PDB Short entry for 3AYU HEADER HYDROLASE/HYDROLASE INHIBITOR 17-MAY-11 3AYU TITLE CRYSTAL STRUCTURE OF MMP-2 ACTIVE SITE MUTANT IN COMPLEX WITH APP- TITLE 2 DRIVED DECAPEPTIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 72 KDA TYPE IV COLLAGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 110-219 AND 394-450; COMPND 5 SYNONYM: 72 KDA GELATINASE, GELATINASE A, MATRIX METALLOPROTEINASE-2, COMPND 6 MMP-2; COMPND 7 EC: 3.4.24.24; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: FUSION PROTEIN OF UNP RESIDUES 110-219 AND 394-450 COMPND 11 FROM 72 KDA TYPE IV COLLAGENASE; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 14 CHAIN: B; COMPND 15 FRAGMENT: UNP RESIDUES 586-595; COMPND 16 SYNONYM: ABPP, APPI, APP, ALZHEIMER DISEASE AMYLOID PROTEIN, CEREBRAL COMPND 17 VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, PROTEASE NEXIN-II, PN-II; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP2, CLG4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PFLAG-CTC; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,T.TAKEUCHI,K.KOMATSU,K.MIYAZAKI,M.SATO,S.HIGASHI REVDAT 5 13-MAR-24 3AYU 1 REMARK SEQADV LINK REVDAT 4 09-AUG-17 3AYU 1 SOURCE REVDAT 3 17-AUG-11 3AYU 1 JRNL REVDAT 2 10-AUG-11 3AYU 1 AUTHOR REVDAT 1 03-AUG-11 3AYU 0 JRNL AUTH H.HASHIMOTO,T.TAKEUCHI,K.KOMATSU,K.MIYAZAKI,M.SATO,S.HIGASHI JRNL TITL STRUCTURAL BASIS FOR MATRIX METALLOPROTEINASE-2 JRNL TITL 2 (MMP-2)-SELECTIVE INHIBITORY ACTION OF {BETA}-AMYLOID JRNL TITL 3 PRECURSOR PROTEIN-DERIVED INHIBITOR JRNL REF J.BIOL.CHEM. 2011 JRNL REFN ESSN 1083-351X JRNL PMID 21813640 JRNL DOI 10.1074/JBC.M111.264176 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0085 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 578 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.269 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1438 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 963 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1954 ; 1.091 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2324 ; 0.813 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 174 ; 6.121 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;33.943 ;23.784 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 207 ;14.400 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;11.069 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1650 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 321 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3733 -11.8568 -4.6990 REMARK 3 T TENSOR REMARK 3 T11: 0.0184 T22: 0.0270 REMARK 3 T33: 0.0106 T12: -0.0068 REMARK 3 T13: 0.0110 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.8147 L22: 1.3019 REMARK 3 L33: 0.6166 L12: -0.3359 REMARK 3 L13: 0.0468 L23: 0.0702 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.0001 S13: 0.0280 REMARK 3 S21: -0.0320 S22: 0.0356 S23: -0.0463 REMARK 3 S31: -0.0211 S32: 0.0282 S33: -0.0386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3AYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000029865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.94050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.54100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 18.54100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.94050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 67 -134.47 47.37 REMARK 500 ASP A 79 -170.07 77.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 419 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD2 REMARK 620 2 ASP A 100 O 168.2 REMARK 620 3 ASP A 100 OD1 91.9 78.7 REMARK 620 4 GLU A 102 O 87.8 89.3 113.4 REMARK 620 5 HOH A 215 O 88.2 103.6 146.3 100.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 418 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 59 O REMARK 620 2 GLY A 91 O 166.6 REMARK 620 3 GLY A 93 O 94.6 96.6 REMARK 620 4 ASP A 95 OD1 85.1 101.7 91.5 REMARK 620 5 HOH A 212 O 87.5 80.3 171.4 97.0 REMARK 620 6 HOH A 303 O 85.1 89.3 82.3 167.9 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 416 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 ASP A 71 OD2 112.0 REMARK 620 3 HIS A 84 NE2 111.8 116.8 REMARK 620 4 HIS A 97 ND1 109.9 91.5 113.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 76 OD2 REMARK 620 2 GLY A 77 O 88.6 REMARK 620 3 ASP A 79 O 85.9 90.6 REMARK 620 4 LEU A 81 O 92.9 177.0 92.0 REMARK 620 5 ASP A 99 OD2 92.8 85.5 175.9 91.8 REMARK 620 6 GLU A 102 OE2 167.9 90.4 82.0 88.7 99.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 415 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 124 NE2 101.8 REMARK 620 3 HIS A 130 NE2 109.3 102.2 REMARK 620 4 ASP B 6 OD1 143.4 105.4 88.3 REMARK 620 5 ASP B 6 OD2 93.1 98.2 145.4 59.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF AMYLOID BETA A4 REMARK 800 PROTEIN DBREF 3AYU A 1 110 UNP P08253 MMP2_HUMAN 110 219 DBREF 3AYU A 111 167 UNP P08253 MMP2_HUMAN 394 450 DBREF 3AYU B 1 10 UNP P05067 A4_HUMAN 586 595 SEQADV 3AYU LYS A 108 UNP P08253 GLU 217 ENGINEERED MUTATION SEQADV 3AYU VAL A 110 UNP P08253 GLN 219 ENGINEERED MUTATION SEQADV 3AYU ALA A 121 UNP P08253 GLU 404 ENGINEERED MUTATION SEQRES 1 A 167 TYR ASN PHE PHE PRO ARG LYS PRO LYS TRP ASP LYS ASN SEQRES 2 A 167 GLN ILE THR TYR ARG ILE ILE GLY TYR THR PRO ASP LEU SEQRES 3 A 167 ASP PRO GLU THR VAL ASP ASP ALA PHE ALA ARG ALA PHE SEQRES 4 A 167 GLN VAL TRP SER ASP VAL THR PRO LEU ARG PHE SER ARG SEQRES 5 A 167 ILE HIS ASP GLY GLU ALA ASP ILE MET ILE ASN PHE GLY SEQRES 6 A 167 ARG TRP GLU HIS GLY ASP GLY TYR PRO PHE ASP GLY LYS SEQRES 7 A 167 ASP GLY LEU LEU ALA HIS ALA PHE ALA PRO GLY THR GLY SEQRES 8 A 167 VAL GLY GLY ASP SER HIS PHE ASP ASP ASP GLU LEU TRP SEQRES 9 A 167 THR LEU GLY LYS GLY VAL GLY TYR SER LEU PHE LEU VAL SEQRES 10 A 167 ALA ALA HIS ALA PHE GLY HIS ALA MET GLY LEU GLU HIS SEQRES 11 A 167 SER GLN ASP PRO GLY ALA LEU MET ALA PRO ILE TYR THR SEQRES 12 A 167 TYR THR LYS ASN PHE ARG LEU SER GLN ASP ASP ILE LYS SEQRES 13 A 167 GLY ILE GLN GLU LEU TYR GLY ALA SER PRO ASP SEQRES 1 B 10 ILE SER TYR GLY ASN ASP ALA LEU MET PRO HET ZN A 415 1 HET ZN A 416 1 HET CA A 417 1 HET CA A 418 1 HET CA A 419 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *263(H2 O) HELIX 1 1 ASP A 27 ASP A 44 1 18 HELIX 2 2 LEU A 114 MET A 126 1 13 HELIX 3 3 SER A 151 GLY A 163 1 13 SHEET 1 A 2 ASN A 2 PHE A 3 0 SHEET 2 A 2 LEU A 128 GLU A 129 -1 O GLU A 129 N ASN A 2 SHEET 1 B 6 ARG A 49 ARG A 52 0 SHEET 2 B 6 GLN A 14 ILE A 19 1 N ILE A 15 O ARG A 49 SHEET 3 B 6 ILE A 60 GLY A 65 1 O ILE A 62 N ARG A 18 SHEET 4 B 6 SER A 96 ASP A 99 1 O PHE A 98 N GLY A 65 SHEET 5 B 6 ALA A 83 PHE A 86 -1 N HIS A 84 O HIS A 97 SHEET 6 B 6 ALA B 7 LEU B 8 1 O LEU B 8 N ALA A 85 SHEET 1 C 2 TRP A 104 THR A 105 0 SHEET 2 C 2 TYR A 112 SER A 113 1 O TYR A 112 N THR A 105 LINK OD2 ASP A 25 CA CA A 419 1555 1555 2.36 LINK O ASP A 59 CA CA A 418 1555 1555 2.33 LINK NE2 HIS A 69 ZN ZN A 416 1555 1555 2.01 LINK OD2 ASP A 71 ZN ZN A 416 1555 1555 2.02 LINK OD2 ASP A 76 CA CA A 417 1555 1555 2.39 LINK O GLY A 77 CA CA A 417 1555 1555 2.27 LINK O ASP A 79 CA CA A 417 1555 1555 2.28 LINK O LEU A 81 CA CA A 417 1555 1555 2.24 LINK NE2 HIS A 84 ZN ZN A 416 1555 1555 2.04 LINK O GLY A 91 CA CA A 418 1555 1555 2.35 LINK O GLY A 93 CA CA A 418 1555 1555 2.28 LINK OD1 ASP A 95 CA CA A 418 1555 1555 2.43 LINK ND1 HIS A 97 ZN ZN A 416 1555 1555 2.13 LINK OD2 ASP A 99 CA CA A 417 1555 1555 2.29 LINK O ASP A 100 CA CA A 419 1555 1555 2.35 LINK OD1 ASP A 100 CA CA A 419 1555 1555 2.43 LINK OE2 GLU A 102 CA CA A 417 1555 1555 2.35 LINK O GLU A 102 CA CA A 419 1555 1555 2.30 LINK NE2 HIS A 120 ZN ZN A 415 1555 1555 2.05 LINK NE2 HIS A 124 ZN ZN A 415 1555 1555 2.11 LINK NE2 HIS A 130 ZN ZN A 415 1555 1555 2.08 LINK O HOH A 212 CA CA A 418 1555 1555 2.40 LINK O HOH A 215 CA CA A 419 1555 1555 2.48 LINK O HOH A 303 CA CA A 418 1555 1555 2.37 LINK ZN ZN A 415 OD1 ASP B 6 1555 1555 2.17 LINK ZN ZN A 415 OD2 ASP B 6 1555 1555 2.30 SITE 1 AC1 4 HIS A 120 HIS A 124 HIS A 130 ASP B 6 SITE 1 AC2 4 HIS A 69 ASP A 71 HIS A 84 HIS A 97 SITE 1 AC3 6 ASP A 76 GLY A 77 ASP A 79 LEU A 81 SITE 2 AC3 6 ASP A 99 GLU A 102 SITE 1 AC4 6 ASP A 59 GLY A 91 GLY A 93 ASP A 95 SITE 2 AC4 6 HOH A 212 HOH A 303 SITE 1 AC5 4 ASP A 25 ASP A 100 GLU A 102 HOH A 215 SITE 1 AC6 40 PHE A 4 ASP A 32 ARG A 52 HIS A 54 SITE 2 AC6 40 TYR A 73 ALA A 83 HIS A 84 ALA A 85 SITE 3 AC6 40 PHE A 86 ALA A 87 VAL A 92 GLY A 93 SITE 4 AC6 40 TYR A 112 HIS A 120 HIS A 124 HIS A 130 SITE 5 AC6 40 PRO A 140 ILE A 141 TYR A 142 ASN A 147 SITE 6 AC6 40 HOH A 208 HOH A 274 HOH A 280 HOH A 336 SITE 7 AC6 40 HOH A 345 HOH A 371 ZN A 415 HOH B 42 SITE 8 AC6 40 HOH B 46 HOH B 52 HOH B 79 HOH B 82 SITE 9 AC6 40 HOH B 104 HOH B 170 HOH B 178 HOH B 202 SITE 10 AC6 40 HOH B 226 HOH B 227 HOH B 264 HOH B 267 CRYST1 61.881 76.060 37.082 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016160 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026967 0.00000