PDB Short entry for 3B6Y HEADER PROTEIN BINDING 29-OCT-07 3B6Y TITLE CRYSTAL STRUCTURE OF THE SECOND HIN-200 DOMAIN OF INTERFERON-INDUCIBLE TITLE 2 PROTEIN 16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-INTERFERON-INDUCIBLE PROTEIN IFI-16; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SECOND (C-TERMINAL) HIN-200 DOMAIN; COMPND 5 SYNONYM: INTERFERON-INDUCIBLE MYELOID DIFFERENTIATION TRANSCRIPTIONAL COMPND 6 ACTIVATOR, IFI 16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IFI16, IFNGIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CONDON-PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSCRIPTION FACTOR, OB-FOLD, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, DNA-BINDING, INTERFERON INDUCTION, NUCLEUS, PHOSPHORYLATION, KEYWDS 4 REPRESSOR, TRANSCRIPTION REGULATION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.C.C.LIAO,R.LAM,M.RAVICHANDRAN,S.DUAN,W.TEMPEL,N.Y.CHIRGADZE, AUTHOR 2 C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 30-AUG-23 3B6Y 1 REMARK SEQADV REVDAT 4 25-OCT-17 3B6Y 1 REMARK REVDAT 3 13-JUL-11 3B6Y 1 VERSN REVDAT 2 24-FEB-09 3B6Y 1 VERSN REVDAT 1 13-NOV-07 3B6Y 0 JRNL AUTH J.C.C.LIAO,R.LAM,M.RAVICHANDRAN,S.DUAN,W.TEMPEL, JRNL AUTH 2 N.Y.CHIRGADZE,C.H.ARROWSMITH JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF THE SECOND HIN DOMAIN OF JRNL TITL 2 IFI16. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 877 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.67000 REMARK 3 B22 (A**2) : -1.14000 REMARK 3 B33 (A**2) : 2.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.432 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.236 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.308 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2996 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4035 ; 1.466 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 365 ; 6.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;36.092 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;18.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.988 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 465 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2180 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1003 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1948 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 69 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.343 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1907 ; 0.778 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2990 ; 1.256 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1224 ; 1.869 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1045 ; 2.899 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6980 49.4630 35.8640 REMARK 3 T TENSOR REMARK 3 T11: -0.0484 T22: -0.0785 REMARK 3 T33: -0.1064 T12: 0.0243 REMARK 3 T13: 0.0133 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 10.9741 L22: 0.8577 REMARK 3 L33: 1.9203 L12: -0.4762 REMARK 3 L13: -0.5261 L23: -0.4556 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.2817 S13: 0.8407 REMARK 3 S21: 0.1726 S22: 0.0068 S23: -0.0310 REMARK 3 S31: -0.0323 S32: -0.0681 S33: -0.0294 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8790 34.0340 34.8680 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: -0.0771 REMARK 3 T33: -0.0934 T12: -0.0386 REMARK 3 T13: 0.0367 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 9.3876 L22: 8.4143 REMARK 3 L33: 0.4805 L12: -8.6300 REMARK 3 L13: -2.0155 L23: 2.0044 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: -0.2673 S13: -0.2252 REMARK 3 S21: 0.1402 S22: 0.0249 S23: -0.0497 REMARK 3 S31: 0.1787 S32: -0.2599 S33: -0.0658 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 191 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5980 28.9820 36.3690 REMARK 3 T TENSOR REMARK 3 T11: -0.0588 T22: -0.1199 REMARK 3 T33: 0.0045 T12: 0.0276 REMARK 3 T13: 0.1032 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 3.1588 L22: 6.2525 REMARK 3 L33: 0.7985 L12: 2.6321 REMARK 3 L13: 0.6342 L23: 0.6400 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.1961 S13: -0.5485 REMARK 3 S21: 0.0066 S22: -0.0491 S23: -0.4857 REMARK 3 S31: 0.0317 S32: 0.0184 S33: 0.0467 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 84 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1890 95.3010 37.2640 REMARK 3 T TENSOR REMARK 3 T11: -0.0733 T22: 0.0028 REMARK 3 T33: -0.1938 T12: 0.0040 REMARK 3 T13: 0.0319 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 7.8834 L22: 2.2195 REMARK 3 L33: 2.3067 L12: -0.2289 REMARK 3 L13: -1.1760 L23: -0.5887 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.2500 S13: 0.3105 REMARK 3 S21: 0.0946 S22: -0.0130 S23: -0.0273 REMARK 3 S31: 0.0257 S32: 0.0434 S33: 0.0568 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 85 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3390 80.4120 35.8490 REMARK 3 T TENSOR REMARK 3 T11: -0.1046 T22: -0.0772 REMARK 3 T33: 0.0118 T12: -0.0536 REMARK 3 T13: 0.1135 T23: 0.1426 REMARK 3 L TENSOR REMARK 3 L11: 13.5477 L22: 8.7193 REMARK 3 L33: 1.2835 L12: -8.5443 REMARK 3 L13: -3.9788 L23: 1.8906 REMARK 3 S TENSOR REMARK 3 S11: -0.3925 S12: -0.5812 S13: -0.9977 REMARK 3 S21: 0.1902 S22: 0.2832 S23: 0.3238 REMARK 3 S31: 0.1827 S32: -0.2152 S33: 0.1093 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 191 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3960 74.7020 36.6330 REMARK 3 T TENSOR REMARK 3 T11: -0.0319 T22: -0.1226 REMARK 3 T33: 0.0556 T12: 0.0353 REMARK 3 T13: 0.1805 T23: 0.1112 REMARK 3 L TENSOR REMARK 3 L11: 5.5337 L22: 3.6928 REMARK 3 L33: 1.2955 L12: -0.1432 REMARK 3 L13: 1.2579 L23: 0.5296 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: -0.2167 S13: -0.8465 REMARK 3 S21: 0.1167 S22: 0.0956 S23: -0.0573 REMARK 3 S31: 0.1426 S32: 0.0224 S33: -0.0993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97800 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17421 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OQ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.49950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.18600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.44350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.18600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.49950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.44350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ASP A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 ASN A 176 REMARK 465 LYS A 192 REMARK 465 THR A 193 REMARK 465 ARG A 194 REMARK 465 LYS A 195 REMARK 465 ASN A 196 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ASP B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 GLN B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 ASN B 176 REMARK 465 LYS B 192 REMARK 465 THR B 193 REMARK 465 ARG B 194 REMARK 465 LYS B 195 REMARK 465 ASN B 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 54 55.69 -103.22 REMARK 500 LYS A 57 -8.65 80.62 REMARK 500 ASP A 86 4.02 -67.67 REMARK 500 ALA A 99 -84.72 -63.53 REMARK 500 PHE B 54 49.47 -91.21 REMARK 500 LYS B 57 -12.63 87.06 REMARK 500 ALA B 99 -76.59 -53.88 REMARK 500 SER B 100 38.39 -89.99 REMARK 500 ASP B 139 -166.32 -125.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 197 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR4626A RELATED DB: TARGETDB REMARK 900 RELATED ID: 2OQ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FIRST HIN-200 DOMAIN OF INTERFERON- REMARK 900 INDUCIBLE PROTEIN 16 DBREF 3B6Y A 1 196 UNP Q16666 IF16_HUMAN 571 766 DBREF 3B6Y B 1 196 UNP Q16666 IF16_HUMAN 571 766 SEQADV 3B6Y GLY A -3 UNP Q16666 EXPRESSION TAG SEQADV 3B6Y SER A -2 UNP Q16666 EXPRESSION TAG SEQADV 3B6Y HIS A -1 UNP Q16666 EXPRESSION TAG SEQADV 3B6Y MET A 0 UNP Q16666 EXPRESSION TAG SEQADV 3B6Y GLY B -3 UNP Q16666 EXPRESSION TAG SEQADV 3B6Y SER B -2 UNP Q16666 EXPRESSION TAG SEQADV 3B6Y HIS B -1 UNP Q16666 EXPRESSION TAG SEQADV 3B6Y MET B 0 UNP Q16666 EXPRESSION TAG SEQRES 1 A 200 GLY SER HIS MET ASP SER ALA GLN SER ASP LEU LYS GLU SEQRES 2 A 200 VAL MET VAL LEU ASN ALA THR GLU SER PHE VAL TYR GLU SEQRES 3 A 200 PRO LYS GLU GLN LYS LYS MET PHE HIS ALA THR VAL ALA SEQRES 4 A 200 THR GLU ASN GLU VAL PHE ARG VAL LYS VAL PHE ASN ILE SEQRES 5 A 200 ASP LEU LYS GLU LYS PHE THR PRO LYS LYS ILE ILE ALA SEQRES 6 A 200 ILE ALA ASN TYR VAL CYS ARG ASN GLY PHE LEU GLU VAL SEQRES 7 A 200 TYR PRO PHE THR LEU VAL ALA ASP VAL ASN ALA ASP ARG SEQRES 8 A 200 ASN MET GLU ILE PRO LYS GLY LEU ILE ARG SER ALA SER SEQRES 9 A 200 VAL THR PRO LYS ILE ASN GLN LEU CYS SER GLN THR LYS SEQRES 10 A 200 GLY SER PHE VAL ASN GLY VAL PHE GLU VAL HIS LYS LYS SEQRES 11 A 200 ASN VAL ARG GLY GLU PHE THR TYR TYR GLU ILE GLN ASP SEQRES 12 A 200 ASN THR GLY LYS MET GLU VAL VAL VAL HIS GLY ARG LEU SEQRES 13 A 200 THR THR ILE ASN CYS GLU GLU GLY ASP LYS LEU LYS LEU SEQRES 14 A 200 THR CYS PHE GLU LEU ALA PRO LYS SER GLY ASN THR GLY SEQRES 15 A 200 GLU LEU ARG SER VAL ILE HIS SER HIS ILE LYS VAL ILE SEQRES 16 A 200 LYS THR ARG LYS ASN SEQRES 1 B 200 GLY SER HIS MET ASP SER ALA GLN SER ASP LEU LYS GLU SEQRES 2 B 200 VAL MET VAL LEU ASN ALA THR GLU SER PHE VAL TYR GLU SEQRES 3 B 200 PRO LYS GLU GLN LYS LYS MET PHE HIS ALA THR VAL ALA SEQRES 4 B 200 THR GLU ASN GLU VAL PHE ARG VAL LYS VAL PHE ASN ILE SEQRES 5 B 200 ASP LEU LYS GLU LYS PHE THR PRO LYS LYS ILE ILE ALA SEQRES 6 B 200 ILE ALA ASN TYR VAL CYS ARG ASN GLY PHE LEU GLU VAL SEQRES 7 B 200 TYR PRO PHE THR LEU VAL ALA ASP VAL ASN ALA ASP ARG SEQRES 8 B 200 ASN MET GLU ILE PRO LYS GLY LEU ILE ARG SER ALA SER SEQRES 9 B 200 VAL THR PRO LYS ILE ASN GLN LEU CYS SER GLN THR LYS SEQRES 10 B 200 GLY SER PHE VAL ASN GLY VAL PHE GLU VAL HIS LYS LYS SEQRES 11 B 200 ASN VAL ARG GLY GLU PHE THR TYR TYR GLU ILE GLN ASP SEQRES 12 B 200 ASN THR GLY LYS MET GLU VAL VAL VAL HIS GLY ARG LEU SEQRES 13 B 200 THR THR ILE ASN CYS GLU GLU GLY ASP LYS LEU LYS LEU SEQRES 14 B 200 THR CYS PHE GLU LEU ALA PRO LYS SER GLY ASN THR GLY SEQRES 15 B 200 GLU LEU ARG SER VAL ILE HIS SER HIS ILE LYS VAL ILE SEQRES 16 B 200 LYS THR ARG LYS ASN HET SO4 A 197 5 HET SO4 B 197 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *17(H2 O) HELIX 1 1 ASN A 47 THR A 55 5 9 HELIX 2 2 ASN A 84 ASN A 88 5 5 HELIX 3 3 PRO A 92 SER A 98 1 7 HELIX 4 4 LYS A 104 CYS A 109 1 6 HELIX 5 5 ARG A 151 ILE A 155 5 5 HELIX 6 6 ASN B 47 LYS B 51 5 5 HELIX 7 7 ASN B 84 ASN B 88 5 5 HELIX 8 8 PRO B 92 SER B 100 1 9 HELIX 9 9 LYS B 104 GLN B 111 1 8 HELIX 10 10 ARG B 151 ILE B 155 5 5 SHEET 1 A 5 PHE A 19 GLU A 22 0 SHEET 2 A 5 LYS A 27 ALA A 35 -1 O MET A 29 N PHE A 19 SHEET 3 A 5 VAL A 40 VAL A 45 -1 O VAL A 43 N ALA A 32 SHEET 4 A 5 PHE A 71 VAL A 74 1 O VAL A 74 N LYS A 44 SHEET 5 A 5 VAL A 66 ARG A 68 -1 N VAL A 66 O GLU A 73 SHEET 1 B 5 PHE A 19 GLU A 22 0 SHEET 2 B 5 LYS A 27 ALA A 35 -1 O MET A 29 N PHE A 19 SHEET 3 B 5 LYS A 8 ALA A 15 -1 N MET A 11 O ALA A 35 SHEET 4 B 5 ILE A 59 ALA A 63 -1 O ILE A 60 N VAL A 10 SHEET 5 B 5 LEU A 79 ASP A 82 -1 O ALA A 81 N ALA A 61 SHEET 1 C 7 HIS A 187 ILE A 191 0 SHEET 2 C 7 LYS A 162 PRO A 172 -1 N LYS A 164 O LYS A 189 SHEET 3 C 7 GLY A 178 ARG A 181 -1 O GLU A 179 N ALA A 171 SHEET 4 C 7 LYS A 143 HIS A 149 1 N VAL A 147 O LEU A 180 SHEET 5 C 7 PHE A 132 GLN A 138 -1 N TYR A 135 O VAL A 146 SHEET 6 C 7 SER A 115 ARG A 129 -1 N ASN A 127 O TYR A 134 SHEET 7 C 7 LYS A 162 PRO A 172 -1 O LEU A 165 N GLY A 119 SHEET 1 D 5 PHE B 19 GLU B 22 0 SHEET 2 D 5 LYS B 27 ALA B 35 -1 O LYS B 27 N GLU B 22 SHEET 3 D 5 VAL B 40 VAL B 45 -1 O PHE B 41 N VAL B 34 SHEET 4 D 5 PHE B 71 VAL B 74 1 O LEU B 72 N LYS B 44 SHEET 5 D 5 VAL B 66 ARG B 68 -1 N VAL B 66 O GLU B 73 SHEET 1 E 5 PHE B 19 GLU B 22 0 SHEET 2 E 5 LYS B 27 ALA B 35 -1 O LYS B 27 N GLU B 22 SHEET 3 E 5 LYS B 8 ALA B 15 -1 N MET B 11 O ALA B 35 SHEET 4 E 5 ILE B 59 ALA B 63 -1 O ILE B 60 N VAL B 10 SHEET 5 E 5 LEU B 79 ASP B 82 -1 O LEU B 79 N ALA B 63 SHEET 1 F 7 HIS B 187 ILE B 191 0 SHEET 2 F 7 LYS B 162 PRO B 172 -1 N LYS B 162 O ILE B 191 SHEET 3 F 7 GLY B 178 ARG B 181 -1 O GLU B 179 N ALA B 171 SHEET 4 F 7 GLY B 142 HIS B 149 1 N VAL B 147 O LEU B 180 SHEET 5 F 7 PHE B 132 ASP B 139 -1 N TYR B 135 O VAL B 146 SHEET 6 F 7 SER B 115 ARG B 129 -1 N HIS B 124 O GLU B 136 SHEET 7 F 7 LYS B 162 PRO B 172 -1 O LEU B 165 N GLY B 119 SSBOND 1 CYS A 67 CYS B 67 1555 3545 2.07 SITE 1 AC1 3 THR A 36 ASN A 38 ARG B 68 SITE 1 AC2 3 LYS B 24 THR B 36 ASN B 38 CRYST1 42.999 92.887 100.372 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023256 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009963 0.00000