PDB Short entry for 3BDD HEADER TRANSCRIPTION 14-NOV-07 3BDD TITLE CRYSTAL STRUCTURE OF A PUTATIVE MULTIPLE ANTIBIOTIC-RESISTANCE TITLE 2 REPRESSOR (SSU05_1136) FROM STREPTOCOCCUS SUIS 89/1591 AT 2.20 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN MARR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SUIS; SOURCE 3 ORGANISM_TAXID: 286604; SOURCE 4 STRAIN: 89/1591; SOURCE 5 GENE: ZP_00875883.1, SSUIDRAFT_0346; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE MULTIPLE ANTIBIOTIC-RESISTANCE REPRESSOR, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, DNA-BINDING, TRANSCRIPTION REGULATION, KEYWDS 4 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 3BDD 1 REMARK SEQADV REVDAT 6 24-JUL-19 3BDD 1 REMARK LINK REVDAT 5 25-OCT-17 3BDD 1 REMARK REVDAT 4 13-JUL-11 3BDD 1 VERSN REVDAT 3 28-JUL-10 3BDD 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3BDD 1 VERSN REVDAT 1 04-DEC-07 3BDD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE MULTIPLE ANTIBIOTIC-RESISTANCE JRNL TITL 2 REPRESSOR (MARR) (ZP_00875883.1) FROM STREPTOCOCCUS SUIS JRNL TITL 3 89/1591 AT 2.20 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 31066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1581 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2146 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.329 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.317 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4462 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2979 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6056 ; 1.411 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7357 ; 1.275 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 551 ; 3.131 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;28.684 ;25.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 846 ;10.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;10.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4813 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 779 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 957 ; 0.150 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2741 ; 0.111 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2090 ; 0.133 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2099 ; 0.071 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.055 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.057 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3422 ; 0.977 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1086 ; 0.199 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4456 ; 1.288 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1823 ; 3.070 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1594 ; 4.372 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 76 5 REMARK 3 1 B 3 B 76 5 REMARK 3 1 C 3 C 76 5 REMARK 3 1 D 3 D 76 5 REMARK 3 2 A 87 A 140 5 REMARK 3 2 B 87 B 140 5 REMARK 3 2 C 87 C 140 5 REMARK 3 2 D 87 D 140 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 749 ; 0.310 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 749 ; 0.260 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 749 ; 0.320 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 749 ; 0.240 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 801 ; 0.620 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 801 ; 0.570 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 801 ; 0.610 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 D (A): 801 ; 0.590 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 749 ; 0.360 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 749 ; 0.250 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 749 ; 0.380 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 749 ; 0.350 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 801 ; 0.440 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 801 ; 0.330 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 801 ; 0.440 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 801 ; 0.420 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3090 19.8930 -24.8900 REMARK 3 T TENSOR REMARK 3 T11: -0.1794 T22: -0.0384 REMARK 3 T33: -0.0988 T12: 0.0065 REMARK 3 T13: 0.0180 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.1090 L22: 2.7553 REMARK 3 L33: 1.3406 L12: 0.5058 REMARK 3 L13: -0.1459 L23: -1.1174 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: 0.0048 S13: 0.2173 REMARK 3 S21: 0.1177 S22: 0.0615 S23: 0.1718 REMARK 3 S31: -0.0537 S32: -0.0395 S33: -0.1084 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 77 REMARK 3 RESIDUE RANGE : B 85 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9770 31.7870 -46.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.0129 T22: 0.1556 REMARK 3 T33: 0.0796 T12: -0.1450 REMARK 3 T13: -0.0558 T23: 0.1407 REMARK 3 L TENSOR REMARK 3 L11: 2.2899 L22: 2.9376 REMARK 3 L33: 3.5014 L12: 1.4337 REMARK 3 L13: 0.4146 L23: 0.9417 REMARK 3 S TENSOR REMARK 3 S11: -0.3997 S12: 0.6635 S13: 0.3223 REMARK 3 S21: -0.5822 S22: 0.4645 S23: 0.2391 REMARK 3 S31: -0.2537 S32: 0.1126 S33: -0.0648 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 141 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1220 10.0050 -55.5620 REMARK 3 T TENSOR REMARK 3 T11: -0.1186 T22: 0.0966 REMARK 3 T33: -0.0830 T12: 0.0136 REMARK 3 T13: -0.0563 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.5672 L22: 0.8424 REMARK 3 L33: 4.2184 L12: -0.0450 REMARK 3 L13: -1.0502 L23: 0.9032 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.0757 S13: 0.0282 REMARK 3 S21: -0.0982 S22: -0.0418 S23: 0.0659 REMARK 3 S31: -0.0649 S32: 0.4552 S33: 0.0607 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 77 REMARK 3 RESIDUE RANGE : D 86 D 141 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3760 4.9380 -31.9880 REMARK 3 T TENSOR REMARK 3 T11: -0.1484 T22: -0.0131 REMARK 3 T33: 0.0523 T12: -0.0189 REMARK 3 T13: 0.0246 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.6350 L22: 1.1637 REMARK 3 L33: 2.0948 L12: 0.2232 REMARK 3 L13: 1.9143 L23: -0.2061 REMARK 3 S TENSOR REMARK 3 S11: 0.1823 S12: -0.2707 S13: -0.4936 REMARK 3 S21: 0.0447 S22: -0.0302 S23: -0.0676 REMARK 3 S31: 0.3396 S32: -0.2064 S33: -0.1521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. RESIDUES 0-1 IN CHAIN A, 0-1, 78-84 IN CHAIN B, 0-1 IN CHAIN C, REMARK 3 AND 0-1, 78-85 IN CHAIN D ARE DISORDERED AND NOT INCLUDED IN THE REMARK 3 MODEL. REMARK 3 5. GOL AND PO4 MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION REMARK 3 ARE MODELED. REMARK 3 6. R-FACTORS ARE SLIGHTLY HIGH, ESPECIALLY NEAR 5.5 A RESOLUTION REMARK 3 SHELL. REMARK 4 REMARK 4 3BDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1000045380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 0.9798 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31068 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 15.895 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : 0.41700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NACL, 20.0% PEG 8000, REMARK 280 0.1M PHOSPHATE CITRATE PH 4.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.21500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5600 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5600 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 78 REMARK 465 ASN B 79 REMARK 465 PRO B 80 REMARK 465 ASP B 81 REMARK 465 ASN B 82 REMARK 465 GLN B 83 REMARK 465 ARG B 84 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 GLY D 0 REMARK 465 MSE D 1 REMARK 465 ARG D 78 REMARK 465 ASN D 79 REMARK 465 PRO D 80 REMARK 465 ASP D 81 REMARK 465 ASN D 82 REMARK 465 GLN D 83 REMARK 465 ARG D 84 REMARK 465 GLU D 85 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 NZ REMARK 470 ARG A 78 NH1 NH2 REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 GLU B 16 CD OE1 OE2 REMARK 470 ARG B 53 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 66 CD CE NZ REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 GLU C 16 CD OE1 OE2 REMARK 470 LYS C 24 CE NZ REMARK 470 GLU C 70 CG CD OE1 OE2 REMARK 470 LYS C 77 CD CE NZ REMARK 470 ARG C 78 CD NE CZ NH1 NH2 REMARK 470 ARG C 84 CD NE CZ NH1 NH2 REMARK 470 LYS C 110 CD CE NZ REMARK 470 GLU D 3 CG CD OE1 OE2 REMARK 470 GLU D 5 CD OE1 OE2 REMARK 470 LYS D 41 CD CE NZ REMARK 470 ARG D 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 66 CE NZ REMARK 470 LYS D 77 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 101 54.78 -143.51 REMARK 500 PRO A 140 150.29 -47.92 REMARK 500 GLN B 55 63.32 64.36 REMARK 500 ILE B 99 -71.65 -106.19 REMARK 500 ASN B 101 59.84 -153.20 REMARK 500 ASP C 42 57.80 -143.22 REMARK 500 GLN C 83 -38.85 81.38 REMARK 500 ILE C 99 -63.49 -124.32 REMARK 500 ASN C 101 53.80 -147.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 142 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 378153 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3BDD A 1 141 UNP Q2ZYK0 Q2ZYK0_STRSU 1 141 DBREF 3BDD B 1 141 UNP Q2ZYK0 Q2ZYK0_STRSU 1 141 DBREF 3BDD C 1 141 UNP Q2ZYK0 Q2ZYK0_STRSU 1 141 DBREF 3BDD D 1 141 UNP Q2ZYK0 Q2ZYK0_STRSU 1 141 SEQADV 3BDD GLY A 0 UNP Q2ZYK0 EXPRESSION TAG SEQADV 3BDD GLY B 0 UNP Q2ZYK0 EXPRESSION TAG SEQADV 3BDD GLY C 0 UNP Q2ZYK0 EXPRESSION TAG SEQADV 3BDD GLY D 0 UNP Q2ZYK0 EXPRESSION TAG SEQRES 1 A 142 GLY MSE GLN GLU MSE GLU ASP LEU LEU TYR ARG LEU LYS SEQRES 2 A 142 VAL ALA ASP GLU THR ILE SER ASN LEU PHE GLU LYS GLN SEQRES 3 A 142 LEU GLY ILE SER LEU THR ARG TYR SER ILE LEU GLN THR SEQRES 4 A 142 LEU LEU LYS ASP ALA PRO LEU HIS GLN LEU ALA LEU GLN SEQRES 5 A 142 GLU ARG LEU GLN ILE ASP ARG ALA ALA VAL THR ARG HIS SEQRES 6 A 142 LEU LYS LEU LEU GLU GLU SER GLY TYR ILE ILE ARG LYS SEQRES 7 A 142 ARG ASN PRO ASP ASN GLN ARG GLU VAL LEU VAL TRP PRO SEQRES 8 A 142 THR GLU GLN ALA ARG GLU ALA LEU ILE THR ASN PRO SER SEQRES 9 A 142 ALA HIS HIS GLN ALA ILE LYS THR SER MSE ASN GLN ILE SEQRES 10 A 142 LEU THR VAL GLU GLU SER GLU GLN PHE LEU ALA THR LEU SEQRES 11 A 142 ASP LYS LEU LEU ILE GLY LEU GLN ASN LEU PRO ILE SEQRES 1 B 142 GLY MSE GLN GLU MSE GLU ASP LEU LEU TYR ARG LEU LYS SEQRES 2 B 142 VAL ALA ASP GLU THR ILE SER ASN LEU PHE GLU LYS GLN SEQRES 3 B 142 LEU GLY ILE SER LEU THR ARG TYR SER ILE LEU GLN THR SEQRES 4 B 142 LEU LEU LYS ASP ALA PRO LEU HIS GLN LEU ALA LEU GLN SEQRES 5 B 142 GLU ARG LEU GLN ILE ASP ARG ALA ALA VAL THR ARG HIS SEQRES 6 B 142 LEU LYS LEU LEU GLU GLU SER GLY TYR ILE ILE ARG LYS SEQRES 7 B 142 ARG ASN PRO ASP ASN GLN ARG GLU VAL LEU VAL TRP PRO SEQRES 8 B 142 THR GLU GLN ALA ARG GLU ALA LEU ILE THR ASN PRO SER SEQRES 9 B 142 ALA HIS HIS GLN ALA ILE LYS THR SER MSE ASN GLN ILE SEQRES 10 B 142 LEU THR VAL GLU GLU SER GLU GLN PHE LEU ALA THR LEU SEQRES 11 B 142 ASP LYS LEU LEU ILE GLY LEU GLN ASN LEU PRO ILE SEQRES 1 C 142 GLY MSE GLN GLU MSE GLU ASP LEU LEU TYR ARG LEU LYS SEQRES 2 C 142 VAL ALA ASP GLU THR ILE SER ASN LEU PHE GLU LYS GLN SEQRES 3 C 142 LEU GLY ILE SER LEU THR ARG TYR SER ILE LEU GLN THR SEQRES 4 C 142 LEU LEU LYS ASP ALA PRO LEU HIS GLN LEU ALA LEU GLN SEQRES 5 C 142 GLU ARG LEU GLN ILE ASP ARG ALA ALA VAL THR ARG HIS SEQRES 6 C 142 LEU LYS LEU LEU GLU GLU SER GLY TYR ILE ILE ARG LYS SEQRES 7 C 142 ARG ASN PRO ASP ASN GLN ARG GLU VAL LEU VAL TRP PRO SEQRES 8 C 142 THR GLU GLN ALA ARG GLU ALA LEU ILE THR ASN PRO SER SEQRES 9 C 142 ALA HIS HIS GLN ALA ILE LYS THR SER MSE ASN GLN ILE SEQRES 10 C 142 LEU THR VAL GLU GLU SER GLU GLN PHE LEU ALA THR LEU SEQRES 11 C 142 ASP LYS LEU LEU ILE GLY LEU GLN ASN LEU PRO ILE SEQRES 1 D 142 GLY MSE GLN GLU MSE GLU ASP LEU LEU TYR ARG LEU LYS SEQRES 2 D 142 VAL ALA ASP GLU THR ILE SER ASN LEU PHE GLU LYS GLN SEQRES 3 D 142 LEU GLY ILE SER LEU THR ARG TYR SER ILE LEU GLN THR SEQRES 4 D 142 LEU LEU LYS ASP ALA PRO LEU HIS GLN LEU ALA LEU GLN SEQRES 5 D 142 GLU ARG LEU GLN ILE ASP ARG ALA ALA VAL THR ARG HIS SEQRES 6 D 142 LEU LYS LEU LEU GLU GLU SER GLY TYR ILE ILE ARG LYS SEQRES 7 D 142 ARG ASN PRO ASP ASN GLN ARG GLU VAL LEU VAL TRP PRO SEQRES 8 D 142 THR GLU GLN ALA ARG GLU ALA LEU ILE THR ASN PRO SER SEQRES 9 D 142 ALA HIS HIS GLN ALA ILE LYS THR SER MSE ASN GLN ILE SEQRES 10 D 142 LEU THR VAL GLU GLU SER GLU GLN PHE LEU ALA THR LEU SEQRES 11 D 142 ASP LYS LEU LEU ILE GLY LEU GLN ASN LEU PRO ILE MODRES 3BDD MSE A 4 MET SELENOMETHIONINE MODRES 3BDD MSE A 113 MET SELENOMETHIONINE MODRES 3BDD MSE B 4 MET SELENOMETHIONINE MODRES 3BDD MSE B 113 MET SELENOMETHIONINE MODRES 3BDD MSE C 4 MET SELENOMETHIONINE MODRES 3BDD MSE C 113 MET SELENOMETHIONINE MODRES 3BDD MSE D 4 MET SELENOMETHIONINE MODRES 3BDD MSE D 113 MET SELENOMETHIONINE HET MSE A 4 8 HET MSE A 113 8 HET MSE B 4 8 HET MSE B 113 8 HET MSE C 4 8 HET MSE C 113 8 HET MSE D 4 8 HET MSE D 113 8 HET PO4 A 142 5 HET PO4 A 143 5 HET GOL A 144 6 HET GOL B 142 6 HET GOL C 142 6 HET GOL D 142 6 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 11 HOH *224(H2 O) HELIX 1 1 GLN A 2 GLY A 27 1 26 HELIX 2 2 SER A 29 ALA A 43 1 15 HELIX 3 3 HIS A 46 GLN A 55 1 10 HELIX 4 4 ASP A 57 SER A 71 1 15 HELIX 5 5 THR A 91 ILE A 99 1 9 HELIX 6 6 SER A 103 GLN A 115 1 13 HELIX 7 7 THR A 118 ASN A 138 1 21 HELIX 8 8 GLN B 2 GLY B 27 1 26 HELIX 9 9 SER B 29 ASP B 42 1 14 HELIX 10 10 GLN B 47 GLN B 55 1 9 HELIX 11 11 ASP B 57 SER B 71 1 15 HELIX 12 12 THR B 91 ILE B 99 1 9 HELIX 13 13 SER B 103 GLN B 115 1 13 HELIX 14 14 THR B 118 ASN B 138 1 21 HELIX 15 15 GLU C 3 GLY C 27 1 25 HELIX 16 16 SER C 29 ALA C 43 1 15 HELIX 17 17 HIS C 46 GLN C 55 1 10 HELIX 18 18 ASP C 57 SER C 71 1 15 HELIX 19 19 THR C 91 ILE C 99 1 9 HELIX 20 20 SER C 103 ASN C 114 1 12 HELIX 21 21 THR C 118 ASN C 138 1 21 HELIX 22 22 GLN D 2 GLY D 27 1 26 HELIX 23 23 SER D 29 ALA D 43 1 15 HELIX 24 24 GLN D 47 GLN D 55 1 9 HELIX 25 25 ASP D 57 SER D 71 1 15 HELIX 26 26 THR D 91 ILE D 99 1 9 HELIX 27 27 SER D 103 GLN D 115 1 13 HELIX 28 28 THR D 118 ASN D 138 1 21 SHEET 1 A 2 ILE A 74 ARG A 78 0 SHEET 2 A 2 VAL A 86 PRO A 90 -1 O LEU A 87 N LYS A 77 SHEET 1 B 3 LEU B 45 HIS B 46 0 SHEET 2 B 3 LEU B 87 PRO B 90 -1 O VAL B 88 N LEU B 45 SHEET 3 B 3 ILE B 74 LYS B 77 -1 N ILE B 75 O TRP B 89 SHEET 1 C 2 ILE C 74 ARG C 78 0 SHEET 2 C 2 VAL C 86 PRO C 90 -1 O TRP C 89 N ILE C 75 SHEET 1 D 3 LEU D 45 HIS D 46 0 SHEET 2 D 3 LEU D 87 PRO D 90 -1 O VAL D 88 N LEU D 45 SHEET 3 D 3 ILE D 74 ARG D 76 -1 N ILE D 75 O TRP D 89 LINK C GLU A 3 N MSE A 4 1555 1555 1.34 LINK C MSE A 4 N GLU A 5 1555 1555 1.33 LINK C SER A 112 N MSE A 113 1555 1555 1.34 LINK C MSE A 113 N ASN A 114 1555 1555 1.34 LINK C GLU B 3 N MSE B 4 1555 1555 1.34 LINK C MSE B 4 N GLU B 5 1555 1555 1.33 LINK C SER B 112 N MSE B 113 1555 1555 1.34 LINK C MSE B 113 N ASN B 114 1555 1555 1.33 LINK C GLU C 3 N MSE C 4 1555 1555 1.34 LINK C MSE C 4 N GLU C 5 1555 1555 1.34 LINK C SER C 112 N MSE C 113 1555 1555 1.34 LINK C MSE C 113 N ASN C 114 1555 1555 1.34 LINK C GLU D 3 N MSE D 4 1555 1555 1.34 LINK C MSE D 4 N GLU D 5 1555 1555 1.33 LINK C SER D 112 N MSE D 113 1555 1555 1.33 LINK C MSE D 113 N ASN D 114 1555 1555 1.33 CISPEP 1 ALA A 43 PRO A 44 0 0.96 CISPEP 2 ALA B 43 PRO B 44 0 -0.92 CISPEP 3 ALA C 43 PRO C 44 0 -1.90 CISPEP 4 ALA D 43 PRO D 44 0 -1.65 SITE 1 AC1 8 ILE A 28 ARG A 32 LEU A 67 LEU A 68 SITE 2 AC1 8 SER A 71 TYR A 73 HOH A 145 HOH A 211 SITE 1 AC2 5 LYS A 110 MSE A 113 ASN A 114 GLN B 2 SITE 2 AC2 5 GLU B 5 SITE 1 AC3 6 SER C 29 THR C 31 ARG C 32 ARG C 63 SITE 2 AC3 6 HIS C 64 LYS D 12 SITE 1 AC4 7 LYS A 12 SER B 29 LEU B 30 THR B 31 SITE 2 AC4 7 ARG B 32 ARG B 63 HIS B 64 SITE 1 AC5 7 SER A 29 THR A 31 ARG A 32 ARG A 63 SITE 2 AC5 7 HIS A 64 HOH A 155 LYS B 12 SITE 1 AC6 5 LYS C 12 SER D 29 THR D 31 ARG D 32 SITE 2 AC6 5 ARG D 63 CRYST1 50.734 100.430 68.695 90.00 111.42 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019711 0.000000 0.007732 0.00000 SCALE2 0.000000 0.009957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015637 0.00000