTEIN COMPLEX, MEMBRANE PROTEIN-TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.SAITOH,Y.MAITA,D.KOHDA REVDAT 2 01-NOV-23 3AX3 1 SEQADV LINK REVDAT 1 06-JUL-11 3AX3 0 JRNL AUTH T.SAITOH,M.IGURA,Y.MIYAZAKI,T.OSE,N.MAITA,D.KOHDA JRNL TITL CRYSTALLOGRAPHIC SNAPSHOTS OF TOM20-MITOCHONDRIAL JRNL TITL 2 PRESEQUENCE INTERACTIONS WITH DISULFIDE-STABILIZED PEPTIDES. JRNL REF BIOCHEMISTRY V. 50 5487 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21591667 JRNL DOI 10.1021/BI200470X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 20739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1127 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.173 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2488 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3352 ; 2.006 ; 2.018 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 5.240 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;39.318 ;26.491 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;19.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.279 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1836 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1556 ; 1.356 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2484 ; 2.435 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 932 ; 3.698 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 868 ; 6.251 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000029803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 MICRO-CHANNEL, INDIRECT WATER REMARK 200 COOLING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22101 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: 1WT4, 2V1T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH8.0, 0.2M MGCL2, 30% REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 49.79800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.75089 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 65.06000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 49.79800 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.75089 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 65.06000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 49.79800 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.75089 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.06000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 49.79800 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.75089 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.06000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 49.79800 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.75089 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.06000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 49.79800 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.75089 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.06000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.50178 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 130.12000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.50178 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 130.12000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.50178 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 130.12000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.50178 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 130.12000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.50178 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 130.12000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.50178 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 130.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 54 REMARK 465 PRO A 55 REMARK 465 LEU A 56 REMARK 465 GLY A 57 REMARK 465 SER A 58 REMARK 465 ASP A 59 REMARK 465 LEU A 60 REMARK 465 GLY C 54 REMARK 465 PRO C 55 REMARK 465 LEU C 56 REMARK 465 GLY C 57 REMARK 465 SER C 58 REMARK 465 ASP C 59 REMARK 465 LEU C 60 REMARK 465 GLY E 54 REMARK 465 PRO E 55 REMARK 465 LEU E 56 REMARK 465 GLY E 57 REMARK 465 SER E 58 REMARK 465 GLY G 54 REMARK 465 PRO G 55 REMARK 465 LEU G 56 REMARK 465 GLY G 57 REMARK 465 SER G 58 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN E 120 O HOH E 29 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 85 NZ LYS A 125 2565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA D 22 O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 ALA F 22 O - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 102 63.55 -115.58 REMARK 500 GLN C 102 64.42 -118.66 REMARK 500 DCY D 13 -5.88 -179.37 REMARK 500 DCY F 13 7.61 -85.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AWR RELATED DB: PDB REMARK 900 RELATED ID: 3AX2 RELATED DB: PDB REMARK 900 RELATED ID: 3AX5 RELATED DB: PDB DBREF 3AX3 A 59 126 UNP Q62760 TOM20_RAT 59 126 DBREF 3AX3 B 12 20 UNP P11884 ALDH2_RAT 12 20 DBREF 3AX3 C 59 126 UNP Q62760 TOM20_RAT 59 126 DBREF 3AX3 D 12 20 UNP P11884 ALDH2_RAT 12 20 DBREF 3AX3 E 59 126 UNP Q62760 TOM20_RAT 59 126 DBREF 3AX3 F 12 20 UNP P11884 ALDH2_RAT 12 20 DBREF 3AX3 G 59 126 UNP Q62760 TOM20_RAT 59 126 DBREF 3AX3 H 12 20 UNP P11884 ALDH2_RAT 12 20 SEQADV 3AX3 GLY A 54 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 PRO A 55 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 LEU A 56 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 GLY A 57 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 SER A 58 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 SER A 100 UNP Q62760 CYS 100 ENGINEERED MUTATION SEQADV 3AX3 DCY B 13 UNP P11884 PRO 13 ENGINEERED MUTATION SEQADV 3AX3 CYS B 16 UNP P11884 SER 16 ENGINEERED MUTATION SEQADV 3AX3 TYR B 21 UNP P11884 EXPRESSION TAG SEQADV 3AX3 ALA B 22 UNP P11884 EXPRESSION TAG SEQADV 3AX3 NH2 B 23 UNP P11884 AMIDATION SEQADV 3AX3 GLY C 54 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 PRO C 55 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 LEU C 56 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 GLY C 57 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 SER C 58 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 SER C 100 UNP Q62760 CYS 100 ENGINEERED MUTATION SEQADV 3AX3 DCY D 13 UNP P11884 PRO 13 ENGINEERED MUTATION SEQADV 3AX3 CYS D 16 UNP P11884 SER 16 ENGINEERED MUTATION SEQADV 3AX3 TYR D 21 UNP P11884 EXPRESSION TAG SEQADV 3AX3 ALA D 22 UNP P11884 EXPRESSION TAG SEQADV 3AX3 NH2 D 23 UNP P11884 AMIDATION SEQADV 3AX3 GLY E 54 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 PRO E 55 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 LEU E 56 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 GLY E 57 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 SER E 58 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 SER E 100 UNP Q62760 CYS 100 ENGINEERED MUTATION SEQADV 3AX3 DCY F 13 UNP P11884 PRO 13 ENGINEERED MUTATION SEQADV 3AX3 CYS F 16 UNP P11884 SER 16 ENGINEERED MUTATION SEQADV 3AX3 TYR F 21 UNP P11884 EXPRESSION TAG SEQADV 3AX3 ALA F 22 UNP P11884 EXPRESSION TAG SEQADV 3AX3 NH2 F 23 UNP P11884 AMIDATION SEQADV 3AX3 GLY G 54 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 PRO G 55 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 LEU G 56 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 GLY G 57 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 SER G 58 UNP Q62760 EXPRESSION TAG SEQADV 3AX3 SER G 100 UNP Q62760 CYS 100 ENGINEERED MUTATION SEQADV 3AX3 DCY H 13 UNP P11884 PRO 13 ENGINEERED MUTATION SEQADV 3AX3 CYS H 16 UNP P11884 SER 16 ENGINEERED MUTATION SEQADV 3AX3 TYR H 21 UNP P11884 EXPRESSION TAG SEQADV 3AX3 ALA H 22 UNP P11884 EXPRESSION TAG SEQADV 3AX3 NH2 H 23 UNP P11884 AMIDATION SEQRES 1 A 73 GLY PRO LEU GLY SER ASP LEU LYS ASP ALA GLU ALA VAL SEQRES 2 A 73 GLN LYS PHE PHE LEU GLU GLU ILE GLN LEU GLY GLU GLU SEQRES 3 A 73 LEU LEU ALA GLN GLY ASP TYR GLU LYS GLY VAL ASP HIS SEQRES 4 A 73 LEU THR ASN ALA ILE ALA VAL SER GLY GLN PRO GLN GLN SEQRES 5 A 73 LEU LEU GLN VAL LEU GLN GLN THR LEU PRO PRO PRO VAL SEQRES 6 A 73 PHE GLN MET LEU LEU THR LYS LEU SEQRES 1 B 12 GLY DCY ARG LEU CYS ARG LEU LEU SER TYR ALA NH2 SEQRES 1 C 73 GLY PRO LEU GLY SER ASP LEU LYS ASP ALA GLU ALA VAL SEQRES 2 C 73 GLN LYS PHE PHE LEU GLU GLU ILE GLN LEU GLY GLU GLU SEQRES 3 C 73 LEU LEU ALA GLN GLY ASP TYR GLU LYS GLY VAL ASP HIS SEQRES 4 C 73 LEU THR ASN ALA ILE ALA VAL SER GLY GLN PRO GLN GLN SEQRES 5 C 73 LEU LEU GLN VAL LEU GLN GLN THR LEU PRO PRO PRO VAL SEQRES 6 C 73 PHE GLN MET LEU LEU THR LYS LEU SEQRES 1 D 12 GLY DCY ARG LEU CYS ARG LEU LEU SER TYR ALA NH2 SEQRES 1 E 73 GLY PRO LEU GLY SER ASP LEU LYS ASP ALA GLU ALA VAL SEQRES 2 E 73 GLN LYS PHE PHE LEU GLU GLU ILE GLN LEU GLY GLU GLU SEQRES 3 E 73 LEU LEU ALA GLN GLY ASP TYR GLU LYS GLY VAL ASP HIS SEQRES 4 E 73 LEU THR ASN ALA ILE ALA VAL SER GLY GLN PRO GLN GLN SEQRES 5 E 73 LEU LEU GLN VAL LEU GLN GLN THR LEU PRO PRO PRO VAL SEQRES 6 E 73 PHE GLN MET LEU LEU THR LYS LEU SEQRES 1 F 12 GLY DCY ARG LEU CYS ARG LEU LEU SER TYR ALA NH2 SEQRES 1 G 73 GLY PRO LEU GLY SER ASP LEU LYS ASP ALA GLU ALA VAL SEQRES 2 G 73 GLN LYS PHE PHE LEU GLU GLU ILE GLN LEU GLY GLU GLU SEQRES 3 G 73 LEU LEU ALA GLN GLY ASP TYR GLU LYS GLY VAL ASP HIS SEQRES 4 G 73 LEU THR ASN ALA ILE ALA VAL SER GLY GLN PRO GLN GLN SEQRES 5 G 73 LEU LEU GLN VAL LEU GLN GLN THR LEU PRO PRO PRO VAL SEQRES 6 G 73 PHE GLN MET LEU LEU THR LYS LEU SEQRES 1 H 12 GLY DCY ARG LEU CYS ARG LEU LEU SER TYR ALA NH2 HET DCY B 13 6 HET NH2 B 23 1 HET DCY D 13 6 HET NH2 D 23 1 HET DCY F 13 6 HET NH2 F 23 1 HET DCY H 13 6 HET NH2 H 23 1 HETNAM DCY D-CYSTEINE HETNAM NH2 AMINO GROUP FORMUL 2 DCY 4(C3 H7 N O2 S) FORMUL 2 NH2 4(H2 N) FORMUL 9 HOH *36(H2 O) HELIX 1 1 LYS A 61 GLY A 84 1 24 HELIX 2 2 ASP A 85 VAL A 99 1 15 HELIX 3 3 GLN A 102 LEU A 114 1 13 HELIX 4 4 PRO A 115 LEU A 126 1 12 HELIX 5 5 DCY B 13 ALA B 22 1 10 HELIX 6 6 LYS C 61 GLN C 83 1 23 HELIX 7 7 ASP C 85 VAL C 99 1 15 HELIX 8 8 GLN C 102 LEU C 114 1 13 HELIX 9 9 PRO C 115 LYS C 125 1 11 HELIX 10 10 DCY D 13 TYR D 21 1 9 HELIX 11 11 ASP E 59 GLN E 83 1 25 HELIX 12 12 ASP E 85 SER E 100 1 16 HELIX 13 13 GLN E 102 LEU E 114 1 13 HELIX 14 14 PRO E 115 LYS E 125 1 11 HELIX 15 15 DCY F 13 ALA F 22 1 10 HELIX 16 16 ASP G 59 GLN G 83 1 25 HELIX 17 17 ASP G 85 VAL G 99 1 15 HELIX 18 18 GLN G 102 GLN G 111 1 10 HELIX 19 19 PRO G 115 LYS G 125 1 11 HELIX 20 20 DCY H 13 TYR H 21 1 9 SSBOND 1 DCY B 13 CYS B 16 1555 1555 2.06 SSBOND 2 DCY D 13 CYS D 16 1555 1555 2.16 SSBOND 3 DCY F 13 CYS F 16 1555 1555 2.09 SSBOND 4 DCY H 13 CYS H 16 1555 1555 2.09 LINK C GLY B 12 N DCY B 13 1555 1555 1.33 LINK C DCY B 13 N ARG B 14 1555 1555 1.33 LINK C ALA B 22 N NH2 B 23 1555 1555 1.27 LINK C GLY D 12 N DCY D 13 1555 1555 1.34 LINK C DCY D 13 N ARG D 14 1555 1555 1.33 LINK C ALA D 22 N NH2 D 23 1555 1555 1.27 LINK C GLY F 12 N DCY F 13 1555 1555 1.34 LINK C DCY F 13 N ARG F 14 1555 1555 1.33 LINK C ALA F 22 N NH2 F 23 1555 1555 1.25 LINK C GLY H 12 N DCY H 13 1555 1555 1.33 LINK C DCY H 13 N ARG H 14 1555 1555 1.33 LINK C ALA H 22 N NH2 H 23 1555 1555 1.27 CRYST1 99.596 99.596 195.180 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010041 0.005797 0.000000 0.00000 SCALE2 0.000000 0.011594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005123 0.00000