PDB Short entry for 3B96 HEADER OXIDOREDUCTASE 02-NOV-07 3B96 TITLE STRUCTURAL BASIS FOR SUBSTRATE FATTY-ACYL CHAIN SPECIFICITY: CRYSTAL TITLE 2 STRUCTURE OF HUMAN VERY-LONG-CHAIN ACYL-COA DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VERY LONG-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VLCAD; COMPND 5 EC: 1.3.99.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACADVL, VLCAD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS ACYL-COA, FATTY ACID BETA-OXIDATION, DEHYDROGENASE, VERY LONG CHAIN, KEYWDS 2 MITOCHONDRIA, MEMBRANE, ACETYLATION, ALTERNATIVE SPLICING, KEYWDS 3 CARDIOMYOPATHY, DISEASE MUTATION, FAD, FATTY ACID METABOLISM, KEYWDS 4 FLAVOPROTEIN, LIPID METABOLISM, MITOCHONDRION, OXIDOREDUCTASE, KEYWDS 5 POLYMORPHISM, TRANSIT PEPTIDE, UBL CONJUGATION EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MCANDREW,Y.WANG,A.W.MOHSEN,M.HE,J.VOCKLEY,J.J.KIM REVDAT 6 21-FEB-24 3B96 1 REMARK REVDAT 5 25-OCT-17 3B96 1 REMARK REVDAT 4 09-JUN-09 3B96 1 REVDAT REVDAT 3 24-FEB-09 3B96 1 VERSN REVDAT 2 27-JAN-09 3B96 1 JRNL REVDAT 1 12-FEB-08 3B96 0 JRNL AUTH R.P.MCANDREW,Y.WANG,A.W.MOHSEN,M.HE,J.VOCKLEY,J.J.KIM JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE FATTY ACYL CHAIN SPECIFICITY: JRNL TITL 2 CRYSTAL STRUCTURE OF HUMAN VERY-LONG-CHAIN ACYL-COA JRNL TITL 3 DEHYDROGENASE. JRNL REF J.BIOL.CHEM. V. 283 9435 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18227065 JRNL DOI 10.1074/JBC.M709135200 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 46738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2371 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4381 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5912 ; 1.353 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 552 ; 6.034 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;37.300 ;24.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 760 ;14.295 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.360 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3238 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2152 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3065 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 362 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 103 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2822 ; 3.728 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4371 ; 4.221 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1806 ; 7.019 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1541 ; 9.717 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3B96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-06; 14-MAY-06; 14-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 93; 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; APS; APS REMARK 200 BEAMLINE : NULL; 19-ID; 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419; 1.0083; 1.1405 REMARK 200 MONOCHROMATOR : NI FILTER; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++; NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SOLVE 2.05, DM 4.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 17.6% PEG 2000, 0.047 M REMARK 280 MGCL2, 5% GLYCEROL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.88800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.88800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.30800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.93950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.30800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.93950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.88800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.30800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.93950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.88800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.30800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.93950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15340 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.61600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.88800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 446 REMARK 465 LEU A 447 REMARK 465 GLY A 448 REMARK 465 SER A 449 REMARK 465 ALA A 450 REMARK 465 LEU A 451 REMARK 465 LYS A 452 REMARK 465 ASN A 453 REMARK 465 PRO A 454 REMARK 465 PHE A 455 REMARK 465 GLY A 456 REMARK 465 ASN A 457 REMARK 465 ALA A 458 REMARK 465 GLY A 459 REMARK 465 LEU A 460 REMARK 465 LEU A 461 REMARK 465 LEU A 462 REMARK 465 GLY A 463 REMARK 465 GLU A 464 REMARK 465 ALA A 465 REMARK 465 GLY A 466 REMARK 465 LYS A 467 REMARK 465 GLN A 468 REMARK 465 LEU A 469 REMARK 465 ARG A 470 REMARK 465 ARG A 471 REMARK 465 ARG A 472 REMARK 465 ALA A 473 REMARK 465 GLY A 474 REMARK 465 LEU A 475 REMARK 465 GLY A 476 REMARK 465 SER A 477 REMARK 465 GLY A 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 400 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 419 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 419 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 47 -50.10 -121.65 REMARK 500 ASP A 131 95.23 -163.50 REMARK 500 ILE A 144 -33.41 -130.51 REMARK 500 ILE A 262 48.69 31.83 REMARK 500 LYS A 515 -132.21 51.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MYA A 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 616 DBREF 3B96 A 29 615 UNP P49748 ACADV_HUMAN 69 655 SEQRES 1 A 587 GLU SER LYS SER PHE ALA VAL GLY MET PHE LYS GLY GLN SEQRES 2 A 587 LEU THR THR ASP GLN VAL PHE PRO TYR PRO SER VAL LEU SEQRES 3 A 587 ASN GLU GLU GLN THR GLN PHE LEU LYS GLU LEU VAL GLU SEQRES 4 A 587 PRO VAL SER ARG PHE PHE GLU GLU VAL ASN ASP PRO ALA SEQRES 5 A 587 LYS ASN ASP ALA LEU GLU MET VAL GLU GLU THR THR TRP SEQRES 6 A 587 GLN GLY LEU LYS GLU LEU GLY ALA PHE GLY LEU GLN VAL SEQRES 7 A 587 PRO SER GLU LEU GLY GLY VAL GLY LEU CYS ASN THR GLN SEQRES 8 A 587 TYR ALA ARG LEU VAL GLU ILE VAL GLY MET HIS ASP LEU SEQRES 9 A 587 GLY VAL GLY ILE THR LEU GLY ALA HIS GLN SER ILE GLY SEQRES 10 A 587 PHE LYS GLY ILE LEU LEU PHE GLY THR LYS ALA GLN LYS SEQRES 11 A 587 GLU LYS TYR LEU PRO LYS LEU ALA SER GLY GLU THR VAL SEQRES 12 A 587 ALA ALA PHE CYS LEU THR GLU PRO SER SER GLY SER ASP SEQRES 13 A 587 ALA ALA SER ILE ARG THR SER ALA VAL PRO SER PRO CYS SEQRES 14 A 587 GLY LYS TYR TYR THR LEU ASN GLY SER LYS LEU TRP ILE SEQRES 15 A 587 SER ASN GLY GLY LEU ALA ASP ILE PHE THR VAL PHE ALA SEQRES 16 A 587 LYS THR PRO VAL THR ASP PRO ALA THR GLY ALA VAL LYS SEQRES 17 A 587 GLU LYS ILE THR ALA PHE VAL VAL GLU ARG GLY PHE GLY SEQRES 18 A 587 GLY ILE THR HIS GLY PRO PRO GLU LYS LYS MET GLY ILE SEQRES 19 A 587 LYS ALA SER ASN THR ALA GLU VAL PHE PHE ASP GLY VAL SEQRES 20 A 587 ARG VAL PRO SER GLU ASN VAL LEU GLY GLU VAL GLY SER SEQRES 21 A 587 GLY PHE LYS VAL ALA MET HIS ILE LEU ASN ASN GLY ARG SEQRES 22 A 587 PHE GLY MET ALA ALA ALA LEU ALA GLY THR MET ARG GLY SEQRES 23 A 587 ILE ILE ALA LYS ALA VAL ASP HIS ALA THR ASN ARG THR SEQRES 24 A 587 GLN PHE GLY GLU LYS ILE HIS ASN PHE GLY LEU ILE GLN SEQRES 25 A 587 GLU LYS LEU ALA ARG MET VAL MET LEU GLN TYR VAL THR SEQRES 26 A 587 GLU SER MET ALA TYR MET VAL SER ALA ASN MET ASP GLN SEQRES 27 A 587 GLY ALA THR ASP PHE GLN ILE GLU ALA ALA ILE SER LYS SEQRES 28 A 587 ILE PHE GLY SER GLU ALA ALA TRP LYS VAL THR ASP GLU SEQRES 29 A 587 CYS ILE GLN ILE MET GLY GLY MET GLY PHE MET LYS GLU SEQRES 30 A 587 PRO GLY VAL GLU ARG VAL LEU ARG ASP LEU ARG ILE PHE SEQRES 31 A 587 ARG ILE PHE GLU GLY THR ASN ASP ILE LEU ARG LEU PHE SEQRES 32 A 587 VAL ALA LEU GLN GLY CYS MET ASP LYS GLY LYS GLU LEU SEQRES 33 A 587 SER GLY LEU GLY SER ALA LEU LYS ASN PRO PHE GLY ASN SEQRES 34 A 587 ALA GLY LEU LEU LEU GLY GLU ALA GLY LYS GLN LEU ARG SEQRES 35 A 587 ARG ARG ALA GLY LEU GLY SER GLY LEU SER LEU SER GLY SEQRES 36 A 587 LEU VAL HIS PRO GLU LEU SER ARG SER GLY GLU LEU ALA SEQRES 37 A 587 VAL ARG ALA LEU GLU GLN PHE ALA THR VAL VAL GLU ALA SEQRES 38 A 587 LYS LEU ILE LYS HIS LYS LYS GLY ILE VAL ASN GLU GLN SEQRES 39 A 587 PHE LEU LEU GLN ARG LEU ALA ASP GLY ALA ILE ASP LEU SEQRES 40 A 587 TYR ALA MET VAL VAL VAL LEU SER ARG ALA SER ARG SER SEQRES 41 A 587 LEU SER GLU GLY HIS PRO THR ALA GLN HIS GLU LYS MET SEQRES 42 A 587 LEU CYS ASP THR TRP CYS ILE GLU ALA ALA ALA ARG ILE SEQRES 43 A 587 ARG GLU GLY MET ALA ALA LEU GLN SER ASP PRO TRP GLN SEQRES 44 A 587 GLN GLU LEU TYR ARG ASN PHE LYS SER ILE SER LYS ALA SEQRES 45 A 587 LEU VAL GLU ARG GLY GLY VAL VAL THR SER ASN PRO LEU SEQRES 46 A 587 GLY PHE HET MYA A 1 23 HET FAD A 616 53 HETNAM MYA TETRADECANOYL-COA HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN MYA MYRISTOYL-COA FORMUL 2 MYA C35 H62 N7 O17 P3 S FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 HOH *441(H2 O) HELIX 1 1 SER A 32 LYS A 39 1 8 HELIX 2 2 ASN A 55 VAL A 76 1 22 HELIX 3 3 ASP A 78 GLU A 86 1 9 HELIX 4 4 GLU A 89 GLY A 100 1 12 HELIX 5 5 PRO A 107 GLY A 111 5 5 HELIX 6 6 CYS A 116 ASP A 131 1 16 HELIX 7 7 ASP A 131 SER A 143 1 13 HELIX 8 8 PHE A 146 GLY A 153 1 8 HELIX 9 9 THR A 154 SER A 167 1 14 HELIX 10 10 ASP A 184 ILE A 188 5 5 HELIX 11 11 GLY A 247 GLY A 249 5 3 HELIX 12 12 SER A 288 ARG A 326 1 39 HELIX 13 13 PHE A 336 GLN A 366 1 31 HELIX 14 14 PHE A 371 GLY A 398 1 28 HELIX 15 15 GLY A 398 MET A 403 1 6 HELIX 16 16 GLY A 407 ARG A 416 1 10 HELIX 17 17 ILE A 417 ILE A 420 5 4 HELIX 18 18 THR A 424 SER A 445 1 22 HELIX 19 19 HIS A 486 GLU A 488 5 3 HELIX 20 20 LEU A 489 LYS A 515 1 27 HELIX 21 21 LYS A 516 ASN A 520 5 5 HELIX 22 22 GLU A 521 GLY A 552 1 32 HELIX 23 23 THR A 555 SER A 583 1 29 HELIX 24 24 TRP A 586 GLY A 605 1 20 SHEET 1 A 4 ALA A 172 CYS A 175 0 SHEET 2 A 4 ILE A 218 THR A 228 1 O THR A 220 N CYS A 175 SHEET 3 A 4 VAL A 235 GLU A 245 -1 O LYS A 236 N VAL A 227 SHEET 4 A 4 VAL A 282 LEU A 283 -1 O LEU A 283 N ALA A 241 SHEET 1 B 4 SER A 191 PRO A 194 0 SHEET 2 B 4 TYR A 200 SER A 211 -1 O ASN A 204 N SER A 191 SHEET 3 B 4 THR A 267 PRO A 278 -1 O PHE A 272 N GLY A 205 SHEET 4 B 4 ILE A 251 HIS A 253 -1 N THR A 252 O PHE A 271 SHEET 1 C 2 THR A 327 GLN A 328 0 SHEET 2 C 2 GLU A 331 LYS A 332 -1 O GLU A 331 N GLN A 328 CISPEP 1 PHE A 48 PRO A 49 0 -7.32 SITE 1 AC1 10 TYR A 120 VAL A 124 GLY A 135 ILE A 144 SITE 2 AC1 10 LEU A 297 PHE A 421 GLU A 422 GLY A 423 SITE 3 AC1 10 FAD A 616 HOH A1002 SITE 1 AC2 27 MYA A 1 PHE A 174 LEU A 176 THR A 177 SITE 2 AC2 27 GLY A 182 SER A 183 TRP A 209 ILE A 210 SITE 3 AC2 27 SER A 211 ARG A 326 GLN A 328 PHE A 329 SITE 4 AC2 27 ILE A 333 PHE A 336 GLN A 395 ILE A 396 SITE 5 AC2 27 GLY A 399 ILE A 417 PHE A 421 THR A 424 SITE 6 AC2 27 ASP A 426 ILE A 427 GLN A 522 HOH A 639 SITE 7 AC2 27 HOH A 654 HOH A 668 HOH A 680 CRYST1 74.616 107.879 149.776 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006677 0.00000